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2024-05-05 14:15:50

Gene list

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COG category: Amino acid transport and metabolism
Organism: Fusobacterium nucleatum subsp. nucleatum ATCC 25586, ATCC 25586

Number of genes found: 189

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Fusobacterium nucleatum subsp. nucleatum ATCC 25586, ATCC 25586
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
FN0044 Shikimate 5-dehydrogenasechromosome CDS682841 261 + 0.252874
FN0045 Shikimate 5-dehydrogenasechromosome CDS683152 750 + 0.253333
FN0046 3-dehydroquinate dehydratasechromosome CDS683882 444 + 0.279279
FN0053 Branched-chain amino acid transport system carrier proteinchromosome CDS689480 1275 + 0.291765
FN0058 Cysteine desulfhydrasechromosome CDS694047 1194 + 0.303183
FN0061 Thermostable carboxypeptidase 1chromosome CDS697159 1491 + 0.268276
FN0074 Ethanolamine utilization protein eutSchromosome CDS713468 369 + 0.311653
FN0075 Ethanolamine utilization protein eutPchromosome CDS713839 438 + 0.292237
FN0078 Ethanolamine utilization protein eutAchromosome CDS716345 1431 + 0.307477
FN0079 Ethanolamine ammonia-lyase heavy chainchromosome CDS717802 1368 + 0.340643
FN0080 Ethanolamine ammonia-lyase light chainchromosome CDS719181 888 + 0.317568
FN0081 Ethanolamine utilization protein eutLchromosome CDS720175 654 + 0.366972
FN0085 Ethanolamine utilization cobalamin adenosyltransferasechromosome CDS723410 768 + 0.240885
FN0089 Ethanolamine permeasechromosome CDS725362 1083 + 0.342567
FN0090 Ethanolamine utilization protein eutQchromosome CDS726455 450 + 0.295556
FN0091 Phosphoserine phosphatasechromosome CDS726928 1101 + 0.273388
FN0107 Sodium/proline symporterchromosome CDS741852 1449 + 0.298827
FN0163 5-methyltetrahydrofolate--homocysteinemethyltran sferasechromosome CDS791458 930 + 0.292473
FN0192 Dipeptide-binding proteinchromosome CDS817482 1548 + 0.294574
FN0193 Dipeptide transport system permease protein dppBchromosome CDS819026 957 + 0.263323
FN0194 Dipeptide transport system permease protein dppCchromosome CDS819979 825 + 0.292121
FN0205 Sodium/glutamate symport carrier proteinchromosome CDS831609 1260 + 0.321429
FN0207 (R)-2-hydroxyglutaryl-CoA dehydratase alpha-subunitchromosome CDS833758 1329 + 0.336343
FN0208 (R)-2-hydroxyglutaryl-CoA dehydratase beta-subunitchromosome CDS835108 1149 + 0.300261
FN0225 Gluconate permeasechromosome CDS851805 1359 - 0.304636
FN0278 Xaa-His dipeptidasechromosome CDS904396 1359 - 0.302428
FN0317 Tryptophan synthase beta chainchromosome CDS953909 1188 - 0.318182
FN0328 Na(+)-linked D-alanine glycine permeasechromosome CDS962425 1437 - 0.292971
FN0334 Aspartate/aromatic aminotransferasechromosome CDS967909 1248 - 0.266827
FN0354 Hypothetical membrane-spanning proteinchromosome CDS985432 675 + 0.268148
FN0356 Lactoylglutathione lyasechromosome CDS987571 372 - 0.27957
FN0371 Hypothetical proteinchromosome CDS1000133 768 + 0.233073
FN0376 Iron(III)-transport ATP-binding protein sfuCchromosome CDS1006505 1116 + 0.278674
FN0395 Transporterchromosome CDS1033246 861 + 0.267131
FN0396 Dipeptide-binding proteinchromosome CDS1034343 1536 + 0.311198
FN0397 Dipeptide transport system permease protein dppBchromosome CDS1035962 927 + 0.329018
FN0398 Dipeptide transport system permease protein dppCchromosome CDS1036898 870 + 0.321839
FN0399 Dipeptide transport ATP-binding protein dppDchromosome CDS1037786 1008 + 0.320437
FN0400 Dipeptide transport ATP-binding protein dppFchromosome CDS1038798 963 + 0.298027
FN0421 Carbamoyl-phosphate synthase small chainchromosome CDS1062076 1077 + 0.324048
FN0422 Carbamoyl-phosphate synthase large chainchromosome CDS1063152 3192 + 0.302632
FN0428 Histidinol-phosphatasechromosome CDS1070177 777 + 0.207207
FN0436 regulator of kinase autophosphorylation inhibitorchromosome CDS1077941 1011 - 0.272997
FN0437 kinase autophosphorylation inhibitor KipIchromosome CDS1078944 789 - 0.282636
FN0444 Phosphoadenosine phosphosulfate reductasechromosome CDS1083214 1725 + 0.274203
FN0447 NIFS proteinchromosome CDS1089483 1152 + 0.263021
FN0453 Xaa-Pro aminopeptidasechromosome CDS1097687 1755 + 0.25641
FN0488 NAD-specific glutamate dehydrogenasechromosome CDS1133197 1320 + 0.330303
FN0501 Ornithine decarboxylasechromosome CDS1149677 2352 - 0.309099
FN0504 Arginine permeasechromosome CDS1153738 1362 - 0.297357
FN0552 Serine racemasechromosome CDS1203696 1110 - 0.27027
FN0553 D-serine dehydratasechromosome CDS1204825 1326 - 0.28733
FN0554 D-serine permeasechromosome CDS1206184 1350 - 0.32
FN0605 Aspartate aminotransferasechromosome CDS1259946 1212 + 0.279703
FN0618 Spermidine/putrescine-binding proteinchromosome CDS1277801 1029 - 0.269193
FN0625 Aspartate aminotransferasechromosome CDS1284409 1197 - 0.24812
FN0662 Formiminoglutamasechromosome CDS1318292 957 + 0.286311
FN0674 Transporterchromosome CDS1329613 849 + 0.234393
FN0733 Peptidase Tchromosome CDS1389704 1239 + 0.292171
FN0739 Formiminotetrahydrofolate cyclodeaminasechromosome CDS1397107 639 - 0.305164
FN0741 Glutamate formiminotransferasechromosome CDS1399081 966 - 0.31677
FN0751 L-asparaginase Ichromosome CDS1409811 1011 - 0.265084
FN0763 Transporter, LysE familychromosome CDS1420309 192 + 0.359375
FN0775 Aspartyl aminopeptidasechromosome CDS1430708 1290 + 0.275194
FN0776 Aspartate-ammonia ligasechromosome CDS1432084 984 + 0.280488
FN0791 Histidine ammonia-lyasechromosome CDS1446836 1551 + 0.308833
FN0792 Urocanate hydratasechromosome CDS1448403 2022 + 0.328388
FN0793 Sodium/glutamate symport carrier proteinchromosome CDS1450652 1200 + 0.308333
FN0800 Amino acid-binding proteinchromosome CDS1460037 693 - 0.272727
FN0801 Amino acid transport ATP-binding proteinchromosome CDS1460795 729 - 0.272977
FN0802 Amino acid transport system permease proteinchromosome CDS1461516 711 - 0.288326
FN0810 Low-specificity threonine aldolasechromosome CDS1469178 1023 + 0.26393
FN0815 Propionate permeasechromosome CDS1474530 1344 + 0.316964
FN0822 Shikimate kinasechromosome CDS1481968 519 + 0.238921
FN0859 Hypothetical proteinchromosome CDS1520810 510 - 0.24902
FN0876 Gamma-glutamyltranspeptidasechromosome CDS1535884 1713 - 0.295388
FN0877 Sodium/proline symporterchromosome CDS1537593 1371 - 0.307805
FN0887 Oligoendopeptidase Fchromosome CDS1547999 1803 - 0.261231
FN0892 Phosphoserine phosphatasechromosome CDS1553186 744 + 0.254032
FN0933 3-phosphoshikimate 1-carboxyvinyltransferasechromosome CDS1585322 1275 + 0.236863
FN0934 Chorismate synthasechromosome CDS1586580 1074 + 0.269088
FN0941 Gamma-glutamyltranspeptidasechromosome CDS1593617 1740 - 0.321839
FN0973 Histidinol-phosphate aminotransferasechromosome CDS1625716 1074 - 0.238361
FN0974 Lactoylglutathione lyasechromosome CDS1626806 429 - 0.284382
FN0995 Hypothetical proteinchromosome CDS1650106 627 + 0.264753
FN0998 Dipeptide-binding proteinchromosome CDS1652387 1503 + 0.28676
FN1038 Transporterchromosome CDS1690215 912 + 0.269737
FN1039 Branched-chain amino acid transport protein azlCchromosome CDS1691137 753 + 0.245684
FN1040 Branched-chain amino acid transport protein azlDchromosome CDS1691886 324 + 0.25
FN1047 Hypothetical membrane-spanning proteinchromosome CDS1697315 717 + 0.191074
FN1050 Lactoylglutathione lyasechromosome CDS1699517 384 + 0.255208
FN1055 Cysteine synthasechromosome CDS1702580 1011 - 0.285856
FN1059 Branched chain amino acid transport system II carrier proteinchromosome CDS1705803 1278 + 0.266823
FN1061 unknownchromosome CDS1707906 555 - 0.223423
FN1064 Hypothetical proteinchromosome CDS1710668 762 + 0.328084
FN1106 L-serine dehydratasechromosome CDS1750707 1227 + 0.331703
FN1109 Dipeptide transport ATP-binding protein dppFchromosome CDS1753084 762 - 0.251969
FN1110 Dipeptide transport ATP-binding protein dppDchromosome CDS1753863 780 - 0.266667
FN1111 Dipeptide-binding proteinchromosome CDS1754655 1617 - 0.301175
FN1112 Dipeptide transport system permease protein dppCchromosome CDS1756255 813 - 0.264453
FN1113 Dipeptide transport system permease protein dppBchromosome CDS1757067 939 - 0.27263
FN1116 Peptidase Echromosome CDS1759661 612 + 0.238562
FN1128 Acylamino-acid-releasing enzymechromosome CDS1772243 1983 - 0.257186
FN1145 Oligoendopeptidase Fchromosome CDS1794342 1680 - 0.256548
FN1152 Aspartate aminotransferasechromosome CDS1806757 1191 + 0.293871
FN1168 Macrolide-efflux proteinchromosome CDS1826741 909 - 0.207921
FN1187 Amino acid-binding proteinchromosome CDS1850022 720 + 0.276389
FN1220 Cysteine synthasechromosome CDS1879402 951 + 0.304942
FN1236 Choline transport proteinchromosome CDS1892602 969 - 0.23323
FN1239 Hypothetical proteinchromosome CDS1896493 645 - 0.203101
FN1277 Aminoacyl-histidine dipeptidasechromosome CDS1935384 1461 - 0.265572
FN1313 Oligopeptide-binding protein oppAchromosome CDS1967193 1425 + 0.244211
FN1350 Integral membrane proteinchromosome CDS2002449 438 - 0.294521
FN1359 Dipeptide-binding proteinchromosome CDS2010777 1488 + 0.27957
FN1360 Dipeptide transport system permease protein dppBchromosome CDS2012274 918 + 0.259259
FN1361 Dipeptide transport system permease protein dppCchromosome CDS2013191 768 + 0.255208
FN1363 Dipeptide transport ATP-binding protein dppFchromosome CDS2014641 753 + 0.277556
FN1397 Glutaminasechromosome CDS2051976 915 + 0.297268
FN1398 Amino acid carrier protein alsTchromosome CDS2052948 1413 + 0.326256
FN1401 Urocanate hydratasechromosome CDS2058732 1755 + 0.340171
FN1405 Formiminotetrahydrofolate cyclodeaminasechromosome CDS2064427 570 + 0.27193
FN1406 Histidine ammonia-lyasechromosome CDS2065017 1536 + 0.307943
FN1407 Glutamate formiminotransferasechromosome CDS2066570 882 + 0.28458
FN1408 Aminoacyl-histidine dipeptidasechromosome CDS2067535 1470 + 0.282313
FN1411 Threonine dehydratasechromosome CDS2070870 1215 + 0.295473
FN1416 Transcriptional regulator, GntR familychromosome CDS2077033 1371 + 0.224654
FN1418 Transcriptional regulator, GntR familychromosome CDS2079163 1428 - 0.254902
FN1419 Methionine gamma-lyasechromosome CDS2080705 1188 + 0.314815
FN1428 Branched-chain amino acid transport ATP-binding protein livFchromosome CDS2096950 714 - 0.30112
FN1429 Branched-chain amino acid transport ATP-binding protein livGchromosome CDS2097663 783 - 0.292465
FN1430 Branched-chain amino acid transport system permease protein livMchromosome CDS2098435 858 - 0.293706
FN1431 Branched-chain amino acid transport system permease protein livHchromosome CDS2099416 927 - 0.300971
FN1432 Leucine-, isoleucine-, valine-, threonine-, and alanine-binding proteinchromosome CDS2100519 1152 - 0.305556
FN1462 Transcriptional regulator, GntR familychromosome CDS2143626 1410 - 0.244681
FN1465 Permeasechromosome CDS2148126 876 + 0.200913
FN1475 N-acetylneuraminate lyasechromosome CDS2157925 873 + 0.269187
FN1477 Hypothetical membrane-spanning proteinchromosome CDS2159644 714 + 0.239496
FN1497 Multidrug resistance protein 2chromosome CDS1104 1125 - 0.243556
FN1498 Integral membrane proteinchromosome CDS2703 900 + 0.284444
FN1500 Nickel transport ATP-binding protein nikEchromosome CDS5283 735 - 0.251701
FN1501 Nickel transport ATP-binding protein nikDchromosome CDS6018 783 - 0.243934
FN1502 Nickel transport system permease protein nikCchromosome CDS6797 816 - 0.279412
FN1503 Nickel transport system permease protein nikBchromosome CDS7593 939 - 0.260916
FN1504 Nickel-binding proteinchromosome CDS8537 1569 - 0.285532
FN1521 Dipeptide transport system permease protein dppBchromosome CDS26528 939 + 0.307774
FN1522 Dipeptide transport system permease protein dppCchromosome CDS27467 831 + 0.310469
FN1523 Dipeptide-binding proteinchromosome CDS28347 1581 + 0.30993
FN1524 Dipeptide transport ATP-binding protein dppDchromosome CDS29939 786 + 0.316794
FN1525 Dipeptide transport ATP-binding protein dppFchromosome CDS30663 1029 + 0.298348
FN1562 Phospho-2-dehydro-3-deoxyheptonate aldolasechromosome CDS83850 1005 - 0.286567
FN1648 Oligopeptide transport ATP-binding protein oppFchromosome CDS142637 771 - 0.241245
FN1649 Oligopeptide transport ATP-binding protein oppDchromosome CDS143417 789 - 0.243346
FN1650 Oligopeptide transport system permease protein oppCchromosome CDS144208 717 - 0.263598
FN1651 Oligopeptide transport system permease protein oppBchromosome CDS144966 924 - 0.252165
FN1652 Oligopeptide-binding protein oppAchromosome CDS146131 1500 - 0.282
FN1669 Choline transport proteinchromosome CDS165650 927 - 0.24164
FN1691 Hypothetical membrane-spanning proteinchromosome CDS186722 1149 - 0.201915
FN1729 4-amino-4-deoxychorismate lyasechromosome CDS228428 750 - 0.232
FN1730 Para-aminobenzoate synthase component Ichromosome CDS229171 1362 - 0.251101
FN1731 Anthranilate synthase component IIchromosome CDS230516 612 - 0.272876
FN1732 Hypothetical proteinchromosome CDS231371 798 - 0.255639
FN1744 Transporterchromosome CDS242129 882 - 0.263039
FN1745 Cystathionine gamma-synthasechromosome CDS243043 1191 - 0.308984
FN1746 Cystathionine beta-lyasechromosome CDS244481 1260 + 0.286508
FN1747 Cysteine permeasechromosome CDS245787 1536 + 0.325521
FN1783 Ethanolamine utilization protein eutJchromosome CDS264766 825 + 0.309091
FN1797 Spermidine/putrescine transport ATP-binding protein potAchromosome CDS278961 1131 + 0.290893
FN1798 Spermidine/putrescine transport system permease protein potBchromosome CDS280078 855 + 0.261988
FN1799 Spermidine/putrescine transport system permease protein potCchromosome CDS280916 795 + 0.269182
FN1801 Sodium/glutamate symport carrier proteinchromosome CDS282726 1242 - 0.305958
FN1804 Aminoacyl-histidine dipeptidasechromosome CDS285065 1461 + 0.288843
FN1806 Integral membrane proteinchromosome CDS287864 864 + 0.280093
FN1854 Methylaspartate mutasechromosome CDS342685 1389 + 0.287257
FN1855 Methylaspartate mutasechromosome CDS344089 1458 + 0.262689
FN1866 Lysine 2,3-aminomutasechromosome CDS357253 1278 - 0.327856
FN1892 unknownchromosome CDS377788 183 + 0.284153
FN1906 Cytosol aminopeptidasechromosome CDS398507 1437 + 0.290884
FN1943 Tryptophanasechromosome CDS444991 1638 + 0.334554
FN1949 Xaa-Pro dipeptidasechromosome CDS453624 1389 - 0.271418
FN1952 Na(+)-linked D-alanine glycine permeasechromosome CDS459033 108 - 0.277778
FN1953 Na(+)-linked D-alanine glycine permeasechromosome CDS459287 303 - 0.287129
FN1955 unknownchromosome CDS460076 195 + 0.194872
FN1988 Tyrosine phenol-lyasechromosome CDS491058 1383 + 0.313087
FN1992 Ribose-phosphate pyrophosphokinasechromosome CDS496105 951 + 0.299685
FN2008 Glycine betaine transport ATP-binding proteinchromosome CDS507687 723 - 0.266943
FN2066 Phage-related proteinchromosome CDS576417 417 + 0.280576
FN2069 Amino acid carrier protein alsTchromosome CDS579112 1356 - 0.306785
FN2101 Transporterchromosome CDS610386 906 + 0.281457
FN2104 tricarboxylate transport membrane protein TctBchromosome CDS614377 444 + 0.238739