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2024-05-03 08:18:40

Gene list

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COG category: Amino acid transport and metabolism
Organism: Staphylococcus epidermidis ATCC 12228, ATCC 12228

Number of genes found: 241

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Staphylococcus epidermidis ATCC 12228, ATCC 12228
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SE1372 D-serine/D-alanine/glycine transporterchromosome CDS1404338 1359 + 0.33922
NA SE1437 proline dehydrohenase-like proteinchromosome CDS1489212 1002 + 0.301397
NA SE1400 conserved hypothetical proteinchromosome CDS1434653 1164 + 0.339347
NA SE1432 multidrug resistance protein-like proteinchromosome CDS1484180 1215 - 0.328395
NA SE1384 alanine dehydrogenasechromosome CDS1420820 1116 - 0.358423
NA SE1282 shikimate dehydrogeneasechromosome CDS1310804 819 - 0.299145
NA SE1392 iron-sulfur cofactor synthesis protein nifZchromosome CDS1428401 1149 - 0.315927
NA SE1214 Xaa-Pro dipeptidasechromosome CDS1250495 1062 - 0.317326
NA SE1305 iron-sulfur cofactor synthesis protein-like proteinchromosome CDS1333843 1143 - 0.319335
NA SE1221 glycine dehydrogenase (decarboxylating) subunit 1chromosome CDS1256279 1347 - 0.327394
NA SE_p101 tetracycline resistance proteinpSE-12228-01 CDS36 1380 + 0.283333
NA SE1193 tripeptidasechromosome CDS1229696 1125 - 0.363556
NA SE1224 shikimate kinasechromosome CDS1258954 513 - 0.2846
NA SE1383 Xaa-Pro dipeptidase-like proteinchromosome CDS1419683 1074 + 0.33054
NA SE1220 glycine dehydrogenase (decarboxylating) subunit 2chromosome CDS1254778 1509 - 0.334659
NA SE1410 phospho-2-dehydro-3-deoxyheptonate aldolasechromosome CDS1448711 1092 - 0.331502
NA SE1356 lysine-specific permeasechromosome CDS1385024 1503 - 0.342648
NA SE1210 putative N-acetylglutamate 5-phosphotransferasechromosome CDS1246777 738 - 0.298103
NA SE1212 N-acetylglutamate gamma-semialdehyde dehydrogenasechromosome CDS1248736 1026 - 0.316764
NA SE_p408 hypothetical proteinpSE-12228-04 CDS6783 1056 + 0.287879
NA SE1186 putative pyrroline-5-carboxylate reductasechromosome CDS1221347 816 + 0.306373
NA SE1424 Xaa-His dipeptidase-like proteinchromosome CDS1463234 1410 - 0.346809
NA SE1211 glutamate N-acetyltransferasechromosome CDS1247524 1194 - 0.351759
NA SE1222 aminomethyltransferasechromosome CDS1257645 1092 - 0.337912
NA SE1423 D-alanine aminotransferasechromosome CDS1462382 849 - 0.326266
NA SE1209 ornithine aminotransferasechromosome CDS1245647 1131 - 0.333333
NA SE1290 conserved hypothetical proteinchromosome CDS1317986 1005 - 0.315423
NA SE1291 conserved hypothetical proteinchromosome CDS1318980 732 - 0.308743
NA SE1401 D-3-phosphoglycerate dehydrogenasechromosome CDS1435806 1596 + 0.344612
SE0009 amino acid permeasechromosome CDS14829 693 + 0.363636
SE0011 putative homoserine-o-acetyltransferasechromosome CDS16136 969 + 0.360165
SE0028 conserved hypothetical proteinchromosome CDS36816 411 - 0.29927
SE0048 conserved hypothetical proteinchromosome CDS54456 411 - 0.296837
SE0060 hypothetical proteinchromosome CDS62853 360 - 0.355556
SE0097 hypothetical proteinchromosome CDS94836 606 + 0.282178
SE0102 putative carbamate kinasechromosome CDS98013 930 - 0.355914
SE0103 ornithine carbamoyltransferasechromosome CDS98962 999 - 0.337337
SE0105 arginine/oirnithine antiporterchromosome CDS100729 1422 - 0.333333
SE0106 arginine deiminasechromosome CDS102236 1236 - 0.332524
SE0112 pyridoxal-deCchromosome CDS107415 1425 - 0.383158
SE0123 sugar transporterchromosome CDS117360 1377 + 0.33406
SE0196 transmembrane efflux pump proteinchromosome CDS187214 1377 + 0.342774
SE0201 diaminopimelate epimerasechromosome CDS190998 840 + 0.360714
SE0205 opp-1A proteinchromosome CDS193985 1599 + 0.340838
SE0206 opp-1B proteinchromosome CDS195596 936 + 0.352564
SE0208 opp-1C proteinchromosome CDS196528 879 + 0.375427
SE0209 opp-1D proteinchromosome CDS197393 816 + 0.346814
SE0210 opp-1F proteinchromosome CDS198201 750 + 0.345333
SE0211 antibiotic resistance proteinchromosome CDS198962 1191 + 0.348447
SE0216 succinyl-diaminopimelate desuccinylasechromosome CDS205962 1218 - 0.351396
SE0217 branched-chain amino acid transport system carrier proteinchromosome CDS207533 1359 + 0.340692
SE0222 glycine betaine/carnitine/choline ABC transporter (ATP-bindin) opuCAchromosome CDS212513 1188 + 0.351852
SE0223 opuCB proteinchromosome CDS213697 636 + 0.33805
SE0225 opuCD proteinchromosome CDS215313 648 + 0.350309
SE0228 putative carbamate kinasechromosome CDS218768 933 - 0.37299
SE0229 ornithine carbamoyltransferasechromosome CDS219723 1002 - 0.364271
SE0231 fosfomycin resistance protein fofBchromosome CDS221537 429 + 0.298368
SE0239 multidrug resistance proteinchromosome CDS227673 1482 - 0.324561
SE0241 multidrug resistance proteinchromosome CDS230262 1419 + 0.350951
SE0242 integral membrane protein LmrPchromosome CDS232133 1311 + 0.299008
SE0247 bicyclomycin resistance protein TcaBchromosome CDS244210 1404 + 0.361111
SE0270 ATP phosphoribosyltransferase regulatory subunitchromosome CDS269950 813 + 0.312423
SE0271 ATP phosphoribosyltransferasechromosome CDS270787 615 + 0.339837
SE0272 putative histidinol dehydrogenasechromosome CDS271394 1245 + 0.355823
SE0273 imidazoleglycerol-phosphate dehydratasechromosome CDS272754 579 + 0.340242
SE0274 amidotransferase hisHchromosome CDS273329 579 + 0.35924
SE0275 putative phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerasechromosome CDS273900 705 + 0.344681
SE0276 cyclase-like protein hisFchromosome CDS274601 759 + 0.355731
SE0277 histidine biosynthesis bifunctional protein HisIEchromosome CDS275356 636 + 0.341195
SE0286 creatine kinasechromosome CDS283718 1008 + 0.327381
SE0291 serine O-acetyltransferasechromosome CDS292405 642 + 0.34891
SE0315 putative ornithine cyclodeaminasechromosome CDS316851 951 + 0.333333
SE0318 Branched-chain amino acid aminotroansferase-like proteinchromosome CDS319770 1077 + 0.357474
SE0320 xylitol dehydrogenasechromosome CDS321826 1032 + 0.300388
SE0354 cationic amino acid transporterchromosome CDS352006 1491 + 0.344735
SE0444 sugar efflux transpoterchromosome CDS439763 1209 + 0.324235
SE0466 quinolone resistance proteinchromosome CDS459355 1164 + 0.321306
SE0488 putative anthranilate synthase component IIchromosome CDS477923 588 + 0.341837
SE0489 putative para-aminobenzoate synthase component Ichromosome CDS478500 1152 + 0.333333
SE0490 putative para-aminobenzoate synthase component Ichromosome CDS479653 609 + 0.305419
SE0492 urea amidolyasechromosome CDS480535 732 + 0.297814
SE0493 conserved hypothetical proteinchromosome CDS481254 1005 + 0.345274
SE0502 choline transport ATP-binding proteinchromosome CDS492024 975 + 0.334359
SE0504 putative histidinol-phosphate aminotransferasechromosome CDS494708 1056 + 0.328598
SE0509 di-tripepride ABC transporterchromosome CDS501078 1506 - 0.341301
SE0511 conserved hypothetical proteinchromosome CDS503381 876 - 0.313927
SE0525 aminotripeptidasechromosome CDS517664 1239 - 0.357546
SE0574 hypothetical proteinchromosome CDS571287 417 - 0.247002
SE0584 conserved hypothetical proteinchromosome CDS579818 189 - 0.275132
SE0592 putative 3-dehydroquinate dehydratasechromosome CDS584208 717 + 0.352859
SE0596 glycine cleavage system protein Hchromosome CDS586723 381 + 0.343832
SE0608 aminotransferase NifS-like proteinchromosome CDS595110 1242 + 0.352657
SE0636 leucyl aminopeptidasechromosome CDS621584 1482 + 0.347503
SE0653 ornithine aminotransferasechromosome CDS636796 1191 + 0.374475
SE0654 NAD-specific glutamate dehydrogenasechromosome CDS638095 1245 + 0.3751
SE0656 argininosuccinate lyasechromosome CDS640730 1392 - 0.34842
SE0657 argininosuccinate synthasechromosome CDS642111 1206 - 0.350746
SE0680 oligopeptide transport system permease proteinchromosome CDS671147 927 + 0.323625
SE0681 oligopeptide transport system permease protein OppCchromosome CDS672073 1071 + 0.339869
SE0682 oligopeptide transport ATP-binding protein subunitchromosome CDS673158 1080 + 0.362037
SE0683 oppF proteinchromosome CDS674230 939 + 0.329073
SE0684 peptide binding protein OppAchromosome CDS675195 1644 + 0.323601
SE0690 thimet oligopeptidase-like proteinchromosome CDS682335 1809 + 0.331675
SE0709 alcohol dehydrogenasechromosome CDS699228 201 - 0.323383
SE0716 multidrug resistance protein-related proteinchromosome CDS705031 1194 - 0.339196
SE0747 HisC proteinchromosome CDS731988 1185 - 0.334177
SE0797 potA proteinchromosome CDS789201 1095 + 0.315982
SE0798 potB proteinchromosome CDS790288 804 + 0.302239
SE0799 potC proteinchromosome CDS791088 822 + 0.323601
SE0800 potD proteinchromosome CDS791906 1074 + 0.321229
SE0836 DNA-dependent DNA polymerase beta chainchromosome CDS829083 1710 + 0.335673
SE0878 carbamoyl-phosphate synthase small chainchromosome CDS872371 1101 + 0.372389
SE0879 carbamoyl-phosphate synthase large chainchromosome CDS873464 3174 + 0.356648
SE0987 glutamine-ammonia ligasechromosome CDS996895 1341 + 0.35123
SE0995 conserved hypothetical proteinchromosome CDS1002416 1026 - 0.34308
SE1008 aspartate kinase-like proteinchromosome CDS1012641 1377 - 0.315178
SE1009 homoserine dehydrogenasechromosome CDS1014206 1281 + 0.319282
SE1010 threonine synthasechromosome CDS1015492 1065 + 0.338967
SE1011 homoserine kinasechromosome CDS1016558 921 + 0.343105
SE1015 gamma-aminobutyrate permeasechromosome CDS1020039 1449 - 0.322981
SE1038 amino acid carrier proteinchromosome CDS1047490 1458 + 0.353909
SE1047 prephenate dehydrogenasechromosome CDS1058167 1089 - 0.30854
SE1048 putative anthranilate synthase component Ichromosome CDS1059914 1407 + 0.294954
SE1049 anthranilate synthase component IIchromosome CDS1061317 567 + 0.303351
SE1050 anthranilate phosphoribosyltransferasechromosome CDS1061886 996 + 0.318273
SE1051 indole-3-glycerol phosphate synthasechromosome CDS1062885 789 + 0.281369
SE1052 phosphoriborylanthranilate isomerasechromosome CDS1063663 624 + 0.283654
SE1053 tryptophan synthase beta chainchromosome CDS1064290 1209 + 0.364764
SE1054 tryptophan synthase alpha chainchromosome CDS1065491 732 + 0.296448
SE1060 opp-2F proteinchromosome CDS1071997 699 - 0.296137
SE1061 oligopeptide transport ATPasechromosome CDS1072698 777 - 0.288288
SE1062 oligopeptide transporter membrane permease domainchromosome CDS1073437 855 - 0.316959
SE1063 oligopeptide transporter membrane permease domainchromosome CDS1074281 1020 - 0.308824
SE1065 oligoendopeptidasechromosome CDS1076047 1812 + 0.333885
SE1073 aspartokinase IIchromosome CDS1086489 1233 + 0.339011
SE1074 aspartate semialdehyde dehydrogenasechromosome CDS1087792 990 + 0.354545
SE1075 dihydrodipicolinate synthasechromosome CDS1088783 885 + 0.344633
SE1076 dihydrodipicolinate reductasechromosome CDS1089667 723 + 0.341632
SE1077 tetrahydrodipicolinate acetyltransferasechromosome CDS1090411 723 + 0.374827
SE1080 diaminopimelate decarboxylasechromosome CDS1093522 1266 + 0.349921
SE1090 branched-chain amino acid carrier proteinchromosome CDS1100895 1344 - 0.325149
SE1094 ABC transporter-like proteinchromosome CDS1105524 810 - 0.335802
SE1153 3-phosphoshikimate 1-carboxyvinyltransferasechromosome CDS1191105 1302 - 0.349462
SE1154 3-dehydroquinate synthasechromosome CDS1192416 1065 - 0.299531
SE1155 chorismate synthasechromosome CDS1193508 1167 - 0.375321
SE1167 L-asparaginasechromosome CDS1203849 969 + 0.339525
SE1460 conserved hypothetical proteinchromosome CDS1510597 786 - 0.323155
SE1540 glutamate ABC transporter ATP-binding proteinchromosome CDS1587161 729 - 0.316872
SE1541 glutamine-binding periplasmic proteinchromosome CDS1587876 1458 - 0.3107
SE1543 serine proteasechromosome CDS1590856 849 - 0.316843
SE1546 D-3-phosphoglycerate dehydrogenasechromosome CDS1600758 951 - 0.280757
SE1564 aminopeptidase ampSchromosome CDS1618028 1242 - 0.342995
SE1581 conserved hypothetical proteinchromosome CDS1632904 549 - 0.289617
SE1587 high affinity proline permeasechromosome CDS1639794 1536 + 0.343099
SE1598 nitric-oxide synthase-like proteinchromosome CDS1653561 1068 + 0.314607
SE1599 chorismate mutasechromosome CDS1654647 804 + 0.314677
SE1654 dihydroxy-acid dehydratasechromosome CDS1707939 1689 + 0.383659
SE1655 acetolactate synthase large subunitchromosome CDS1709635 1752 + 0.356735
SE1656 acetolactate synthase small subunitchromosome CDS1711386 234 + 0.273504
SE1657 alpha-keto-beta-hydroxylacil reductoisomerasechromosome CDS1711736 1005 + 0.355224
SE1658 2-isopropylmalate synthasechromosome CDS1712763 1536 + 0.345703
SE1659 3-isopropylmalate dehydrogenasechromosome CDS1714295 1044 + 0.331418
SE1660 3-isopropylmalate dehydratase large subunitchromosome CDS1715354 1371 + 0.354486
SE1661 3-isopropylmalate dehydratase small subunitchromosome CDS1716812 483 + 0.320911
SE1662 thereonine dehydratasechromosome CDS1717303 1275 + 0.320784
SE1710 serine hydroxymethyl transferasechromosome CDS1762719 1239 - 0.34544
SE1730 conserved hypothetical proteinchromosome CDS1783487 1191 - 0.310663
SE1757 multidrug resistance proteinchromosome CDS1814827 1440 - 0.346528
SE1759 multidrug transporterchromosome CDS1817194 1338 - 0.295217
SE1769 conserved hypothetical proteinchromosome CDS1827178 1062 - 0.308851
SE1771 transporterchromosome CDS1829990 1182 - 0.314721
SE1838 conserved hypothetical proteinchromosome CDS1882077 1194 + 0.325796
SE1860 urea transporterchromosome CDS1898685 903 - 0.327796
SE1861 urease gamma subunitchromosome CDS1899836 321 + 0.383178
SE1862 urease beta subunitchromosome CDS1900170 402 + 0.368159
SE1863 urease alpha subunitchromosome CDS1900574 1716 + 0.37704
SE1892 transport proteinchromosome CDS1928986 1377 - 0.348584
SE1893 conserved hypothetical proteinchromosome CDS1930761 357 + 0.319328
SE1907 formiminoglutamasechromosome CDS1944669 936 - 0.353632
SE1908 conserved hypothetical proteinchromosome CDS1945852 1149 + 0.322019
SE1924 sodium/glutamate symporterchromosome CDS1956913 1209 + 0.335815
SE1932 multidrug resistance proteinchromosome CDS1963353 1977 - 0.334345
SE1935 TcaB proteinchromosome CDS1966718 1212 - 0.334983
SE1981 nickel ABC transporter nickel-binding proteinchromosome CDS2017879 1476 + 0.318428
SE1988 conserved hypothetical proteinchromosome CDS2025057 369 - 0.308943
SE1991 ABC transporter (ATP binding subunit)chromosome CDS2027692 732 - 0.346995
SE1992 ABC transporter (permease protein)chromosome CDS2028420 495 - 0.343434
SE1993 ABC transporter (periplasmic amino acid-binding protein)chromosome CDS2029120 789 - 0.316857
SE1998 conserved hypothetical proteinchromosome CDS2032954 1473 - 0.279022
SE2001 bicyclomycin resistance protein TcaBchromosome CDS2036855 1203 + 0.333333
SE2004 amino acid ABC transporter-like proteinchromosome CDS2040162 1377 + 0.323166
SE2005 conserved hypothetical proteinchromosome CDS2041686 1830 - 0.327869
SE2010 integral membrane efflux proteinchromosome CDS2047795 1401 - 0.34975
SE2015 opuCD proteinchromosome CDS2053613 696 - 0.329023
SE2017 opuCB proteinchromosome CDS2055269 636 - 0.323899
SE2018 glycine betaine/carnitine/choline ABC transporter (ATP-bindin) opuCAchromosome CDS2055907 1257 - 0.334129
SE2019 sorbitol dehydrogenasechromosome CDS2057653 1053 + 0.384615
SE2021 amino acid transporterchromosome CDS2059306 1680 + 0.352381
SE2028 glutamate synthase (ferredoxin)chromosome CDS2067021 1578 + 0.352978
SE2035 succinyl-diaminopimelate desuccinylasechromosome CDS2075804 1257 - 0.385839
SE2044 gluconate permeasechromosome CDS2087177 1359 - 0.362767
SE2056 glucarate transporterchromosome CDS2099713 1275 - 0.363137
SE2058 glycine oxidasechromosome CDS2102250 1119 + 0.360143
SE2080 putative L-serine dehydratasechromosome CDS2125620 900 - 0.398889
SE2081 putative beta-subunit of L-serine dehydrataschromosome CDS2126532 681 - 0.323054
SE2089 putative gamma-glutamyltranspeptidase precursorchromosome CDS2134291 1605 - 0.325857
SE2092 poly-gamma-glutamate synthesis protein PgsCchromosome CDS2137146 453 - 0.311258
SE2098 sorbitol dehydrogenase-like proteinchromosome CDS2142237 1053 + 0.339981
SE2103 pyruvate oxidasechromosome CDS2146854 1740 - 0.344253
SE2112 hypothetical proteinchromosome CDS2155849 465 - 0.296774
SE2122 N-succinyldiaminopimelate aminotransferasechromosome CDS2166563 1176 - 0.357993
SE2130 D-serine/D-alanine/glycine transporterchromosome CDS2175983 1380 - 0.349275
SE2144 acetolactate synthase large subunitchromosome CDS2188615 1665 - 0.353754
SE2147 amino acid transporterchromosome CDS2193551 1452 + 0.373278
SE2148 hypothetical 4-aminobutyrate aminotransferasechromosome CDS2195130 1338 - 0.363229
SE2165 choline dehydrogenasechromosome CDS2213930 1719 - 0.384526
SE2181 phosphoadenosine phosphosulfate reductasechromosome CDS2233518 732 - 0.330601
SE2215 arginine/oirnithine antiporterchromosome CDS2267330 1404 - 0.344017
SE2216 ornithine transcarbamoylasechromosome CDS2268997 1008 - 0.343254
SE2217 arginine deiminasechromosome CDS2270109 1236 - 0.347896
SE2219 zinc metalloproteinase aureolysinchromosome CDS2272658 1524 - 0.354331
SE2220 succinyl-diaminopimelate desuccinylasechromosome CDS2274614 1245 - 0.328514
SE2238 TcaB proteinchromosome CDS2296418 1173 - 0.314578
SE2263 transcription regulator GntR familychromosome CDS2331101 1134 + 0.286596
SE2270 cysteine synthasechromosome CDS2342684 933 - 0.370847
SE2283 ribose-phosphate pyrophosphokinasechromosome CDS2358639 966 - 0.359213
SE2302 lysine decarboxylasechromosome CDS2374829 1338 - 0.309417
SE2311 NADH-glutamate synthase small subunitchromosome CDS2389535 1464 - 0.378415
SE2312 glutamate synthase large subunitchromosome CDS2391016 4497 - 0.362019
SE2323 cystathionine gamma-synthasechromosome CDS2406310 1146 - 0.354276
SE2324 cysteine synthasechromosome CDS2407448 909 - 0.374037
SE2362 conserved hypothetical proteinchromosome CDS2442639 378 + 0.333333
SE2365 conserved hypothetical proteinchromosome CDS2443987 666 - 0.279279
SE2379 cystathionine gamma-synthasechromosome CDS2453038 1104 + 0.34692
SE2380 putative cystathionine beta-lyasechromosome CDS2454138 1176 + 0.386905
SE2381 conserved hypothetical proteinchromosome CDS2455267 1839 + 0.363241
SE2382 5-methyltetrahydropteroyltriglutamate- homocysteine methyltransferasechromosome CDS2457102 2247 + 0.34891
SE2389 conserved hypothetical proteinchromosome CDS2464651 639 + 0.319249
SE2396 transporterchromosome CDS2477265 1386 + 0.351371
SE2411 conserved hypothetical proteinchromosome CDS2492012 396 - 0.358586
SE2412 conserved hypothetical proteinchromosome CDS2492423 360 - 0.347222