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2024-05-01 14:30:38

Gene list

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COG category: Amino acid transport and metabolism
Organism: Synechococcus sp. JA-3-3Ab, JA-3-3Ab

Number of genes found: 197

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Synechococcus sp. JA-3-3Ab, JA-3-3Ab
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA CYA_0015 hypothetical proteinchromosome CDS15513 528 - 0.568182
NA CYA_0685 cystine ABC transporter, cystine-binding proteinchromosome CDS691106 864 + 0.574074
NA CYA_2623 hydrophobic amino acid ABC transporter (HAAT) family, ATP-binding proteinchromosome CDS2640745 708 + 0.601695
NA CYA_1920 urea ABC transporter, ATP-binding proteinchromosome CDS1930962 765 - 0.515033
NA CYA_0086 glyoxalase family proteinchromosome CDS84185 411 + 0.639903
NA CYA_1237 polyamine ABC transporter, polyamine-binding proteinchromosome CDS1247911 1125 + 0.664889
NA CYA_1339 putative membrane proteinchromosome CDS1352022 1032 + 0.632752
NA CYA_2543 conserved hypothetical proteinchromosome CDS2563294 642 - 0.529595
NA CYA_0330 FAD-dependent oxidoreductasechromosome CDS347318 1104 + 0.65308
NA CYA_2674 polar amino acid ABC transporter (PAAT) family, amino acid-binding proteinchromosome CDS2690262 837 - 0.640382
NA CYA_2186 phospho-2-dehydro-3-deoxyheptonate aldolasechromosome CDS2205545 1071 - 0.635854
NA CYA_0268 peptide/opine/nickel ABC transporter (PepT) family, substrate-binding proteinchromosome CDS274000 1782 + 0.635802
NA CYA_0496 putative gamma-glutamyl phosphate reductasechromosome CDS510982 1302 - 0.619048
NA CYA_2527 peptidase, M17 (leucyl aminopeptidase) familychromosome CDS2546833 1533 - 0.641226
NA CYA_1925 peptidase, S9C (acylaminoacyl-peptidase) familychromosome CDS1936845 1935 + 0.622739
NA CYA_2891 aminotransferase, class Vchromosome CDS2915932 1227 + 0.678892
NA CYA_2510 transporter, solute:sodium symporter (SSS) familychromosome CDS2520824 1488 - 0.63172
NA CYA_0010 glyoxalase family proteinchromosome CDS11268 393 - 0.585242
NA CYA_0864 transporter, major facilitator familychromosome CDS871611 1251 - 0.613909
NA CYA_1002 Orn/Lys/Arg decarboxylasechromosome CDS1015046 1536 + 0.630208
NA CYA_2178 transporter, major facilitator familychromosome CDS2193986 1287 - 0.607615
NA CYA_2460 aminotransferase, classes I and IIchromosome CDS2471113 1236 + 0.626214
NA CYA_1308 oxidoreductase, FAD-dependentchromosome CDS1318030 1362 - 0.657856
NA CYA_2794 ferric iron ABC transporter (FeT) family, ATP-binding proteinchromosome CDS2812905 1197 + 0.6132
NA CYA_1285 polar amino amino acid ABC transporter (PAAT) family, ATP-binding proteinchromosome CDS1295889 789 + 0.558935
NA CYA_2121 conserved hypothetical proteinchromosome CDS2135901 588 + 0.591837
NA CYA_2478 hydrophobic amino acid ABC transporter (HAAT) family, permease proteinchromosome CDS2488854 960 - 0.620833
NA CYA_2089 collagen alpha 1(III) chainchromosome CDS2107234 450 - 0.662222
NA CYA_2615 conserved hypothetical proteinchromosome CDS2631196 663 - 0.473605
NA CYA_0686 cystine ABC transporter, permease proteinchromosome CDS692083 705 + 0.568794
NA CYA_2814 amino acid transporter, amino acid-binding proteinchromosome CDS2831691 801 + 0.662921
NA CYA_1924 urea ABC transporter, urea-binding proteinchromosome CDS1935173 1275 - 0.56549
NA CYA_1105 putative membrane proteinchromosome CDS1131148 654 - 0.555046
NA CYA_2183 starch binding domain proteinchromosome CDS2200785 2292 - 0.544066
NA CYA_1497 membrane protein/conserved domain proteinchromosome CDS1505724 2277 - 0.644269
NA CYA_1817 transporter, major facilitator familychromosome CDS1822540 1203 - 0.586035
NA CYA_2832 polyamine transporter, polyamine-binding proteinchromosome CDS2850743 1065 + 0.567136
NA CYA_1872 hypothetical proteinchromosome CDS1876803 318 + 0.528302
NA CYA_0150 peptide/opine/nickel ABC transporter (PepT) family, permease proteinchromosome CDS147371 1002 + 0.56487
NA CYA_1206 putative cysteine synthase Bchromosome CDS1216339 915 + 0.629508
NA CYA_0051 oligopeptide ABC transporter, permease proteinchromosome CDS49892 1113 - 0.627134
NA CYA_0151 peptide/opine/nickel ABC transporter (PepT) family, permease proteinchromosome CDS148369 894 + 0.587248
NA CYA_2555 prolyl oligopeptidasechromosome CDS2577070 2052 + 0.624756
NA CYA_1131 transporter, major facilitator familychromosome CDS1155508 1191 + 0.655751
NA CYA_1747 aspartate kinasechromosome CDS1751516 1827 + 0.643131
NA CYA_2585 urease, beta subunit, truncationchromosome CDS2609202 213 - 0.661972
NA CYA_0041 putative transporter, bacteriochlorophyll delivery (BCD) familychromosome CDS37430 1455 + 0.618557
NA CYA_1282 polar amino amino acid ABC transporter (PAAT) family, permease proteinchromosome CDS1292098 1206 - 0.618574
NA CYA_2622 hydrophobic amino acid ABC transporter (HAAT) family, ATP-binding proteinchromosome CDS2639930 819 + 0.598291
NA CYA_2877 zinc carboxypeptidasechromosome CDS2893463 630 + 0.630159
NA CYA_1064 NitT/TauT family ABC transporter, ATP-binding proteinchromosome CDS1079821 1374 - 0.610626
NA CYA_0391 cysteine desulfurase, SufS familychromosome CDS405906 1290 + 0.615504
NA CYA_2231 quaternary amine uptake ABC transporter (QAT) family, ATP-binding proteinchromosome CDS2246497 969 + 0.642931
NA CYA_0991 putative membrane proteinchromosome CDS1004332 909 + 0.616062
NA CYA_2020 peptidase M3B family, nonpeptidase-like proteinchromosome CDS2035763 1875 - 0.644267
NA CYA_1468 D-isomer specific 2-hydroxyacid dehydrogenase family proteinchromosome CDS1476143 927 - 0.658037
NA CYA_1922 urea ABC transporter, permease proteinchromosome CDS1932699 1209 - 0.545079
NA CYA_2362 OppBC ABC transporter family, permease proteinchromosome CDS2369787 1026 + 0.605263
NA CYA_0394 conserved hypothetical proteinchromosome CDS408911 678 + 0.59292
NA CYA_2571 quaternary amine ABC transporter (QAT) family, permease proteinchromosome CDS2597704 642 - 0.616822
NA CYA_0625 GDSL-like lipase/acylhydrolase domain proteinchromosome CDS635727 1056 + 0.666667
NA CYA_2142 putative aspartate ammonia-lyasechromosome CDS2154964 1386 - 0.636364
NA CYA_1304 methylenetetrahydrofolate reductase family proteinchromosome CDS1314340 912 - 0.662281
NA CYA_0700 putative proteasechromosome CDS706635 942 + 0.625265
NA CYA_0589 aminotransferase, classes I and IIchromosome CDS600076 1185 + 0.632911
NA CYA_2328 oxidoreductase, FAD-bindingchromosome CDS2331574 1200 + 0.6575
NA CYA_2642 transporter, folate-biopterin transporter (FBT) familychromosome CDS2656899 1413 - 0.629158
NA CYA_1216 aminotransferase, classes I and IIchromosome CDS1227848 1197 - 0.648287
NA CYA_2479 hydrophobic amino acid ABC transporter (HAAT) family, permease proteinchromosome CDS2489813 858 - 0.621212
NA CYA_0261 hypothetical proteinchromosome CDS265865 1002 - 0.623752
NA CYA_2621 hydrophobic amino acid ABC transporter (HAAT) family, amino acid-binding proteinchromosome CDS2638449 1254 - 0.617225
NA CYA_0920 conserved hypothetical proteinchromosome CDS929252 1086 - 0.634438
NA CYA_1964 putative acetolactate synthase, catabolicchromosome CDS1975121 1638 + 0.603785
NA CYA_1897 peptidase, S10 (carboxypeptidase Y) familychromosome CDS1907093 1530 - 0.627451
NA CYA_1709 aminotransferase, classes I and IIchromosome CDS1717994 1326 - 0.630468
NA CYA_0985 glycosyl transferase family proteinchromosome CDS998871 1041 + 0.615754
NA CYA_0535 arginase family proteinchromosome CDS550816 885 - 0.640678
NA CYA_1686 putative cytochromechromosome CDS1685534 525 - 0.626667
NA CYA_2800 putative hydantoin utilization protein Bchromosome CDS2818865 1590 - 0.677359
NA CYA_1923 urea ABC transporter, permease proteinchromosome CDS1933911 1158 - 0.600173
NA CYA_0441 putative membrane proteinchromosome CDS461090 894 - 0.638702
NA CYA_0562 glyoxalase family proteinchromosome CDS575343 420 + 0.590476
NA CYA_0600 hypothetical proteinchromosome CDS610837 267 + 0.59176
NA CYA_1706 peptidase, M24B familychromosome CDS1713944 1803 + 0.623405
NA CYA_2593 transporter, drug:H+ antiporter-1 (12 spanner) (DHA1) familychromosome CDS2615291 1290 - 0.633333
NA CYA_1791 putative hydantoin utilization protein Achromosome CDS1790928 2046 - 0.672043
NA CYA_0153 peptide/opine/nickel uptake ABC transporter (PepT) family, ATP-binding proteinchromosome CDS150183 675 + 0.583704
NA CYA_0097 transporter, major facilitator familychromosome CDS93643 1557 + 0.639692
NA CYA_1284 polar amino amino acid ABC transporter (PAAT) family, amino acid-binding proteinchromosome CDS1294588 1038 - 0.600193
NA CYA_1597 putative soluble hydrogenase, tritium exchange subunitchromosome CDS1607176 1161 + 0.64255
NA CYA_0566 2-isopropylmalate synthase/homocitrate synthase family proteinchromosome CDS579514 1668 - 0.632494
NA CYA_1283 polar amino amino acid ABC transporter (PAAT) family, permease proteinchromosome CDS1293307 1173 - 0.618073
NA CYA_0149 peptide/opine/nickel ABC transporter (PepT) family, substrate-binding proteinchromosome CDS145761 1626 + 0.557811
NA CYA_0478 putative 4-hydroxyphenylpyruvate dioxygenasechromosome CDS496453 1053 + 0.649573
NA CYA_0782 putative membrane-bound proteasechromosome CDS787481 2367 - 0.636248
NA CYA_2771 conserved hypothetical proteinchromosome CDS2792561 459 - 0.575163
NA CYA_1460 prephenate dehydratasechromosome CDS1465840 900 - 0.623333
NA CYA_0574 S-adenosylmethionine decarboxylase proenzymechromosome CDS587313 459 + 0.579521
NA CYA_0367 glyoxalase family proteinchromosome CDS383965 444 - 0.617117
NA CYA_1467 isopropylmalate/isohomocitrate dehydrogenase family proteinchromosome CDS1475005 1107 + 0.593496
NA CYA_0152 peptide/opine/nickel uptake ABC transporter (PepT) family, ATP-binding proteinchromosome CDS149267 930 + 0.616129
NA CYA_0224 hydrophobic amino acid uptake ABC transporter (HAAT) family, amino acid-binding proteinchromosome CDS227551 1401 - 0.658815
NA CYA_0228 polar amino acid uptake ABC transporter (PAAT) family, ATP-binding protein, truncationchromosome CDS231451 378 - 0.589947
NA CYA_1950 conserved hypothetical proteinchromosome CDS1962899 438 - 0.625571
NA CYA_0931 L-asparaginase, thermolabilechromosome CDS940421 954 + 0.640461
NA CYA_2232 quaternary amine uptake ABC transporter (QAT) family, permease proteinchromosome CDS2247462 618 + 0.644013
ald CYA_1112 alanine dehydrogenasechromosome CDS1140938 1092 + 0.666667
argB CYA_0310 acetylglutamate kinasechromosome CDS317853 903 + 0.625692
argC CYA_0652 N-acetyl-gamma-glutamyl-phosphate reductasechromosome CDS659997 1107 + 0.628726
argD CYA_1537 acetylornithine transaminasechromosome CDS1546079 1257 + 0.645187
argF CYA_2817 ornithine carbamoyltransferasechromosome CDS2835539 945 - 0.630688
argG CYA_0710 argininosuccinate synthasechromosome CDS717300 1212 - 0.658416
argH CYA_0103 argininosuccinate lyasechromosome CDS98857 1470 + 0.626531
argJ CYA_1327 arginine biosynthesis bifunctional protein ArgJchromosome CDS1341633 1221 - 0.634726
aroA CYA_2296 3-phosphoshikimate 1-carboxyvinyltransferasechromosome CDS2298436 1335 - 0.659925
aroB CYA_1866 3-dehydroquinate synthasechromosome CDS1871350 1212 + 0.627888
aroC CYA_0336 chorismate synthasechromosome CDS355019 1137 - 0.679859
aroE CYA_2729 shikimate 5-dehydrogenasechromosome CDS2744659 876 + 0.664384
aroH CYA_0836 chorismate mutasechromosome CDS844397 375 + 0.621333
aroK CYA_2646 shikimate kinasechromosome CDS2661750 570 + 0.645614
aroQ CYA_0718 3-dehydroquinate dehydratasechromosome CDS722265 504 + 0.587302
asd CYA_1867 aspartate-semialdehyde dehydrogenasechromosome CDS1872540 1008 + 0.628968
aspC CYA_0815 aspartate aminotransferasechromosome CDS825882 1185 + 0.63038
carA CYA_0195 carbamoyl-phosphate synthase, small subunitchromosome CDS195697 1188 - 0.660774
carB CYA_1749 carbamoyl-phosphate synthase, large subunitchromosome CDS1754923 3225 - 0.629457
cefD CYA_0818 isopenicillin N-epimerasechromosome CDS829654 1140 + 0.65614
cobD-2 CYA_0941 L-threonine-O-3-phosphate decarboxylasechromosome CDS951486 1146 + 0.644852
cysE CYA_0556 serine O-acetyltransferasechromosome CDS570096 804 - 0.604478
cysH CYA_1123 phosophoadenylyl-sulfate reductasechromosome CDS1150395 747 + 0.630522
cysK CYA_1702 cysteine synthase Achromosome CDS1708008 981 + 0.62895
dapA CYA_0627 dihydrodipicolinate synthasechromosome CDS638904 921 - 0.558089
dapB CYA_1305 dihydrodipicolinate reductasechromosome CDS1313462 882 + 0.643991
dapF CYA_1324 diaminopimelate epimerasechromosome CDS1340188 858 - 0.656177
gcvH CYA_0482 glycine cleavage system H proteinchromosome CDS500300 390 + 0.584615
gcvP CYA_2098 glycine dehydrogenasechromosome CDS2113505 2931 + 0.647219
gcvT CYA_1242 glycine cleavage system T proteinchromosome CDS1255463 1137 - 0.631486
ggt CYA_2484 gamma-glutamyltransferasechromosome CDS2495197 1647 - 0.641166
glnA CYA_1363 glutamine synthetase, type Ichromosome CDS1373605 1425 + 0.581754
glnB CYA_1508 nitrogen regulatory protein P-IIchromosome CDS1516789 339 - 0.525074
gloA CYA_1244 lactoylglutathione lyasechromosome CDS1256666 435 + 0.602299
gltS CYA_2704 ferredoxin-dependent glutamate synthasechromosome CDS2721145 4608 - 0.649306
glyA CYA_2015 serine hydroxymethyltransferasechromosome CDS2031422 1305 + 0.640613
hisA CYA_2513 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerasechromosome CDS2524851 786 + 0.664122
hisB CYA_2626 imidazoleglycerol-phosphate dehydratasechromosome CDS2644293 621 - 0.618357
hisC CYA_1885 histidinol-phosphate aminotransferasechromosome CDS1890397 1062 + 0.62806
hisD CYA_0591 histidinol dehydrogenasechromosome CDS602408 1314 + 0.656012
hisF CYA_2282 imidazoleglycerol phosphate synthase, cyclase subunitchromosome CDS2287904 762 + 0.665354
hisG CYA_1232 ATP phosphoribosyltransferasechromosome CDS1243652 750 + 0.637333
hisH CYA_0969 imidazole glycerol phosphate synthase, glutamine amidotransferase subunitchromosome CDS980722 651 - 0.625192
hisIE CYA_0504 histidine biosynthesis bifunctional protein HisIEchromosome CDS520709 696 - 0.622126
hisZ CYA_1524 ATP phosphoribosyltransferase regulatory subunitchromosome CDS1534364 1233 + 0.639092
hom CYA_1100 homoserine dehydrogenasechromosome CDS1124636 1347 + 0.653304
ilvA CYA_0143 threonine dehydratasechromosome CDS137266 1512 - 0.631614
ilvB CYA_2073 acetolactate synthase, large subunit, biosynthetic typechromosome CDS2093190 1797 - 0.627713
ilvC CYA_0246 ketol-acid reductoisomerasechromosome CDS250107 993 + 0.609265
ilvD CYA_1697 dihydroxy-acid dehydratasechromosome CDS1699913 1698 - 0.644287
ilvE CYA_1005 branched-chain amino acid aminotransferasechromosome CDS1018844 921 + 0.602606
ilvN CYA_2130 acetolactate synthase, small subunitchromosome CDS2145309 525 + 0.588571
leuA CYA_2223 2-isopropylmalate synthasechromosome CDS2238391 1641 + 0.621572
leuB CYA_1798 3-isopropylmalate dehydrogenasechromosome CDS1798607 1146 + 0.623909
leuC CYA_0286 3-isopropylmalate dehydratase, large subunitchromosome CDS294018 1404 + 0.63604
leuD CYA_2201 3-isopropylmalate dehydratase, small subunitchromosome CDS2219056 588 - 0.630952
lysA CYA_2895 diaminopimelate decarboxylasechromosome CDS2919862 1377 - 0.630356
metE-1 CYA_0148 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferasechromosome CDS142592 2265 - 0.586313
metE-2 CYA_0167 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferasechromosome CDS164140 2244 - 0.620321
metH CYA_2411 methionine synthasechromosome CDS2420392 3660 + 0.639618
nifS CYA_1826 cysteine desulfurasechromosome CDS1831239 1191 - 0.638959
nifV CYA_1820 homocitrate synthase NifVchromosome CDS1824491 1188 - 0.627104
potA CYA_1859 spermidine/putrescine ABC transporter, ATP-binding proteinchromosome CDS1863839 1134 - 0.636684
potB CYA_1858 spermidine/putrescine ABC transporter, permease proteinchromosome CDS1862898 948 - 0.639241
potC CYA_2412 spermidine/putrescine ABC transporter, permease protein PotCchromosome CDS2424056 774 - 0.599483
proA CYA_2820 gamma-glutamyl phosphate reductasechromosome CDS2838133 1368 + 0.641813
proB CYA_2177 glutamate 5-kinasechromosome CDS2192866 1116 + 0.641577
proC CYA_0863 pyrroline-5-carboxylate reductasechromosome CDS869558 804 + 0.649254
prs CYA_2887 ribose-phosphate pyrophosphokinasechromosome CDS2906453 999 - 0.610611
psaL-1 CYA_0035 photosystem I reaction center subunit XIchromosome CDS33590 471 + 0.566879
psbX-1 CYA_2558 photosystem II reaction center protein PsbXchromosome CDS2581637 117 + 0.581197
psbX-2 CYA_2600 photosystem II reaction center protein PsbXchromosome CDS2619212 117 - 0.57265
selD CYA_0055 selenide, water dikinasechromosome CDS52802 1059 - 0.645892
serA CYA_1354 D-3-phosphoglycerate dehydrogenasechromosome CDS1364668 1584 - 0.609848
speA CYA_0128 arginine decarboxylasechromosome CDS119962 1926 - 0.63188
speB CYA_0859 agmatinasechromosome CDS866403 906 + 0.662252
speE CYA_0575 spermidine synthasechromosome CDS587800 939 + 0.628328
thiO CYA_1058 glycine oxidase ThiOchromosome CDS1073890 1137 - 0.647318
thrB CYA_1622 homoserine kinasechromosome CDS1625731 921 + 0.628664
thrC-1 CYA_0298 threonine synthasechromosome CDS304116 1341 + 0.633855
thrC-2 CYA_2454 threonine synthasechromosome CDS2460477 1059 - 0.657224
trpA-1 CYA_0223 tryptophan synthase, alpha subunitchromosome CDS226682 816 - 0.667892
trpA-2 CYA_1290 tryptophan synthase, alpha subunitchromosome CDS1299385 846 + 0.626478
trpB CYA_0339 tryptophan synthase, beta subunitchromosome CDS357668 1200 - 0.6475
trpC CYA_2369 indole-3-glycerol phosphate synthasechromosome CDS2379498 921 + 0.613464
trpD CYA_0630 anthranilate phosphoribosyltransferasechromosome CDS641898 1032 - 0.638566
trpE CYA_2136 anthranilate synthase component Ichromosome CDS2149406 1497 + 0.641283
trpF CYA_0771 N-(5'phosphoribosyl)anthranilate isomerasechromosome CDS778523 681 + 0.628488
trpG CYA_2654 anthranilate synthase component IIchromosome CDS2671274 636 + 0.619497
tyrA CYA_2300 prephenate dehydrogenasechromosome CDS2302545 861 - 0.624855
ureC CYA_0603 urease, alpha subunitchromosome CDS611850 1710 + 0.599415