Gene list
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COG category: Amino acid transport and metabolism
Organism: Thiobacillus denitrificans ATCC 25259, ATCC 25259
Number of genes found: 172
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| Thiobacillus denitrificans ATCC 25259, ATCC 25259 | ||||||||
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| Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | Tbd_1669 | oligopeptide ABC transporter permease protein | chromosome | CDS | 1753335 | 1407 | - | 0.67946 |
| NA | Tbd_0952 | histidinol-phosphate aminotransferase | chromosome | CDS | 1014462 | 1155 | + | 0.687446 |
| NA | Tbd_0953 | 3-phosphoshikimate 1-carboxyvinyltransferase/prephenate dehydrogenase | chromosome | CDS | 1015613 | 867 | + | 0.712803 |
| NA | Tbd_0292 | asparagine synthase, glutamine-hydrolyzing | chromosome | CDS | 310921 | 1920 | + | 0.664583 |
| NA | Tbd_1931 | putative asparaginase | chromosome | CDS | 2026696 | 1026 | - | 0.730994 |
| NA | Tbd_0606 | ATP phosphoribosyltransferase regulatory subunit | chromosome | CDS | 633790 | 966 | + | 0.6853 |
| NA | Tbd_1849 | argininosuccinate synthase | chromosome | CDS | 1942816 | 1371 | - | 0.62655 |
| NA | Tbd_0455 | N-acetyl-gamma-glutamyl-phosphate reductase | chromosome | CDS | 472373 | 1029 | + | 0.648202 |
| NA | Tbd_1545 | 4-amino-4-deoxychorismate lyase | chromosome | CDS | 1629331 | 807 | - | 0.698885 |
| NA | Tbd_2286 | 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase | chromosome | CDS | 2359679 | 2319 | + | 0.676154 |
| NA | Tbd_1060 | hypothetical protein | chromosome | CDS | 1122646 | 378 | - | 0.616402 |
| NA | Tbd_1989 | acetohydroxy acid isomeroreductase | chromosome | CDS | 2079592 | 1017 | - | 0.642085 |
| NA | Tbd_1641 | conserved hypothetical protein | chromosome | CDS | 1724603 | 1917 | - | 0.709964 |
| NA | Tbd_1713 | histidinol dehydrogenase | chromosome | CDS | 1800556 | 1305 | - | 0.695019 |
| NA | Tbd_2223 | anthranilate phosphoribosyl transferase | chromosome | CDS | 2302760 | 1032 | - | 0.685078 |
| NA | Tbd_1920 | 3-isopropylmalate dehydrogenase | chromosome | CDS | 2016826 | 1062 | - | 0.646893 |
| NA | Tbd_1972 | transcriptional regulatory protein GntR | chromosome | CDS | 2062238 | 1413 | - | 0.647558 |
| NA | Tbd_2652 | Nitrogen regulatory protein P-II (GlnB, GlnK) | chromosome | CDS | 2725879 | 327 | - | 0.620795 |
| NA | Tbd_2284 | hypothetical protein | chromosome | CDS | 2357107 | 849 | - | 0.605418 |
| NA | Tbd_2334 | putative XAA-PRO aminopeptidase | chromosome | CDS | 2407753 | 1302 | - | 0.675883 |
| NA | Tbd_0662 | acetolactate synthase large subunit | chromosome | CDS | 702339 | 1662 | - | 0.670878 |
| NA | Tbd_1021 | selenide water dikinase | chromosome | CDS | 1088936 | 1068 | - | 0.691011 |
| NA | Tbd_1708 | imidazole glycerol phosphate synthase subunit HisF | chromosome | CDS | 1796552 | 756 | - | 0.65873 |
| NA | Tbd_0052 | glycine cleavage system transcriptional repressor | chromosome | CDS | 55109 | 540 | + | 0.664815 |
| NA | Tbd_1221 | N-succinyldiaminopimelate aminotransferase | chromosome | CDS | 1274784 | 1197 | - | 0.689223 |
| NA | Tbd_1709 | phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | chromosome | CDS | 1797312 | 756 | - | 0.660053 |
| NA | Tbd_2715 | cobalamin biosynthetic protein CobC | chromosome | CDS | 2795854 | 966 | - | 0.736025 |
| NA | Tbd_0954 | 3-phosphoshikimate 1-carboxyvinyltransferase | chromosome | CDS | 1016479 | 1287 | + | 0.6892 |
| NA | Tbd_2812 | allophanate hydrolase subunit 2 | chromosome | CDS | 2893250 | 909 | - | 0.751375 |
| NA | Tbd_0741 | histidinol-phosphate phosphatase | chromosome | CDS | 785498 | 582 | + | 0.71134 |
| NA | Tbd_0717 | diaminopimelate decarboxylase | chromosome | CDS | 756309 | 1209 | - | 0.70306 |
| NA | Tbd_2134 | branched-chain amino acid aminotransferase I | chromosome | CDS | 2220861 | 924 | + | 0.635281 |
| NA | Tbd_0045 | probable ring-cleaving dioxygenase | chromosome | CDS | 46250 | 381 | - | 0.643045 |
| NA | Tbd_0969 | aspartate kinase, monofunctional class | chromosome | CDS | 1032291 | 1230 | - | 0.630081 |
| NA | Tbd_0290 | conserved hypothetical protein | chromosome | CDS | 308204 | 1548 | + | 0.680233 |
| NA | Tbd_1711 | imidazoleglycerol-phosphate dehydratase | chromosome | CDS | 1798848 | 588 | - | 0.644558 |
| NA | Tbd_1465 | ribose-phosphate pyrophosphokinase | chromosome | CDS | 1549634 | 984 | + | 0.698171 |
| NA | Tbd_1914 | tryptophan synthase, beta chain | chromosome | CDS | 2009757 | 1200 | - | 0.666667 |
| NA | Tbd_0318 | hypothetical protein | chromosome | CDS | 342449 | 468 | + | 0.649573 |
| NA | Tbd_2503 | glutamine synthetase type I | chromosome | CDS | 2575068 | 1410 | - | 0.629078 |
| NA | Tbd_0951 | Chorismate mutase | chromosome | CDS | 1013368 | 1098 | + | 0.692168 |
| NA | Tbd_1265 | Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) | chromosome | CDS | 1326515 | 2277 | + | 0.673254 |
| NA | Tbd_0298 | amidotransferase | chromosome | CDS | 319069 | 1821 | - | 0.688083 |
| NA | Tbd_0964 | Cysteine synthase | chromosome | CDS | 1026195 | 894 | + | 0.670022 |
| NA | Tbd_1923 | putative transporter | chromosome | CDS | 2020198 | 1161 | - | 0.659776 |
| NA | Tbd_1455 | N-formylglutamate amidohydrolase | chromosome | CDS | 1538936 | 708 | + | 0.686441 |
| NA | Tbd_1850 | ornithine carbamoyltransferase | chromosome | CDS | 1944300 | 918 | - | 0.620915 |
| NA | Tbd_2224 | glutamine amidotransferase of anthranilate synthase | chromosome | CDS | 2303788 | 570 | - | 0.626316 |
| NA | Tbd_1222 | integral membrane protein, DUF6 | chromosome | CDS | 1275996 | 987 | + | 0.68693 |
| NA | Tbd_1707 | phosphoribosyl-AMP cyclohydrolase | chromosome | CDS | 1796154 | 402 | - | 0.626866 |
| NA | Tbd_0940 | hypothetical protein | chromosome | CDS | 1002404 | 576 | + | 0.581597 |
| NA | Tbd_1220 | 2,3,4,5-tetrahydropyridine-2-carboxylateN-succin yltransferase | chromosome | CDS | 1273921 | 825 | - | 0.630303 |
| NA | Tbd_0842 | probable aspartate transaminase | chromosome | CDS | 891010 | 1281 | + | 0.644809 |
| NA | Tbd_0176 | glycine dehydrogenase subunit 1 | chromosome | CDS | 188261 | 1395 | - | 0.678136 |
| NA | Tbd_2111 | conserved hypothetical protein | chromosome | CDS | 2199736 | 768 | - | 0.673177 |
| NA | Tbd_1919 | aspartate-semialdehyde dehydrogenase | chromosome | CDS | 2015571 | 1116 | - | 0.654122 |
| NA | Tbd_2442 | gamma-glutamyl phosphate reductase GPR | chromosome | CDS | 2510907 | 1281 | - | 0.686963 |
| NA | Tbd_2228 | anthranilate synthase component I | chromosome | CDS | 2307504 | 1566 | - | 0.671137 |
| NA | Tbd_1876 | acetolactate synthase | chromosome | CDS | 1972718 | 1764 | - | 0.550454 |
| NA | Tbd_2011 | HAD-superfamily hydrolase | chromosome | CDS | 2100209 | 669 | + | 0.648729 |
| NA | Tbd_0173 | glycine dehydrogenase subunit 2 | chromosome | CDS | 185810 | 1452 | - | 0.676997 |
| NA | Tbd_0387 | ribose-phosphate pyrophosphokinase | chromosome | CDS | 415528 | 951 | + | 0.639327 |
| NA | Tbd_1671 | oligopeptide ABC transporter periplasmic component | chromosome | CDS | 1755715 | 2142 | - | 0.644258 |
| NA | Tbd_1712 | histidinol-phosphate aminotransferase | chromosome | CDS | 1799486 | 1074 | - | 0.654562 |
| NA | Tbd_0315 | 3-dehydroquinate synthase | chromosome | CDS | 339421 | 1080 | + | 0.675926 |
| NA | Tbd_1164 | Cysteine desulfurase IscS | chromosome | CDS | 1217940 | 1209 | + | 0.645161 |
| NA | Tbd_0644 | alanine dehydrogenase | chromosome | CDS | 682954 | 1083 | - | 0.714681 |
| NA | Tbd_2686 | acetylglutamate kinase | chromosome | CDS | 2765052 | 882 | - | 0.639456 |
| NA | Tbd_1729 | conserved hypothetical protein | chromosome | CDS | 1813832 | 765 | + | 0.67451 |
| NA | Tbd_1718 | putative membrane protein | chromosome | CDS | 1804287 | 1218 | + | 0.637931 |
| NA | Tbd_0303 | hypothetical protein | chromosome | CDS | 325204 | 864 | + | 0.681713 |
| NA | Tbd_0883 | probable membrane protein | chromosome | CDS | 932988 | 867 | + | 0.701269 |
| NA | Tbd_0212 | probable sodium/solute symporter | chromosome | CDS | 232336 | 1428 | - | 0.656162 |
| NA | Tbd_1446 | DNA polymerase X | chromosome | CDS | 1531277 | 1725 | + | 0.689855 |
| NA | Tbd_0899 | peptidase M, neutral zinc metallopeptidases, zinc-binding site | chromosome | CDS | 948937 | 2778 | - | 0.683225 |
| NA | Tbd_2106 | lysine decarboxylase | chromosome | CDS | 2194463 | 2244 | - | 0.634135 |
| NA | Tbd_1851 | acetylornithine and succinylornithine aminotransferase | chromosome | CDS | 1945217 | 1185 | - | 0.675949 |
| NA | Tbd_2149 | putative lipase | chromosome | CDS | 2236461 | 612 | + | 0.689542 |
| NA | Tbd_0988 | transport system ATPase | chromosome | CDS | 1053529 | 1068 | - | 0.67603 |
| NA | Tbd_0843 | homoserine dehydrogenase | chromosome | CDS | 892316 | 1314 | + | 0.665906 |
| NA | Tbd_2119 | aspartate ammonia-lyase | chromosome | CDS | 2206976 | 1401 | + | 0.669522 |
| NA | Tbd_0069 | arginase | chromosome | CDS | 71231 | 906 | - | 0.728477 |
| NA | Tbd_0721 | conserved hypothetical protein | chromosome | CDS | 762443 | 1209 | - | 0.688999 |
| NA | Tbd_2730 | dihydroxy-acid dehydratase | chromosome | CDS | 2808898 | 2778 | - | 0.680706 |
| NA | Tbd_2725 | sodium:alanine symporter | chromosome | CDS | 2803248 | 1509 | - | 0.647449 |
| NA | Tbd_0580 | leucyl aminopeptidase | chromosome | CDS | 609534 | 1512 | - | 0.654762 |
| NA | Tbd_0950 | D-isomer specific 2-hydroxyacid dehydrogenase | chromosome | CDS | 1012196 | 1176 | + | 0.67432 |
| NA | Tbd_1578 | probable MFS transporter | chromosome | CDS | 1661874 | 1590 | + | 0.720755 |
| NA | Tbd_0270 | anthranilate phosphoribosyltransferase-like protein | chromosome | CDS | 290564 | 1116 | + | 0.696237 |
| NA | Tbd_1921 | 3-isopropylmalate dehydratase small subunit | chromosome | CDS | 2017942 | 639 | - | 0.666667 |
| NA | Tbd_1990 | acetolactate synthase, small subunit | chromosome | CDS | 2080648 | 498 | - | 0.624498 |
| NA | Tbd_1546 | anthranilate synthase | chromosome | CDS | 1630134 | 1329 | - | 0.681716 |
| NA | Tbd_1710 | imidazole glycerol phosphate synthase, glutamine amidotransferase subunit HisH | chromosome | CDS | 1798103 | 687 | - | 0.659389 |
| NA | Tbd_1162 | serine O-acetyltransferase | chromosome | CDS | 1216621 | 759 | + | 0.652174 |
| NA | Tbd_1127 | Carbamoyl-phosphate synthase, small subunit | chromosome | CDS | 1181211 | 1140 | + | 0.666667 |
| NA | Tbd_2222 | indole-3-glycerol phosphate synthase | chromosome | CDS | 2301966 | 789 | - | 0.676806 |
| NA | Tbd_1991 | acetolactate synthase, large subunit | chromosome | CDS | 2081145 | 1842 | - | 0.624321 |
| NA | Tbd_2608 | hypothetical protein | chromosome | CDS | 2682152 | 474 | - | 0.71308 |
| NA | Tbd_0207 | shikimate kinase I | chromosome | CDS | 225625 | 552 | + | 0.653986 |
| NA | Tbd_1223 | hypothetical protein | chromosome | CDS | 1276975 | 384 | + | 0.708333 |
| NA | Tbd_0029 | glutamate N-acetyltransferase ArgJ | chromosome | CDS | 29347 | 1224 | - | 0.686275 |
| NA | Tbd_1985 | integral membrane protein, DUF6 | chromosome | CDS | 2075046 | 927 | - | 0.6548 |
| NA | Tbd_1885 | 3-dehydroquinate synthase | chromosome | CDS | 1984095 | 1092 | - | 0.554945 |
| NA | Tbd_2737 | conserved hypothetical protein | chromosome | CDS | 2818158 | 1308 | - | 0.673547 |
| NA | Tbd_1280 | conserved hypothetical protein | chromosome | CDS | 1346220 | 1236 | + | 0.701456 |
| NA | Tbd_2346 | histidinol-phosphate phosphatase | chromosome | CDS | 2419510 | 543 | - | 0.662983 |
| NA | Tbd_1913 | tryptophan synthase, alpha chain | chromosome | CDS | 2008892 | 822 | - | 0.658151 |
| NA | Tbd_2165 | glycine/serine hydroxymethyltransferase 1 | chromosome | CDS | 2250172 | 1245 | + | 0.64739 |
| NA | Tbd_2433 | oligopeptidase A | chromosome | CDS | 2502986 | 2106 | + | 0.660494 |
| NA | Tbd_1670 | oligopeptide ABC transporter permease protein | chromosome | CDS | 1754738 | 978 | - | 0.619632 |
| NA | Tbd_0674 | major facilitator superfamily protein | chromosome | CDS | 714616 | 1185 | - | 0.678481 |
| NA | Tbd_0656 | leucyl aminopeptidase | chromosome | CDS | 696819 | 1461 | + | 0.673511 |
| NA | Tbd_0888 | conserved hypothetical protein | chromosome | CDS | 937062 | 390 | + | 0.630769 |
| NA | Tbd_1915 | N-(5'phosphoribosyl)anthranilate isomerase | chromosome | CDS | 2010953 | 618 | - | 0.66343 |
| NA | Tbd_1569 | aspartate aminotransferase | chromosome | CDS | 1652969 | 1197 | + | 0.668338 |
| NA | Tbd_0065 | membrane protein, putative | chromosome | CDS | 68396 | 891 | - | 0.710438 |
| NA | Tbd_1866 | putative D-amino acid oxidase | chromosome | CDS | 1961595 | 1107 | + | 0.692864 |
| NA | Tbd_2767 | glutamate synthase large subunit | chromosome | CDS | 2845299 | 4485 | + | 0.666667 |
| NA | Tbd_1986 | 2-isopropylmalate synthase | chromosome | CDS | 2076228 | 1536 | - | 0.655599 |
| NA | Tbd_2809 | hypothetical protein | chromosome | CDS | 2889949 | 657 | + | 0.555556 |
| NA | Tbd_0267 | D-alanine transminase | chromosome | CDS | 288750 | 849 | + | 0.671378 |
| NA | Tbd_1890 | ATP phosphoribosyltransferase | chromosome | CDS | 1989442 | 651 | - | 0.666667 |
| NA | Tbd_0240 | Nitrogen regulatory protein P-II (GlnB, GlnK) | chromosome | CDS | 263550 | 339 | + | 0.625369 |
| NA | Tbd_0229 | argininosuccinate lyase | chromosome | CDS | 250631 | 1392 | - | 0.673851 |
| NA | Tbd_0154 | amino-acid N-acetyltransferase (ArgA) | chromosome | CDS | 165928 | 1329 | - | 0.670429 |
| NA | Tbd_0542 | hypothetical protein | chromosome | CDS | 567554 | 711 | - | 0.613221 |
| NA | Tbd_2504 | shikimate 5-dehydrogenase | chromosome | CDS | 2576774 | 798 | + | 0.709273 |
| NA | Tbd_1271 | succinyl-diaminopimelate desuccinylase | chromosome | CDS | 1336981 | 1179 | - | 0.659033 |
| NA | Tbd_0253 | putative transport transmembrane protein | chromosome | CDS | 274448 | 1389 | - | 0.680346 |
| NA | Tbd_0979 | hypothetical protein | chromosome | CDS | 1043251 | 405 | - | 0.681481 |
| NA | Tbd_2517 | 5,10-methylenetetrahydrofolate reductase (FADH) | chromosome | CDS | 2588929 | 831 | - | 0.642599 |
| NA | Tbd_0177 | glycine cleavage system H-protein | chromosome | CDS | 189772 | 390 | - | 0.65641 |
| NA | Tbd_1098 | dihydrodipicolinate synthase | chromosome | CDS | 1157283 | 891 | + | 0.659933 |
| NA | Tbd_1922 | 3-isopropylmalate dehydratase large subunit | chromosome | CDS | 2018730 | 1404 | - | 0.691595 |
| NA | Tbd_2417 | delta 1-pyrroline-5-carboxylate reductase | chromosome | CDS | 2488480 | 816 | - | 0.719363 |
| NA | Tbd_2363 | threonine dehydratase I | chromosome | CDS | 2438064 | 1518 | - | 0.656126 |
| NA | Tbd_0060 | asparagine synthase, glutamine-hydrolyzing | chromosome | CDS | 63763 | 1767 | + | 0.672892 |
| NA | Tbd_2526 | diaminopimelate epimerase | chromosome | CDS | 2596874 | 867 | + | 0.688581 |
| NA | Tbd_0178 | glycine cleavage system T protein | chromosome | CDS | 190335 | 1089 | - | 0.644628 |
| NA | Tbd_1128 | Carbamoyl-phosphate synthase, large subunit, glutamine-dependent | chromosome | CDS | 1182353 | 3207 | + | 0.650764 |
| NA | Tbd_2509 | alanine-glyoxylate transaminase | chromosome | CDS | 2582510 | 1134 | + | 0.657848 |
| NA | Tbd_1524 | major facilitator family transporter (permease) | chromosome | CDS | 1611291 | 1305 | - | 0.706513 |
| NA | Tbd_0437 | MFS family transporter | chromosome | CDS | 457551 | 1362 | + | 0.660793 |
| NA | Tbd_0048 | conserved hypothetical protein | chromosome | CDS | 49133 | 1335 | - | 0.71161 |
| NA | Tbd_0844 | threonine synthase | chromosome | CDS | 893626 | 1443 | + | 0.652114 |
| NA | Tbd_0768 | probable aminotransferase | chromosome | CDS | 811618 | 1170 | - | 0.705128 |
| NA | Tbd_0226 | diaminopimelate decarboxylase | chromosome | CDS | 248334 | 1245 | - | 0.664257 |
| NA | Tbd_2343 | lactoylglutathione lyase | chromosome | CDS | 2417595 | 414 | - | 0.669082 |
| NA | Tbd_1962 | hypothetical protein | chromosome | CDS | 2055122 | 279 | - | 0.666667 |
| NA | Tbd_1125 | dihydrodipicolinate reductase | chromosome | CDS | 1179970 | 804 | + | 0.715174 |
| NA | Tbd_2813 | Conserved hypothetical protein | chromosome | CDS | 2894155 | 774 | - | 0.70801 |
| NA | Tbd_1120 | glutamate 5-kinase, ProB-related | chromosome | CDS | 1175856 | 1125 | + | 0.700444 |
| NA | Tbd_1706 | phosphoribosyl-ATP pyrophosphohydrolase | chromosome | CDS | 1795831 | 327 | - | 0.629969 |
| NA | Tbd_0183 | 3-dehydroquinate dehydratase | chromosome | CDS | 195705 | 519 | - | 0.618497 |
| NA | Tbd_1907 | O-succinylhomoserine sulfhydrylase | chromosome | CDS | 2002799 | 1170 | - | 0.673504 |
| NA | Tbd_2000 | hypothetical protein | chromosome | CDS | 2089032 | 636 | + | 0.522013 |
| NA | Tbd_1339 | putative mercuric transport protein | chromosome | CDS | 1421743 | 354 | + | 0.663842 |
| NA | Tbd_0719 | transport protein | chromosome | CDS | 759364 | 1164 | - | 0.72079 |
| NA | Tbd_0686 | acyl-CoA thioesterase I precursor | chromosome | CDS | 727386 | 621 | + | 0.692432 |
| NA | Tbd_0808 | Nitrogen regulatory protein P-II (GlnB, GlnK) | chromosome | CDS | 850433 | 339 | + | 0.631268 |
| NA | Tbd_1235 | conserved hypothetical protein | chromosome | CDS | 1295641 | 1515 | - | 0.678548 |
| NA | Tbd_1685 | hypothetical protein | chromosome | CDS | 1771430 | 1998 | - | 0.638639 |
| NA | Tbd_0949 | phosphoserine aminotransferase | chromosome | CDS | 1011124 | 1080 | + | 0.64537 |
| NA | Tbd_1667 | hypothetical protein | chromosome | CDS | 1751146 | 192 | - | 0.625 |
| NA | Tbd_1410 | gamma-glutamyltranspeptidase | chromosome | CDS | 1494890 | 1806 | + | 0.706534 |
| NA | Tbd_0234 | 5-methyltetrahydrofolate--homocysteinemethyltran sferase | chromosome | CDS | 255446 | 3714 | - | 0.652396 |
| NA | Tbd_1130 | conserved hypothetical protein | chromosome | CDS | 1186062 | 459 | + | 0.657952 |
| NA | Tbd_0514 | 3-deoxy-7-phosphoheptulonate synthase | chromosome | CDS | 543458 | 1077 | + | 0.667595 |
| NA | Tbd_2733 | MFS permease | chromosome | CDS | 2814863 | 1263 | - | 0.711006 |
| NA | Tbd_2768 | glutamate synthase, small subunit | chromosome | CDS | 2849783 | 1446 | + | 0.679115 |
| NA | Tbd_0246 | homoserine O-succinyltransferase | chromosome | CDS | 268846 | 1050 | + | 0.67619 |
| NA | Tbd_0666 | Chorismate synthase | chromosome | CDS | 706654 | 1101 | + | 0.681199 |
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