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2024-04-29 05:50:09

Gene list

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COG category: Amino acid transport and metabolism
Organism: Lactobacillus sakei subsp. sakei 23K, 23K

Number of genes found: 135

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Lactobacillus sakei subsp. sakei 23K, 23K
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA LSA1424 Putative L-aspartate transport proteinchromosome CDS1394362 1593 + 0.436284
NA LSA0126 Putative amino-acid/polyamine transport proteinchromosome CDS116800 1437 - 0.42032
NA LSA1340 Putative transport proteinchromosome CDS1311540 909 - 0.414741
NA LSA0420 Putative drug:H(+) antiporter (N-terminal fragment), authentic frameshiftchromosome CDS428621 615 - 0.434146
NA LSA0263 Hypothetical integral membrane proteinchromosome CDS258072 468 - 0.393162
NA LSA0070 Putative peptidylarginine deiminase (Amidinotransferase)chromosome CDS66216 1128 + 0.421099
NA LSA0860 Putative amino acid ABC transporter, substrate-binding lipoprotein precursorchromosome CDS847252 804 + 0.41791
NA LSA0360 Putative amino acid/polyamine transport proteinchromosome CDS360954 1752 + 0.430365
NA LSA1801 Putative drug ABC exporter, membrane-spanning subunitchromosome CDS1790636 735 - 0.361905
NA LSA0469 Putative drug:H(+) antiporterchromosome CDS486541 1461 + 0.4141
NA LSA1528 Putative aromatic acid transport protein (C-terminal fragment), authentic frameshiftchromosome CDS1500801 174 - 0.431034
NA LSA1415 Putative amino acid/polyamine transport proteinchromosome CDS1384031 1434 + 0.419107
NA LSA1786 Putative melibiose:Na(+) transport proteinchromosome CDS1769205 1245 + 0.458635
NA LSA0094 Putative transport protein, Major Facilitator Superfamilychromosome CDS90563 1224 - 0.474673
NA LSA1695 Putative glycine/betaine/carnitine ABC transporter, membrane-spanning subunitchromosome CDS1676360 843 - 0.434164
NA LSA1037 Putative amino acid/polyamine transport proteinchromosome CDS1027429 1533 - 0.394651
NA LSA1662 Hypothetical proteinchromosome CDS1645405 288 - 0.371528
NA LSA1010 Putative drug:H(+) antiporter (N-terminal fragment), authentic frameshiftchromosome CDS1001242 387 - 0.426357
NA LSA1621 Putative drug:H(+) antiporterchromosome CDS1607647 1254 + 0.464115
NA LSA1872 Putative drug:H(+) antiporterchromosome CDS1858132 1473 - 0.468432
NA LSA1056 Putative amino acid ABC transporter, ATP-binding subunitchromosome CDS1050999 732 - 0.424863
NA LSA1870 Putative glycine betaine/carnitine/choline ABC transporter, ATP-binding subunitchromosome CDS1855662 939 - 0.464324
NA LSA0998 Putative extracellular lysophospholipase precursorchromosome CDS989600 903 - 0.41196
NA LSA0592 Hypothetical prophage lsa1 peptidechromosome CDS599053 105 + 0.352381
NA LSA0071 Putative carbamate kinasechromosome CDS67359 936 + 0.435897
NA LSA0033 Putative transport protein, Major Facilitator Superfamilychromosome CDS32333 1140 - 0.485088
NA LSA1497 Putative glutamine/glutamate ABC transporter, membrane-spanning/substrate-binding subunit precursorchromosome CDS1469419 1437 - 0.421712
NA LSA1009 Putative drug:H(+) antiporter (C-terminal fragment), authentic frameshiftchromosome CDS1000541 693 - 0.422799
NA LSA0619 Putative glycine/betaine/carnitine/choline ABC transporter, membrane-spanning subunitchromosome CDS620543 660 + 0.45
NA LSA0419 Putative drug:H(+) antiporter (C-terminal fragment), authentic frameshiftchromosome CDS427759 894 - 0.430649
NA LSA0582 Hypothetical proteinchromosome CDS591129 426 + 0.450704
NA LSA1111 Putative cysteine desulfurase (Class-V aminotransferase, putative SufS protein homologue)chromosome CDS1102039 1239 - 0.479419
NA LSA1579 Putative teichoic acid/polysaccharide export proteinchromosome CDS1553850 1542 - 0.319066
NA LSA0668 Hypothetical proteinchromosome CDS670866 243 - 0.403292
NA LSA1866 Hypothetical membrane proteinchromosome CDS1852043 468 - 0.442308
NA LSA1529 Putative aromatic acid transport protein (N-terminal fragment), authentic frameshiftchromosome CDS1500983 1014 - 0.477318
NA LSA0157 Putative hydroxyl/aromatic amino acid symporterchromosome CDS151939 1326 - 0.37632
NA LSA1035 Hypothetical small integral membrane proteinchromosome CDS1026177 177 + 0.39548
NA LSA1196 Putative lysophospholipase Lchromosome CDS1177463 609 - 0.415435
NA LSA0616 Putative glycine/betaine/carnitine/choline ABC transporter, ATP-binding subunitchromosome CDS617807 1152 + 0.432292
NA LSA0125 Putative amino acid/polyamine transport proteinchromosome CDS115396 1353 + 0.417591
NA LSA0068 Putative amino acid/polyamine antiporter (N-terminal fragment), authentic frameshiftchromosome CDS64869 981 + 0.417941
NA LSA1117 Putative aminomethyltransferase, family of glycine cleavage H proteinchromosome CDS1108427 309 - 0.378641
NA LSA1057 Putative amino acid ABC transporter, substrate binding/permease subunitchromosome CDS1051723 1464 - 0.402322
NA LSA0205 Putative drug:H(+) antiporterchromosome CDS197102 1560 + 0.432692
NA LSA1478 Hypothetical proteinchromosome CDS1454735 180 - 0.388889
NA LSA1435 Putative amino acid:H(+) symporterchromosome CDS1406456 1353 - 0.422025
NA LSA0140 Hypothetical integral membrane proteinchromosome CDS134511 1368 + 0.429094
NA LSA0255 Putative phosphoribosyl isomerasechromosome CDS250363 696 + 0.393678
NA LSA1694 Putative glycine/betaine/carnitine ABC transporter, substrate binding lipoprotein precursorchromosome CDS1675443 906 - 0.412804
NA LSA1418 Putative ABC transporter, ATP-binding subunit (N-terminal fragment), authentic rameshiftchromosome CDS1387392 315 - 0.361905
NA LSA0189 Putative amino acid/polyamine transport proteinchromosome CDS181932 1392 + 0.426724
NA LSA0227 Putative drug:H(+) antiporterchromosome CDS223777 1344 + 0.442708
NA LSA0551 Putative oligopeptide ABC transporter, substrate-binding lipoprotein precursorchromosome CDS569547 1641 + 0.419257
NA LSA0740 Hypothetical integral membrane proteinchromosome CDS736043 357 - 0.411765
NA LSA0846 Putative cysteine desulfurase (aminotransferase class V)chromosome CDS832370 1149 + 0.429939
NA LSA1689 Putative peptidase M20 familychromosome CDS1670370 1323 - 0.471655
NA LSA1496 Putative glutamine/glutamate ABC transporter, ATP-binding subunitchromosome CDS1468685 735 - 0.444898
NA LSA1219 Putative cationic amino acid transport proteinchromosome CDS1200077 1392 + 0.438218
NA LSA0089 Putative drug transport proteinchromosome CDS86081 927 - 0.423948
NA LSA0791 Putative cysteine desulfurase (aminotransferase, class V)chromosome CDS783792 1167 + 0.422451
NA LSA0268 Putative drug:H(+) antiporterchromosome CDS261705 1176 + 0.453231
NA LSA1696 Putative glycine/betaine/carnitine ABC transporter, ATP-binding subunitchromosome CDS1677207 1200 - 0.406667
NA LSA1697 Putative amino-acid/polyamine transport proteinchromosome CDS1678738 1485 - 0.424916
NA LSA0072 Putative peptidylarginine deiminase (Amidinotransferase)chromosome CDS68379 1104 + 0.428442
NA LSA1642 Putative Solute:Na(+) symporterchromosome CDS1626528 1503 - 0.369927
NA LSA0067 Putative ornithine carbamoyltransferase (OTCase)chromosome CDS63798 1032 + 0.387597
NA LSA0858 Putative amino acid ABC transporter, membrane-spanning subunitchromosome CDS845960 642 + 0.403427
NA LSA0711 Putative gluconate permeasechromosome CDS714711 1284 + 0.432243
NA LSA0617 Putative glycine/betaine/carnitine/choline ABC transporter, membrane-spanning subunitchromosome CDS618973 627 + 0.46252
NA LSA0308 Putative drug:H(+) antiporterchromosome CDS311555 1182 - 0.415398
NA LSA1351 Putative transcritional regulator with aminotransferase domain, GntR familychromosome CDS1320085 1428 - 0.471989
NA LSA0069 Putative amino acid/polyamine antiporter (C-terminal fragment), authentic frameshiftchromosome CDS65735 495 + 0.393939
NA LSA0770 Putative drug:H(+) antiporterchromosome CDS766358 1428 + 0.413866
adh LSA0925 Putative zinc-containg alcohol dehydrogenase (oxidoreductase)chromosome CDS915956 1041 + 0.456292
als LSA0982 Acetolactate synthase (Alpha-acetolactate synthase)chromosome CDS974638 1683 - 0.440879
araT LSA1860 D-Arabinose:H(+) symporterchromosome CDS1847450 1383 - 0.438901
arcA LSA0370 Arginine deiminase (Arginine dihydrolase)chromosome CDS373337 1236 + 0.411003
arcB LSA0371 Ornithine transcarbamoylase (Catabolic OTCase)chromosome CDS374598 1017 + 0.373648
arcC LSA0372 Carbamate kinasechromosome CDS375713 945 + 0.426455
arcD LSA0374 Arginine/ornithine antiporterchromosome CDS377818 1428 + 0.396359
arcT LSA0373 putative aminotransferasechromosome CDS376669 1116 + 0.421147
aroB LSA0894 3-dehydroquinate synthasechromosome CDS880628 1068 + 0.45412
aroD LSA0889 3-dehydroquinate dehydratase (Type I DHQase)chromosome CDS876140 723 - 0.46473
aroE LSA0892 Shikimate 5-dehydrogenasechromosome CDS878761 873 + 0.459336
aroH LSA0893 Phospho-2-dehydro-3-deoxyheptonate aldolase (chorismate mutase)chromosome CDS879630 996 + 0.462851
aroK LSA0895 Shikimate kinasechromosome CDS881773 531 + 0.433145
asnA1 LSA0347 L-asparaginasechromosome CDS347803 975 - 0.461538
asnA2 LSA1693 L-asparaginasechromosome CDS1674319 954 - 0.462264
asnB LSA0636 Asparagine synthetase, glutamine-hydrolysingchromosome CDS637303 1905 + 0.386352
aspD LSA0306 L-aspartate-beta-decarboxylasechromosome CDS304048 1608 + 0.406095
dapE LSA0220_c Succinyl-diaminopimelate desuccinylasechromosome CDS217034 1299 - 0.439569
dtpT LSA1592 Di-/tripeptide:H(+) symporterchromosome CDS1569369 1461 - 0.406571
glnA LSA1321 Glutamate--ammonia ligase (Glutamine synthetase)chromosome CDS1291996 1344 - 0.400298
gloAC LSA0609 Lactoylglutathione lyase (C-terminal fragment), authentic frameshiftchromosome CDS611737 120 + 0.4
gloAN LSA0608 Lactoylglutathione lyase (N-terminal fragment), authentic frameshiftchromosome CDS611478 267 + 0.40824
glyA LSA1134 Glycine/Serine hydroxymethyltransferasechromosome CDS1121227 1248 - 0.425481
gntP LSA0299 Gluconate:H(+) symporterchromosome CDS297622 1353 + 0.436807
ls859 LSA0859 Putative amino acid ABC transporter, ATP-binding subunitchromosome CDS846614 642 + 0.442368
lysP LSA1817 Lysine:H(+) symporterchromosome CDS1808338 1431 - 0.422781
nanA LSA1640 N-acetylneuraminate lyasechromosome CDS1624703 918 - 0.374728
oppA LSA0702 Oligopeptide ABC transporter, substrate-binding lipoprotein precursorchromosome CDS701594 1647 + 0.390407
oppB LSA0703 Oligopeptide ABC transporter, membrane-spanning subunitchromosome CDS703310 936 + 0.416667
oppC LSA0704 Oligopeptide ABC transporter, membrane-spanning subunitchromosome CDS704246 1014 + 0.442801
oppD LSA0705 Oligopeptide ABC transporter, ATP-binding subunitchromosome CDS705546 1026 + 0.45809
oppF LSA0706 Oligopeptide ABC transporter, ATP-binding subunitchromosome CDS706600 963 + 0.438214
pepC1N LSA1686 Cysteine aminopeptidase C1 (Bleomycin hydrolase) (N-terminal fragment), authentic frameshiftchromosome CDS1667449 1209 + 0.449959
pepC2 LSA1688 Cysteine aminopeptidase C2 (Bleomycin hydrolase)chromosome CDS1668975 1347 + 0.429102
pepD1 LSA0179 Dipeptidase D-type (U34 family)chromosome CDS171633 1407 - 0.428571
pepD2 LSA0196 Dipeptidase D-type (U34 family)chromosome CDS189082 1419 + 0.397463
pepD3 LSA0320 Dipeptidase D-type (U34 family)chromosome CDS324882 1422 + 0.393812
pepD4 LSA0584 Dipeptidase D-type (U34 family)chromosome CDS593460 1407 - 0.432836
pepD5 LSA0897 Dipeptidase D-type (U34 family)chromosome CDS883107 1437 - 0.460682
pepF1 LSA0285 Oligoendopeptidase F1chromosome CDS280719 1806 - 0.44629
pepF2 LSA1882 Oligoendopeptidase F2chromosome CDS1880528 1794 - 0.445931
pepN LSA0226 Aminopeptidase N (Lysyl-aminopeptidase-Alanyl aminopeptidase)chromosome CDS221085 2532 + 0.445103
pepQ LSA0414 Xaa-Pro dipeptidase (Proline dipeptidase)chromosome CDS420820 1098 - 0.422587
pepS LSA1522 Aminopeptidase Schromosome CDS1496180 1233 + 0.440389
pepT LSA0888 Tripeptide aminopeptidase Tchromosome CDS874844 1242 + 0.381643
pepV LSA0424 Xaa-His dipeptidase V (Carnosinase)chromosome CDS431474 1404 - 0.423077
pepX LSA0643 X-Prolyl dipeptidyl-aminopeptidasechromosome CDS643705 2412 + 0.430348
potA LSA1363 Spermidine/putrescine ABC transporter, ATP-binding subunitchromosome CDS1332784 1092 - 0.408425
potB LSA1362 Spermidine/putrescine ABC transporter, membrane-spanning subunitchromosome CDS1331960 816 - 0.393382
potC LSA1361 Spermidine/putrescine ABC transporter, membrane-spanning proteinchromosome CDS1331139 825 - 0.401212
potD LSA1360 Spermidine/putrescine ABC transporter, substrate binding lipoprotein precursorchromosome CDS1330075 1068 - 0.417603
pox1 LSA1188 Pyruvate oxidasechromosome CDS1170993 1836 + 0.413943
pox2 LSA1830 Pyruvate oxidasechromosome CDS1819510 1734 - 0.443483
proC LSA1590 Pyrroline-5-carboxylate reductasechromosome CDS1567048 807 - 0.449814
prs LSA1646 Ribose-phosphate diphosphokinase (Phosphoribosyl pyrophosphate synthetase)chromosome CDS1631162 972 - 0.393004
pyrAA LSA0954 Carbamoyl-phosphate synthase, glutaminase subunitchromosome CDS941011 1077 + 0.449396
pyrAB LSA0955 Carbamoyl-phosphate synthase, catalytic subunitchromosome CDS942105 3183 + 0.447691
sdhA LSA0317 L-serine dehydratase, alpha subunit (L-serine deaminase)chromosome CDS321630 894 + 0.43736
sdhB LSA0316 L-serine dehydratase, beta subunit (L-serine deaminase)chromosome CDS320963 651 + 0.427035
serA LSA0922 D-3-phosphoglycerate dehydrogenasechromosome CDS913496 954 + 0.42348
tdcB LSA0572 Threonine deaminase ( Threonine ammonia-lyase,Threonine dehydratase, IlvA homolog)chromosome CDS582795 1041 + 0.417867