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2024-04-27 09:29:56

Gene list

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COG category: Amino acid transport and metabolism
Organism: Synechococcus sp. JA-2-3Ba(2-13), JA-2-3Ba(2-13)

Number of genes found: 211

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Synechococcus sp. JA-2-3Ba(2-13), JA-2-3Ba(2-13)
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA CYB_0772 hydrophobic amino acid ABC transporter (HAAT) family, periplasmic amino acid-binding proteinchromosome CDS794683 1254 - 0.598884
NA CYB_2083 hydrophobic amino acid ABC transporter (HAAT) family, permease proteinchromosome CDS2179781 960 - 0.59375
NA CYB_0246 4-hydroxyphenylpyruvate dioxygenase, putativechromosome CDS259659 1080 + 0.587037
NA CYB_0653 prephenate dehydratasechromosome CDS668015 987 - 0.598784
NA CYB_1818 peptidase, M17 (leucyl aminopeptidase) familychromosome CDS1904034 1533 - 0.598173
NA CYB_0532 hypothetical proteinchromosome CDS546440 462 - 0.593074
NA CYB_0482 Orn/Lys/Arg decarboxylasechromosome CDS493690 1542 - 0.599222
NA CYB_0545 polyamine/opine/phosphonate uptake ABC transporter (POPT) family, permease proteinchromosome CDS557377 804 - 0.593284
NA CYB_0791 conserved domain proteinchromosome CDS817510 366 - 0.606557
NA CYB_0850 OppBC ABC transporter family, permease proteinchromosome CDS883063 1029 - 0.603499
NA CYB_0183 conserved hypothetical proteinchromosome CDS197581 438 - 0.563927
NA CYB_0591 hypothetical proteinchromosome CDS597402 648 - 0.498457
NA CYB_1407 phospho-2-dehydro-3-deoxyheptonate aldolasechromosome CDS1475732 1071 + 0.615313
NA CYB_1662 zinc carboxypeptidase family proteinchromosome CDS1742629 561 - 0.627451
NA CYB_0132 ABC transporter, permease proteinchromosome CDS144607 930 - 0.641935
NA CYB_0130 ABC transporter, permease proteinchromosome CDS143786 825 - 0.638788
NA CYB_0790 putative membrane proteinchromosome CDS816611 900 - 0.612222
NA CYB_1883 peptide/opine/nickel ABC transporter (PepT) family, permease proteinchromosome CDS1967405 894 - 0.587248
NA CYB_0024 ABC transporter, ATP-binding proteinchromosome CDS30461 1107 + 0.635953
NA CYB_2694 conserved hypothetical proteinchromosome CDS2781228 696 - 0.58908
NA CYB_0581 quaternary amine uptake ABC transporter (QAT) family, permease proteinchromosome CDS588095 618 + 0.634304
NA CYB_0774 hydrophobic amino acid ABC transporter (HAAT) family, ATP-binding proteinchromosome CDS796256 819 + 0.589744
NA CYB_2016 peptidase, S9C (acylaminoacyl-peptidase) familychromosome CDS2121155 1929 + 0.608606
NA CYB_2125 cystine ABC transporter, permease proteinchromosome CDS2217975 747 + 0.574297
NA CYB_0337 integral membrane proteinchromosome CDS355765 930 + 0.612903
NA CYB_1451 putative membrane proteinchromosome CDS1522979 2214 + 0.639566
NA CYB_2850 amino acid transporter, periplasmic amino acid-binding proteinchromosome CDS2945585 930 + 0.623656
NA CYB_2827 hypothetical proteinchromosome CDS2928199 240 + 0.520833
NA CYB_2900 putative membrane-bound proteasechromosome CDS2999220 942 - 0.623142
NA CYB_1262 aminotransferase, classes I and IIchromosome CDS1319040 1197 - 0.635756
NA CYB_0190 ferric iron ABC transporter (FeT) family, ATP-binding proteinchromosome CDS203165 1224 + 0.594771
NA CYB_1307 2-isopropylmalate synthase/homocitrate synthase family proteinchromosome CDS1370139 1719 - 0.617219
NA CYB_0505 polyamine transporter, periplasmic polyamine-binding proteinchromosome CDS516914 1098 + 0.557377
NA CYB_2315 putative cysteine synthase Bchromosome CDS2426036 903 - 0.604651
NA CYB_1186 oligopeptide ABC transporter, permease proteinchromosome CDS1223892 1233 + 0.59854
NA CYB_2050 glyoxalase family proteinchromosome CDS2149725 471 + 0.573248
NA CYB_0268 NitT/TauT family ABC transporter, ATP-binding proteinchromosome CDS283433 1374 + 0.597525
NA CYB_1203 hypothetical proteinchromosome CDS1247141 483 - 0.567288
NA CYB_0340 aminotransferase, classes I and IIchromosome CDS358767 1290 - 0.616279
NA CYB_0279 glyoxalase family proteinchromosome CDS294356 387 + 0.583979
NA CYB_1197 putative membrane-bound proteasechromosome CDS1239978 2367 + 0.612167
NA CYB_0508 conserved hypothetical proteinchromosome CDS523547 378 + 0.497355
NA CYB_0217 aspartate kinasechromosome CDS227576 1851 - 0.628309
NA CYB_0234 polyamine/opine/phosphonate uptake ABC transporter (POPT) family, permease proteinchromosome CDS243545 933 + 0.524116
NA CYB_2275 conserved hypothetical proteinchromosome CDS2380544 663 - 0.473605
NA CYB_0681 transporter, solute:sodium symporter (SSS) familychromosome CDS695292 1455 + 0.602749
NA CYB_0250 amidinotransferase family proteinchromosome CDS265343 2133 + 0.60947
NA CYB_1007 hypothetical proteinchromosome CDS1047061 504 - 0.551587
NA CYB_2716 peptidase M3B family, nonpeptidase-like proteinchromosome CDS2807448 1974 - 0.619554
NA CYB_2014 urea ABC transporter, permease proteinchromosome CDS2118235 1158 - 0.587219
NA CYB_1412 GDSL-like lipase/acylhydrolase domain proteinchromosome CDS1479696 2301 + 0.529335
NA CYB_2682 putative membrane proteinchromosome CDS2767423 588 + 0.602041
NA CYB_0580 quaternary amine uptake ABC transporter (QAT) family, ATP-binding proteinchromosome CDS587130 969 + 0.627451
NA CYB_1808 soluble hydrogenase, tritium exchange subunit, putativechromosome CDS1892268 1164 - 0.599656
NA CYB_0553 putative gamma-glutamyl phosphate reductasechromosome CDS563050 1302 - 0.597542
NA CYB_2213 membrane protein, putativechromosome CDS2321459 969 + 0.621259
NA CYB_1881 peptide/opine/nickel uptake ABC transporter (PepT) family, ATP-binding proteinchromosome CDS1965810 675 - 0.585185
NA CYB_1865 peptidase, S10 (carboxypeptidase Y) familychromosome CDS1948151 1524 - 0.581365
NA CYB_0961 hydantoinase/oxoprolinase family proteinchromosome CDS997526 1596 + 0.64411
NA CYB_0927 oxidoreductase, FAD-dependentchromosome CDS965343 1341 - 0.636838
NA CYB_2305 transporter, major facilitator familychromosome CDS2415751 1287 - 0.581974
NA CYB_0775 hydrophobic amino acid ABC transporter (HAAT) family, ATP-binding proteinchromosome CDS797071 708 + 0.581921
NA CYB_1648 aminotransferase, class Vchromosome CDS1719941 1197 - 0.649123
NA CYB_1026 peptidase, M24B familychromosome CDS1068088 1803 + 0.615641
NA CYB_1710 oxidoreductase, FAD-bindingchromosome CDS1792911 1098 + 0.642076
NA CYB_2064 transporter, major facilitator familychromosome CDS2160617 1545 + 0.621359
NA CYB_1882 oligopeptide/dipeptide ABC transporter, ATP-binding proteinchromosome CDS1966471 930 - 0.615054
NA CYB_0561 transporter, drug:H+ antiporter-1 (12 spanner) (DHA1) familychromosome CDS570229 1302 + 0.602919
NA CYB_2490 conserved hypothetical proteinchromosome CDS2587260 507 - 0.593688
NA CYB_1891 membrane protein, putativechromosome CDS1977427 513 + 0.598441
NA CYB_0931 polar amino amino acid ABC transporter (PAAT) family, permease proteinchromosome CDS969539 1173 - 0.618926
NA CYB_1885 peptide/opine/nickel ABC transporter (PepT) family, periplasmic substrate-binding proteinchromosome CDS1969281 1626 - 0.560271
NA CYB_1678 isopropylmalate/isohomocitrate dehydrogenase family proteinchromosome CDS1754173 1071 - 0.598506
NA CYB_1997 cysteine desulfurase, SufS familychromosome CDS2103447 1278 - 0.5759
NA CYB_1038 L-asparaginase, thermolabilechromosome CDS1079568 954 - 0.610063
NA CYB_0952 transporter, major facilitator familychromosome CDS989823 1281 - 0.587041
NA CYB_0502 conserved hypothetical proteinchromosome CDS513959 705 - 0.62695
NA CYB_2011 urea ABC transporter, ATP-binding proteinchromosome CDS2115282 765 - 0.511111
NA CYB_2234 hydantoinase/oxoprolinase family proteinchromosome CDS2340849 2016 + 0.639385
NA CYB_1762 polyamine ABC transporter, periplasmic polyamine-binding proteinchromosome CDS1846142 1152 - 0.619792
NA CYB_0932 polar amino amino acid ABC transporter (PAAT) family, periplasmic amino acid-binding proteinchromosome CDS970810 1038 - 0.600193
NA CYB_0923 methylenetetrahydrofolate reductase family proteinchromosome CDS961555 918 - 0.633987
NA CYB_1554 oxidoreductase, FAD-dependent domain proteinchromosome CDS1627420 1185 + 0.629536
NA CYB_2215 conserved hypothetical proteinchromosome CDS2323574 285 + 0.589474
NA CYB_0933 polar amino amino acid ABC transporter (PAAT) family, ATP-binding proteinchromosome CDS972111 789 + 0.558935
NA CYB_2084 hydrophobic amino acid ABC transporter (HAAT) family, permease proteinchromosome CDS2180740 870 - 0.597701
NA CYB_2124 cystine ABC transporter, periplasmic cystine-binding proteinchromosome CDS2217040 864 + 0.576389
NA CYB_0029 quaternary amine ABC transporter (QAT) family, permease proteinchromosome CDS37665 642 - 0.596573
NA CYB_0428 transporter, major facilitator familychromosome CDS436073 1230 + 0.587805
NA CYB_2015 urea ABC transporter, periplasmic urea-binding proteinchromosome CDS2119497 1275 - 0.570196
NA CYB_2357 glyoxalase family proteinchromosome CDS2463159 459 - 0.583878
NA CYB_2252 arginase family proteinchromosome CDS2355470 864 - 0.614583
NA CYB_0275 hypothetical proteinchromosome CDS290738 528 + 0.5625
NA CYB_0651 putative membrane-bound proteasechromosome CDS665042 1830 - 0.595628
NA CYB_0526 aspartate ammonia-lyase, putativechromosome CDS540591 1386 + 0.623377
NA CYB_1152 transporter, folate-biopterin transporter (FBT) familychromosome CDS1192105 1428 + 0.608543
NA CYB_2913 putative homoserine O-acetyltransferasechromosome CDS3010587 1011 - 0.563798
NA CYB_2532 prolyl oligopeptidasechromosome CDS2634102 2064 + 0.604651
NA CYB_0071 aminotransferase, classes I and IIchromosome CDS82505 1185 + 0.608439
NA CYB_0930 polar amino amino acid ABC transporter (PAAT) family, permease proteinchromosome CDS968327 1209 - 0.612076
NA CYB_2079 polyamine ABC transporter, ATP-binding proteinchromosome CDS2175462 1119 - 0.586238
NA CYB_0763 transcriptional regulator, AbrB familychromosome CDS785039 453 - 0.534216
NA CYB_2013 urea ABC transporter, permease proteinchromosome CDS2117023 1209 - 0.542597
NA CYB_1677 D-isomer specific 2-hydroxyacid dehydrogenasechromosome CDS1753189 927 + 0.622438
NA CYB_0333 glycosyl transferase family proteinchromosome CDS350302 1041 + 0.615754
NA CYB_2144 putative acetolactate synthase, catabolicchromosome CDS2243363 1638 - 0.601343
NA CYB_0513 conserved hypothetical proteinchromosome CDS526113 1266 + 0.584518
NA CYB_0057 S-adenosylmethionine decarboxylase proenzymechromosome CDS69559 459 + 0.592593
NA CYB_2005 asparaginase 2 family proteinchromosome CDS2110969 879 + 0.626849
NA CYB_0936 hydrophobic amino acid uptake ABC transporter (HAAT) family, periplasmic amino acid-binding proteinchromosome CDS974140 1416 + 0.63065
NA CYB_0777 hypothetical proteinchromosome CDS799726 1017 - 0.616519
NA CYB_1052 conserved hypothetical proteinchromosome CDS1090461 363 - 0.548209
NA CYB_0540 putative low specificity L-threonine aldolasechromosome CDS555082 1041 + 0.600384
NA CYB_0784 peptide/opine/nickel ABC transporter (PepT) family, periplasmic substrate-binding proteinchromosome CDS807712 1767 + 0.593096
NA CYB_1884 peptide/opine/nickel ABC transporter (PepT) family, permease proteinchromosome CDS1968295 1002 - 0.565868
NA CYB_0152 transporter, major facilitator familychromosome CDS167037 1194 - 0.628978
NA CYB_0335 hypothetical proteinchromosome CDS353347 909 + 0.618262
NA CYB_0689 membrane protein, putativechromosome CDS705842 1521 + 0.626561
NA CYB_2009 peptidase, M55 (DppA aminopeptidase) familychromosome CDS2113202 804 + 0.600746
NA CYB_1464 polyamine/opine/phosphonate uptake ABC transporter family,periplasmic substrate-binding proteinchromosome CDS1539171 1233 + 0.583131
NA CYB_2760 transporter, putative bacteriochlorophyll delivery (BCD) familychromosome CDS2858008 1461 - 0.594798
ald CYB_1358 alanine dehydrogenasechromosome CDS1429582 1089 + 0.631772
ampG CYB_1430 peptide-acetyl-coenzyme A transporter (PAT) family protein AmpGchromosome CDS1499889 1347 - 0.582034
argB CYB_1687 acetylglutamate kinasechromosome CDS1761444 939 + 0.588924
argC CYB_0289 N-acetyl-gamma-glutamyl-phosphate reductasechromosome CDS301582 1107 + 0.613369
argD CYB_1419 acetylornithine transaminasechromosome CDS1486359 1266 + 0.624803
argF CYB_0821 ornithine carbamoyltransferasechromosome CDS850394 945 - 0.628571
argG CYB_1752 argininosuccinate synthasechromosome CDS1835742 1203 - 0.625935
argH CYB_2070 argininosuccinate lyasechromosome CDS2166882 1434 + 0.610879
argJ CYB_2548 arginine biosynthesis bifunctional protein ArgJchromosome CDS2651825 1218 - 0.610016
aroA CYB_1326 3-phosphoshikimate 1-carboxyvinyltransferasechromosome CDS1387469 1305 - 0.640613
aroB CYB_1570 3-dehydroquinate synthasechromosome CDS1641822 1137 - 0.618294
aroC CYB_1511 chorismate synthasechromosome CDS1583525 1137 + 0.664908
aroE CYB_1006 shikimate 5-dehydrogenasechromosome CDS1046132 867 - 0.615917
aroH CYB_1839 chorismate mutasechromosome CDS1926541 375 + 0.557333
aroK CYB_1737 shikimate kinasechromosome CDS1818978 564 - 0.611702
aroQ CYB_2912 3-dehydroquinate dehydratasechromosome CDS3010146 435 + 0.590805
asd CYB_1568 aspartate-semialdehyde dehydrogenasechromosome CDS1640780 1008 - 0.617063
aspB CYB_1421 aminotransferase, classes I and IIchromosome CDS1489481 1251 - 0.606715
aspC CYB_1878 aspartate aminotransferasechromosome CDS1962899 1167 - 0.608398
carA CYB_1236 carbamoyl-phosphate synthase, small subunitchromosome CDS1279279 1188 - 0.622054
carB CYB_0215 carbamoyl-phosphate synthase, large subunitchromosome CDS222909 3249 + 0.605417
cefD CYB_1874 isopenicillin N-epimerasechromosome CDS1957778 1137 - 0.605981
cobD-1 CYB_0897 L-threonine-O-3-phosphate decarboxylasechromosome CDS929856 1134 + 0.630511
cysE CYB_2852 serine O-acetyltransferasechromosome CDS2948746 780 - 0.588462
cysH CYB_0438 phosophoadenylyl-sulfate reductasechromosome CDS448355 747 + 0.590361
cysK CYB_1982 cysteine synthase Achromosome CDS2081795 957 - 0.603971
dapA CYB_0048 dihydrodipicolinate synthasechromosome CDS61302 921 - 0.567861
dapB CYB_0924 dihydrodipicolinate reductasechromosome CDS960698 861 + 0.615563
dapF CYB_1371 diaminopimelate epimerasechromosome CDS1441288 858 - 0.617716
gcvH CYB_0348 glycine cleavage system H proteinchromosome CDS366610 390 - 0.551282
gcvP CYB_0137 glycine dehydrogenasechromosome CDS149926 2967 + 0.626896
gcvT CYB_1141 glycine cleavage system T proteinchromosome CDS1177669 1125 + 0.614222
ggt CYB_2091 gamma-glutamyltransferasechromosome CDS2187221 1644 - 0.642336
glnA-1 CYB_1005 glutamine synthetasechromosome CDS1044770 1299 + 0.574288
glnA-2 CYB_2804 glutamine synthetase, type Ichromosome CDS2903069 1425 - 0.574035
glnB CYB_2704 nitrogen regulatory protein P-IIchromosome CDS2793521 339 + 0.528024
glnH CYB_2169 polar amino acid ABC transporter (PAAT) family, periplasmic amino acid-binding proteinchromosome CDS2272659 858 - 0.610723
gltS CYB_1253 ferredoxin-dependent glutamate synthasechromosome CDS1303586 4608 + 0.61849
glyA CYB_2810 serine hydroxymethyltransferasechromosome CDS2912030 1284 + 0.612928
hisA CYB_1964 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerasechromosome CDS2060409 786 + 0.631043
hisB CYB_0671 imidazoleglycerol-phosphate dehydratasechromosome CDS684863 621 + 0.597423
hisC CYB_0260 histidinol-phosphate aminotransferasechromosome CDS275061 1062 - 0.626177
hisD CYB_0073 histidinol dehydrogenasechromosome CDS84796 1314 + 0.626332
hisF CYB_0445 imidazoleglycerol phosphate synthase, cyclase subunitchromosome CDS453281 762 - 0.645669
hisG CYB_1550 ATP phosphoribosyltransferasechromosome CDS1625446 708 + 0.611582
hisH CYB_0889 imidazole glycerol phosphate synthase, glutamine amidotransferase subunitchromosome CDS921848 657 - 0.601218
hisIE CYB_0157 histidine biosynthesis bifunctional protein HisIEchromosome CDS172007 624 - 0.610577
hisZ CYB_1100 ATP phosphoribosyltransferase regulatory subunitchromosome CDS1133482 1305 + 0.652107
hom CYB_1425 homoserine dehydrogenasechromosome CDS1494723 1311 - 0.635393
ilvB CYB_0648 acetolactate synthase, large subunit, biosynthetic typechromosome CDS659644 1797 - 0.633834
ilvC CYB_1789 ketol-acid reductoisomerasechromosome CDS1876942 993 + 0.601208
ilvD CYB_1987 dihydroxy-acid dehydratasechromosome CDS2089024 1698 + 0.627797
ilvE CYB_0479 branched-chain amino acid aminotransferasechromosome CDS490117 921 - 0.576547
ilvN CYB_0971 acetolactate synthase, small subunitchromosome CDS1007584 525 + 0.571429
leuA CYB_1442 2-isopropylmalate synthasechromosome CDS1511096 1641 - 0.599025
leuB CYB_1631 3-isopropylmalate dehydrogenasechromosome CDS1701592 1116 + 0.612007
leuC CYB_0327 3-isopropylmalate dehydratase, large subunitchromosome CDS344054 1404 + 0.616809
leuD CYB_2021 3-isopropylmalate dehydratase, small subunitchromosome CDS2125297 603 + 0.61194
lysA CYB_1644 diaminopimelate decarboxylasechromosome CDS1715961 1380 + 0.617391
metE CYB_1886 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferasechromosome CDS1971812 2265 + 0.586755
metH CYB_2208 methionine synthasechromosome CDS2313604 3675 + 0.614694
nifS CYB_0419 cysteine desulfurasechromosome CDS427382 1191 + 0.634761
nifV CYB_0424 homocitrate synthase 1chromosome CDS434137 1188 + 0.62963
potA CYB_1301 spermidine/putrescine ABC transporter, ATP-binding proteinchromosome CDS1363354 1155 - 0.609524
potB CYB_1299 spermidine/putrescine ABC transporter, permease proteinchromosome CDS1362410 951 - 0.60673
potC CYB_2209 spermidine/putrescine ABC transporter, permease protein PotCchromosome CDS2317633 792 - 0.550505
proA CYB_0823 gamma-glutamyl phosphate reductasechromosome CDS853143 1368 + 0.61769
proB CYB_0519 glutamate 5-kinasechromosome CDS534374 1140 + 0.623684
proC CYB_1749 pyrroline-5-carboxylate reductasechromosome CDS1831100 804 + 0.636816
prs CYB_1652 ribose-phosphate pyrophosphokinasechromosome CDS1729152 999 + 0.584585
psaL-2 CYB_2826 photosystem I reaction center subunit XIchromosome CDS2927710 480 + 0.585417
selD CYB_1184 selenide, water dikinasechromosome CDS1222137 1068 + 0.605805
serA CYB_1383 D-3-phosphoglycerate dehydrogenasechromosome CDS1454116 1581 - 0.587603
speA CYB_2779 arginine decarboxylasechromosome CDS2872847 1923 - 0.609984
speB CYB_1744 agmatinasechromosome CDS1827309 924 + 0.638528
speE CYB_0058 spermidine synthasechromosome CDS70137 939 + 0.601704
thiO CYB_2393 glycine oxidase ThiOchromosome CDS2494156 1149 + 0.64839
thrB CYB_1902 homoserine kinasechromosome CDS1987414 927 - 0.608414
thrC-1 CYB_2298 threonine synthasechromosome CDS2403206 1059 - 0.628895
thrC-2 CYB_2820 threonine synthasechromosome CDS2921853 1341 - 0.609993
trpA CYB_0937 tryptophan synthase, alpha subunitchromosome CDS975617 816 + 0.636029
trpB CYB_1508 tryptophan synthase, beta subunitchromosome CDS1580596 1278 + 0.627543
trpC CYB_2343 indole-3-glycerol phosphate synthasechromosome CDS2450470 921 + 0.614549
trpD CYB_0050 anthranilate phosphoribosyltransferasechromosome CDS63176 1032 - 0.630814
trpE CYB_0535 anthranilate synthase component Ichromosome CDS549636 1521 - 0.612097
trpF CYB_0194 N-(5'phosphoribosyl)anthranilate isomerasechromosome CDS207847 702 + 0.625356
trpG CYB_2417 anthranilate synthase component IIchromosome CDS2514222 654 + 0.584098
tyrA CYB_0624 prephenate dehydrogenasechromosome CDS634116 891 + 0.593715
ureA CYB_2370 urease, gamma subunitchromosome CDS2476794 303 + 0.587459
ureC CYB_0023 urease, alpha subunitchromosome CDS28679 1719 + 0.605003