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2024-04-29 05:04:28

Gene list

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COG category: Amino acid transport and metabolism
Organism: Salinibacter ruber DSM 13855, DSM 13855; M31

Number of genes found: 227

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Salinibacter ruber DSM 13855, DSM 13855; M31
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SRU_1482 conserved hypothetical proteinchromosome CDS1847065 516 + 0.629845
NA SRU_1268 probable class-V aminotransferasechromosome CDS1597908 1329 - 0.698269
NA SRU_2039 cysteine synthase Bchromosome CDS2523867 954 + 0.710692
NA SRU_0717 Phenylalanine and histidine ammonia-lyasechromosome CDS925441 1554 + 0.714286
NA SRU_0371 Na+/proline symporterchromosome CDS510792 1845 + 0.682927
NA SRU_2363 Cys/Met metabolism PLP-dependent enzyme superfamilychromosome CDS2940075 1239 + 0.677159
NA SRU_0815 ribose-phosphate pyrophosphokinasechromosome CDS1037621 963 - 0.658359
NA SRU_2257 Na-K-Cl cotransporter, putativechromosome CDS2800999 2448 + 0.671569
NA SRU_2034 acyl-peptide hydrolase, putativechromosome CDS2517751 2073 + 0.698987
NA SRU_2720 probable acylaminoacyl-peptidase, putativechromosome CDS3362397 2880 - 0.691667
NA SRU_1685 chorismate binding enzymechromosome CDS2089860 1848 - 0.693723
NA SRU_2765 X-Pro dipeptidyl-peptidasechromosome CDS3420657 2820 - 0.656028
NA SRU_0469 hypothetical proteinchromosome CDS628448 1026 - 0.60039
NA SRU_2662 hypothetical proteinchromosome CDS3299504 489 - 0.699386
NA SRU_2016 conserved hypothetical proteinchromosome CDS2496734 369 - 0.644986
NA SRU_2846 Sugar transporter subfamilychromosome CDS3521487 1530 + 0.637909
NA SRU_0709 IMP dehydrogenase / GMP reductase domain, putativechromosome CDS918881 1152 + 0.690104
NA SRU_2715 Succinylglutamate desuccinylase / Aspartoacylase familychromosome CDS3357441 771 - 0.67834
NA SRU_1380 glyoxalase family proteinchromosome CDS1730905 417 - 0.645084
NA SRU_1259 D-lactate dehydrogenase, putativechromosome CDS1582138 1197 + 0.720134
NA SRU_1573 glyoxalase family proteinchromosome CDS1955355 1320 + 0.696212
NA SRU_0427 amine oxidase, flavin-containingchromosome CDS574708 1083 + 0.773777
NA SRU_0837 tyrosine decarboxylase, putativechromosome CDS1066209 2529 - 0.694741
NA SRU_1879 hypothetical proteinchromosome CDS2320105 1149 - 0.743255
NA SRU_1882 peptidase, M20/M25/M40 familychromosome CDS2323603 1371 + 0.689278
NA SRU_2178 putative outer membrane protein, probably involved in nutrient bindingchromosome CDS2696272 3315 - 0.630769
NA SRU_0150 vitamin B12-dependent methionine synthase family proteinchromosome CDS206432 963 - 0.720665
NA SRU_0542 aminotransferase, class IV superfamilychromosome CDS718212 840 - 0.709524
NA SRU_1739 transporter, major facilitator familychromosome CDS2148671 1098 - 0.70765
NA SRU_2220 peptidase, M20A familychromosome CDS2752611 1086 + 0.703499
NA SRU_1933 Peptidase family T4chromosome CDS2391001 1224 - 0.726307
NA SRU_0537 peptidasechromosome CDS710822 2031 - 0.682422
NA SRU_1509 oxidoreductase, zinc-binding dehydrogenase familychromosome CDS1877681 1029 - 0.639456
NA SRU_1749 peptidase, M20/M25/M40 familychromosome CDS2160817 1518 - 0.700922
NA SRU_1656 conserved hypothetical proteinchromosome CDS2056324 603 - 0.655058
NA SRU_2307 major facilitator superfamily proteinchromosome CDS2872540 1224 - 0.716503
NA SRU_2146 acetolactate synthase small subunitchromosome CDS2654252 723 + 0.626556
NA SRU_1661 Vitamin K epoxide reductase familychromosome CDS2063371 1239 - 0.637611
NA SRU_2827 Nitrogen regulatory protein P-IIchromosome CDS3494759 339 + 0.699115
NA SRU_1435 putative dihydrodipicolinate synthasechromosome CDS1786944 939 - 0.70181
NA SRU_0454 carboxypeptidase G2chromosome CDS608693 1242 + 0.728663
NA SRU_1674 Integral membrane protein DUF6chromosome CDS2078538 945 - 0.724868
NA SRU_0432 glycine betaine/L-proline transport system permease protein proWchromosome CDS578719 879 + 0.650739
NA SRU_0666 Amidinotransferase superfamilychromosome CDS868908 1308 + 0.671254
NA SRU_2203 GDSL-like lipase/acylhydrolase domain proteinchromosome CDS2732735 1728 + 0.697917
NA SRU_0391 putative dipeptidasechromosome CDS532643 1185 + 0.721519
NA SRU_2366 hypothetical proteinchromosome CDS2943474 456 - 0.596491
NA SRU_0433 ABC transporter, substrate-binding proteinchromosome CDS579777 954 + 0.639413
NA SRU_1097 hypothetical proteinchromosome CDS1380283 267 + 0.621723
NA SRU_1246 3-hydroxy-3-methylglutaryl-CoA lyasechromosome CDS1563682 924 + 0.690476
NA SRU_0546 Proline dehydrogenase superfamilychromosome CDS721429 861 + 0.649245
NA SRU_1375 Zn-dependent aminopeptidase, putativechromosome CDS1725067 3177 - 0.657224
NA SRU_1133 lysine 2,3-aminomutase YodO family proteinchromosome CDS1426204 1206 - 0.660862
NA SRU_1286 sodium/alanine symporterchromosome CDS1623361 2079 + 0.645503
NA SRU_2255 glutamate dehydrogenase, short peptidechromosome CDS2797093 1662 - 0.652828
NA SRU_2741 glyoxalase family proteinchromosome CDS3390010 951 + 0.721346
NA SRU_1103 conserved hypothetical proteinchromosome CDS1389684 651 + 0.605223
NA SRU_0171 hypothetical proteinchromosome CDS233961 651 - 0.623656
NA SRU_1195 Amidinotransferase superfamilychromosome CDS1506650 894 - 0.6566
NA SRU_1324 aspartate aminotransferasechromosome CDS1667134 1194 + 0.679229
NA SRU_2485 carboxypeptidasechromosome CDS3087668 1506 + 0.699203
NA SRU_1188 aminotransferase, class V superfamilychromosome CDS1499450 1377 + 0.661583
NA SRU_1497 aminopeptidase P, putativechromosome CDS1864039 1071 + 0.626517
NA SRU_1149 aminotransferase, class V superfamilychromosome CDS1445566 1515 + 0.708251
NA SRU_2473 ABC transporter, ATP-binding protein, putativechromosome CDS3075217 756 + 0.703704
NA SRU_1682 PHP domain proteinchromosome CDS2083984 1731 + 0.683998
NA SRU_1319 dipeptidyl-peptidasechromosome CDS1660605 2466 - 0.660584
NA SRU_0482 bifunctional aspartokinase/homoserine dehydrogenase Ichromosome CDS652742 1125 + 0.717333
NA SRU_0938 aspartate aminotransferasechromosome CDS1202963 1215 + 0.682305
NA SRU_2401 acylaminoacyl-peptidasechromosome CDS2993419 2112 + 0.689394
NA SRU_1677 putative (NAD+) isocitrate dehydrogenase ^chromosome CDS2079955 1023 - 0.645161
NA SRU_1665 para-aminobenzoate/anthranilate synthase glutamine amidotransferasecomponent IIchromosome CDS2068274 603 + 0.666667
NA SRU_2259 Na-K-Cl cotransporter, putativechromosome CDS2806267 2265 + 0.664018
NA SRU_2561 permease, major facilitator superfamily, putativechromosome CDS3183248 1197 - 0.691729
NA SRU_1016 hypothetical proteinchromosome CDS1296386 765 - 0.623529
NA SRU_2102 molybdopterin oxidoreductase membrane subunit, putativechromosome CDS2596818 1140 - 0.629825
NA SRU_0691 bifunctional aspartokinase/homoserine dehydrogenase Ichromosome CDS898488 2466 - 0.705191
NA SRU_0920 Renal dipeptidase superfamilychromosome CDS1177308 1221 - 0.68059
NA SRU_1296 Asparaginase superfamilychromosome CDS1633353 1038 + 0.736994
NA SRU_2433 metal-activated pyridoxal enzymechromosome CDS3039773 1167 + 0.710368
NA SRU_1018 phosphoribosyl-AMP cyclohydrolase domain proteinchromosome CDS1297627 384 + 0.666667
NA SRU_0374 transporter, solute:sodium symporter (SSS) family proteinchromosome CDS516877 1905 + 0.688189
NA SRU_0922 truncated methionine synthase-like proteinchromosome CDS1179536 1071 + 0.677871
NA SRU_0381 carboxypeptidase-related proteinchromosome CDS520961 1611 - 0.661701
NA SRU_1417 conserved hypothetical proteinchromosome CDS1774087 1242 - 0.693237
NA SRU_2069 tryptophan 5-hydroxylase 1chromosome CDS2564321 837 - 0.642772
NA SRU_0301 diaminopimelate decarboxylasechromosome CDS402598 2613 + 0.718714
NA SRU_1373 FAD dependent oxidoreductase, putativechromosome CDS1723266 1227 + 0.719641
NA SRU_0113 putative hydantoinase/oxoprolinasechromosome CDS144543 1620 - 0.730864
NA SRU_0720 conserved hypothetical proteinchromosome CDS931407 435 - 0.71954
NA SRU_0049 aminopeptidasechromosome CDS46066 1233 + 0.686131
NA SRU_1161 cystathionine beta-lyase MetCchromosome CDS1461993 1227 - 0.680522
NA SRU_1708 beta-eliminating lyasechromosome CDS2116819 1416 + 0.668079
NA SRU_2787 cysteine synthase Bchromosome CDS3446368 1401 + 0.662384
NA SRU_1793 LAO/AO transport system ATPasechromosome CDS2216891 1038 + 0.695568
NA SRU_0434 glycine betaine ABC transporter glycine betaine-binding protein, putativechromosome CDS580893 1020 + 0.669608
NA SRU_1858 cysteine desulfurasechromosome CDS2294391 1287 - 0.697747
NA SRU_2838 hypothetical proteinchromosome CDS3508068 477 + 0.685535
NA SRU_2154 2-isopropylmalate synthase/homocitrate synthase family proteinchromosome CDS2663716 1659 + 0.683544
NA SRU_2868 ABC transporter substrate-binding proteinchromosome CDS3549101 1185 + 0.635443
NA SRU_2056 Nitrogen regulatory protein P-IIchromosome CDS2543446 357 - 0.613445
NA SRU_2218 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain familychromosome CDS2750481 1059 + 0.725212
NA SRU_2398 iron(III) ABC transporter, ATP-binding proteinchromosome CDS2989270 1092 - 0.706044
NA SRU_2489 3-deoxy-7-phosphoheptulonate synthasechromosome CDS3093531 1359 + 0.688742
NA SRU_p0010 hypothetical proteinpSR35 CDS10560 459 + 0.51634
NA SRU_2779 sodium:solute symporter family proteinchromosome CDS3437463 1629 + 0.641498
NA SRU_1019 proline permease ^, putativechromosome CDS1298013 1437 - 0.698678
NA SRU_1232 glycine oxidase, putativechromosome CDS1549632 1227 - 0.703341
NA SRU_1123 cystathionine beta-synthasechromosome CDS1414131 1518 - 0.629776
NA SRU_2799 acetylornithine deacetylasechromosome CDS3456667 1119 + 0.69437
NA SRU_2050 hypothetical proteinchromosome CDS2538153 204 - 0.730392
NA SRU_0728 phosphoribosyl-ATP pyrophosphohydrolasechromosome CDS943469 264 - 0.621212
NA SRU_0943 hypothetical proteinchromosome CDS1208870 798 - 0.695489
NA SRU_1021 amino acid permease family proteinchromosome CDS1300333 1362 - 0.699706
NA SRU_1346 integral membrane protein, putativechromosome CDS1693663 933 + 0.678457
NA SRU_2344 glyoxalase family proteinchromosome CDS2917837 537 - 0.614525
NA SRU_0173 conserved hypothetical proteinchromosome CDS237008 3726 + 0.671498
NA SRU_2054 glyoxalase family proteinchromosome CDS2541809 810 - 0.709877
NA SRU_0365 putative sugar transporterchromosome CDS498678 1260 + 0.725397
NA SRU_1962 proton/peptide symporter family proteinchromosome CDS2426242 1836 - 0.673203
NA SRU_1307 integral membrane proteinchromosome CDS1646977 1089 - 0.665748
NA SRU_2217 aminotransferase, class III superfamilychromosome CDS2749223 1188 + 0.71633
NA SRU_0669 D-3-phosphoglycerate dehydrogenasechromosome CDS872435 1539 - 0.671215
NA SRU_2529 GMC oxidoreductase familychromosome CDS3141536 1734 - 0.67301
NA SRU_1990 hypothetical proteinchromosome CDS2460591 513 - 0.662768
NA SRU_0647 putative chorismate mutasechromosome CDS845454 480 + 0.733333
NA SRU_1231 pyridoxal-dependent decarboxylase family protein, putativechromosome CDS1548173 1413 - 0.70913
NA SRU_1258 L-2,4-diaminobutyrate decarboxylasechromosome CDS1580417 1557 + 0.692357
NA SRU_0869 conserved hypothetical proteinchromosome CDS1110730 543 - 0.710866
NA SRU_1726 Zinc carboxypeptidase superfamilychromosome CDS2134771 1059 - 0.664778
NA SRU_1604 aminopeptidase M1 family proteinchromosome CDS1995378 1650 - 0.695758
NA SRU_0136 conserved hypothetical proteinchromosome CDS183046 522 + 0.618774
NA SRU_1488 hypothetical proteinchromosome CDS1854270 387 - 0.594315
NA SRU_0177 5-oxoprolinasechromosome CDS246627 2103 - 0.740846
NA SRU_1368 cystathionine beta-lyase MetCchromosome CDS1716863 1149 - 0.671889
NA SRU_0139 hypothetical proteinchromosome CDS186124 471 + 0.651805
NA SRU_2312 amino acid permease family proteinchromosome CDS2877738 1338 + 0.673393
NA SRU_0799 aminotransferase, class III superfamilychromosome CDS1013977 1389 + 0.649388
NA SRU_1894 putative metallopeptidasechromosome CDS2339177 1653 - 0.707199
ald SRU_0902 alanine dehydrogenasechromosome CDS1158965 1224 - 0.670752
ansA SRU_1709 L-asparaginasechromosome CDS2118242 1089 - 0.704316
argB SRU_2219 acetylglutamate kinasechromosome CDS2751673 804 + 0.705224
argB SRU_1732 acetylglutamate kinasechromosome CDS2141554 744 - 0.680108
argC SRU_2216 N-acetyl-gamma-glutamyl-phosphate reductasechromosome CDS2748091 1062 + 0.699623
argG SRU_2214 argininosuccinate synthasechromosome CDS2745512 1242 + 0.694847
argH SRU_2221 argininosuccinate lyasechromosome CDS2753764 1314 + 0.727549
aroA SRU_0674 3-phosphoshikimate 1-carboxyvinyltransferasechromosome CDS878852 1293 + 0.699923
aroB SRU_1526 3-dehydroquinate synthasechromosome CDS1897074 1104 + 0.660326
aroC SRU_2063 chorismate synthasechromosome CDS2555036 1215 - 0.703704
aroE SRU_2277 shikimate 5-dehydrogenasechromosome CDS2834406 858 + 0.740093
aroK SRU_0663 shikimate kinasechromosome CDS867025 615 - 0.707317
aroQ SRU_0492 3-dehydroquinate dehydratase, type IIchromosome CDS667561 429 + 0.685315
asd SRU_1838 aspartate-semialdehyde dehydrogenasechromosome CDS2272220 1092 - 0.701465
asg SRU_2761 asparaginasechromosome CDS3415880 1212 - 0.670792
aspB SRU_1781 aspartate aminotransferasechromosome CDS2201376 1233 - 0.651257
aspG SRU_2652 asparaginasechromosome CDS3288340 936 - 0.690171
carA SRU_0959 carbamoyl-phosphate synthase, small subunitchromosome CDS1224443 1161 + 0.677864
carB SRU_0960 carbamoyl-phosphate synthase, large subunitchromosome CDS1225724 2829 + 0.650053
cat2 SRU_2260 cationic amino acid transporterchromosome CDS2808610 1347 + 0.686711
cat3 SRU_2263 cationic amino acid transporterchromosome CDS2811503 1362 - 0.651982
cat4 SRU_2274 cationic amino acid transporterchromosome CDS2825819 2211 + 0.709634
cat5 SRU_2275 cationic amino acid transporterchromosome CDS2828198 2136 + 0.672285
cysD SRU_0479 O-acetylhomoserine sulfhydrylasechromosome CDS649032 1413 + 0.670913
cysD SRU_0580 sulfate adenylate transferase, subunit 2chromosome CDS764276 906 + 0.649007
cysH SRU_0422 phosophoadenylyl-sulfate reductase subfamilychromosome CDS569303 759 + 0.665349
dapA SRU_1080 dihydrodipicolinate synthasechromosome CDS1350168 909 - 0.69967
dapB SRU_1081 dihydrodipicolinate reductasechromosome CDS1351133 711 - 0.68917
dapD SRU_0969 2,3,4,5-tetrahydropyridine-2,6-dicarboxylateN-su ccinyltransferasechromosome CDS1235119 843 - 0.689205
dapF SRU_1415 diaminopimelate epimerasechromosome CDS1769969 858 + 0.689977
gcvH SRU_2076 glycine cleavage system H proteinchromosome CDS2571488 375 - 0.629333
gcvP SRU_1257 glycine dehydrogenasechromosome CDS1577021 2943 - 0.680938
gcvT SRU_1617 glycine cleavage system T proteinchromosome CDS2011330 1125 + 0.678222
gdhA SRU_0505 glutamate dehydrogenasechromosome CDS677767 1305 + 0.664368
ggt SRU_0895 gamma-glutamyltransferasechromosome CDS1150913 1827 + 0.679256
ggt SRU_2660 gamma-glutamyltransferasechromosome CDS3296955 2034 + 0.694199
glnA SRU_0385 glutamine synthetase, type Ichromosome CDS525778 1398 + 0.665236
gltB SRU_1169 glutamate synthase, large subunitchromosome CDS1471008 4545 + 0.677448
gltD SRU_1170 glutamate synthases, NADH/NADPH, small subunit subfamilychromosome CDS1475627 1581 + 0.70272
glyA SRU_0775 serine hydroxymethyltransferasechromosome CDS986911 1299 + 0.667436
hisA SRU_1564 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerasechromosome CDS1948281 777 + 0.675676
hisB SRU_1559 imidazoleglycerol-phosphate dehydratasechromosome CDS1945096 609 + 0.70936
hisC SRU_2128 histidinol-phosphate aminotransferasechromosome CDS2633151 1065 + 0.665728
hisD SRU_2127 histidinol dehydrogenasechromosome CDS2631543 1467 + 0.693252
hisF SRU_1565 imidazoleglycerol phosphate synthase, cyclase subunitchromosome CDS1949098 807 + 0.710037
hisG SRU_0727 ATP phosphoribosyltransferasechromosome CDS942493 852 - 0.666667
hisH SRU_1561 imidazole glycerol phosphate synthase, glutamine amidotransferase subunitchromosome CDS1946733 657 + 0.678843
hppD SRU_1370 4-hydroxyphenylpyruvate dioxygenasechromosome CDS1720011 1155 - 0.627706
hutH SRU_0722 histidine ammonia-lyasechromosome CDS933270 1494 + 0.702142
ilvA SRU_2287 threonine dehydratasechromosome CDS2843185 1413 + 0.685067
ilvA SRU_1270 threonine dehydratasechromosome CDS1601816 996 - 0.71988
ilvB SRU_2145 acetolactate synthase, large subunit, biosynthetic typechromosome CDS2652438 1791 + 0.677834
ilvC SRU_2147 ketol-acid reductoisomerasechromosome CDS2655058 1047 + 0.65616
ilvD SRU_2153 dihydroxy-acid dehydratasechromosome CDS2661829 1839 + 0.686243
ilvE SRU_2317 branched-chain amino acid aminotransferasechromosome CDS2887237 942 - 0.644374
leuA SRU_2149 2-isopropylmalate synthasechromosome CDS2657454 1641 + 0.68312
leuB SRU_2148 3-isopropylmalate dehydrogenasechromosome CDS2656040 1239 + 0.700565
leuC SRU_2150 3-isopropylmalate dehydratase, large subunitchromosome CDS2659227 1419 + 0.694151
leuD SRU_2152 3-isopropylmalate dehydratase, small subunitchromosome CDS2661190 618 + 0.661812
lys1 SRU_2554 saccharopine dehydrogenasechromosome CDS3175947 1251 - 0.664269
lysC SRU_0481 aspartate kinasechromosome CDS651765 954 + 0.72956
lysC SRU_1745 aspartate kinasechromosome CDS2156419 933 - 0.706324
metE SRU_1269 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferasechromosome CDS1599300 2310 + 0.683117
metF SRU_2094 5,10-methylenetetrahydrofolate reductasechromosome CDS2589658 960 - 0.609375
metX SRU_0480 homoserine O-acetyltransferasechromosome CDS650575 1059 + 0.691218
panF SRU_1998 pantothenate permeasechromosome CDS2470577 1503 + 0.70326
pdxB SRU_2082 erythronate-4-phosphate dehydrogenasechromosome CDS2576703 1179 - 0.709076
pepF SRU_1312 oligoendopeptidase Fchromosome CDS1650943 1824 + 0.666667
pepP SRU_1805 Xaa-Pro dipeptidasechromosome CDS2231430 1449 + 0.679089
pheA SRU_1955 prephenate dehydratasechromosome CDS2418897 861 - 0.696864
proA SRU_1253 gamma-glutamyl phosphate reductasechromosome CDS1571703 1311 + 0.684973
proB SRU_1252 glutamate 5-kinasechromosome CDS1570464 1131 + 0.699381
proC SRU_1560 pyrroline-5-carboxylate reductasechromosome CDS1945831 819 + 0.681319
proV SRU_0431 glycine betaine/L-proline transport ATP binding proteinchromosome CDS577551 1098 + 0.65847
prsA SRU_0459 ribose-phosphate pyrophosphokinasechromosome CDS615844 978 + 0.676892
serC SRU_2207 phosphoserine aminotransferasechromosome CDS2737825 1110 - 0.671171
sufS SRU_1384 cysteine desulfurases, SufS subfamilychromosome CDS1734084 1257 - 0.667462
thiO SRU_1233 glycine oxidase ThiOchromosome CDS1550758 1272 + 0.685535
thrB SRU_0690 homoserine kinasechromosome CDS897377 897 - 0.735786
thrC SRU_2377 threonine synthasechromosome CDS2956014 1317 - 0.704632
trpA SRU_1670 tryptophan synthase, alpha subunitchromosome CDS2072917 837 + 0.679809
trpB SRU_1669 tryptophan synthase, beta subunitchromosome CDS2071644 1221 + 0.692056
trpC SRU_1667 indole-3-glycerol phosphate synthasechromosome CDS2070017 813 + 0.671587
trpD SRU_1666 anthranilate phosphoribosyltransferasechromosome CDS2068922 1035 + 0.683092
trpE SRU_1662 anthranilate synthase component Ichromosome CDS2064907 1572 + 0.687023
trpF SRU_1668 N-(5'phosphoribosyl)anthranilate isomerasechromosome CDS2070900 666 + 0.666667
tyrA SRU_1616 Prephenate dehydrogenasechromosome CDS2010058 1146 + 0.700698
ybjU SRU_1423 L-allo-threonine aldolasechromosome CDS1777644 1047 - 0.702961