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2024-05-03 08:35:57

Gene list

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COG category: Amino acid transport and metabolism
Organism: Streptococcus pneumoniae R6, R6

Number of genes found: 183

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Streptococcus pneumoniae R6, R6
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
ABC-MSP ABC transporter membrane-spanning permease-macrolide effluxchromosome CDS1002215 1179 + 0.373198
ABC-MSP ABC transporter membrane-spanning permease-aspartate/glutamate transportchromosome CDS1304208 801 - 0.443196
ABC-NBD ABC transporter ATP-binding protein-iron transportchromosome CDS214896 1092 - 0.407509
ABC-NBD ABC transporter ATP-binding protein-unknown substratechromosome CDS1615977 1011 - 0.330366
ABC-NDB ABC transporter ATP-binding protein-aspartate/glutamate transportchromosome CDS1303465 744 - 0.420699
ABC-SBP ABC transporter solute-binding protein-amino acid transportchromosome CDS108506 798 + 0.397243
ABC-SBP ABC transporter substrate-binding protein-glutamine transport/Major cell binding factor precursorchromosome CDS546440 816 - 0.417892
ABC-SBP ABC transporter substrate-binding protein-amino acid transportchromosome CDS154470 831 + 0.407942
ABC-SBP-truncation ABC transporter substrate-binding protein-unknown substrate, truncationchromosome CDS629408 549 - 0.398907
ABC-SBP-truncation ABC transporter substrate-binding protein-unknown substrate, truncationchromosome CDS630031 243 - 0.423868
MFS transporter Major facilitator superfamily transporter-efflux?chromosome CDS1435804 1152 - 0.430556
adh Putative alcohol dehydrogenasechromosome CDS1836091 1059 - 0.409821
adhB Alcohol dehydrogenasechromosome CDS1642986 1038 - 0.447977
ald-truncation Alanine dehydrogenase, truncationchromosome CDS848313 264 - 0.439394
ald-truncation Alanine dehydrogenase, truncationchromosome CDS848727 426 - 0.446009
ald-truncation Alanine dehydrogenase, truncationchromosome CDS848041 276 - 0.463768
aliA ABC transporter substrate-binding protein-oligopeptide transportchromosome CDS325111 1983 + 0.397882
aliB ABC transporter substrate-binding protein-oligopeptide transportchromosome CDS1363510 1959 - 0.38438
amiA ABC transporter substrate-binding protein-oligopeptide transportchromosome CDS1676994 1980 - 0.390404
amiC ABC transporter membrane-spanning permease-oligopeptide transportchromosome CDS1675431 1497 - 0.392786
amiD ABC transporter membrane-spanning permease-oligopeptide transportchromosome CDS1674505 927 - 0.399137
amiE ABC transporter ATP-binding protein-oligopeptide transportchromosome CDS1673429 1068 - 0.425094
amiF ABC transporter ATP-binding protein-oligopeptide transportchromosome CDS1672492 972 - 0.411523
ansB L-asparaginase (L-asparagine amidohydrolase)chromosome CDS1782113 963 + 0.457944
appA ABC transporter substrate-binding protein-oligopeptide transportchromosome CDS1190838 1629 - 0.305709
appB ABC transporter membrane-spanning permease-oligopeptide transportchromosome CDS1189778 996 - 0.327309
appC ABC transporter membrane-spanning permease-oligopeptide transportchromosome CDS1188910 852 - 0.366197
arcA-truncation Arginine deiminase, truncationchromosome CDS1942262 450 + 0.431111
arcA-truncation Arginine deiminase, truncationchromosome CDS1941478 744 + 0.422043
arcB Ornithine transcarbamoylasechromosome CDS1942769 1017 + 0.422812
arcC Carbamate kinasechromosome CDS1943950 948 + 0.416667
argG Argininosuccinate synthasechromosome CDS109269 1248 + 0.415064
argH Arginine succinate lyasechromosome CDS110545 1392 + 0.409483
aroA 3-Enolpyruvylshikimate-5-phosphate synthetasechromosome CDS1226334 1296 - 0.448302
aroB 3-dehydroquinate synthasechromosome CDS1230347 1068 - 0.449438
aroC Chorismate synthasechromosome CDS1229171 1167 - 0.468723
aroD 3-dehydroquinate dehydratasechromosome CDS1232277 678 - 0.441003
aroE Shikimate dehydrogenasechromosome CDS1231433 855 - 0.436257
aroF Phospho-2-dehydro-3-deoxyheptonate aldolase (DAHP synthatase); possibly tyr-sensitivechromosome CDS1524246 1032 - 0.44186
aroG phospho-2-dehydro-3-deoxyheptonate aldolase (DAHP synthatase isozyme)-possibly phe sensitivechromosome CDS1525279 1032 - 0.409884
aroK Shikimate kinasechromosome CDS1225865 477 - 0.425577
asd Aspartate beta-semialdehyde dehydrogenasechromosome CDS905279 1077 + 0.414113
asnA Aspartate--ammonia ligase (asparagine synthetase A)chromosome CDS1758618 999 - 0.433433
aspB Aspartate aminotransferasechromosome CDS1377486 1188 - 0.467172
aspC Aspartate aminotransferasechromosome CDS35811 1170 + 0.459829
aspC Potential aminotransferasechromosome CDS1778347 1215 - 0.446091
brnQ Branched-chain amino acid transport system carrier proteinchromosome CDS550668 1341 + 0.421327
cad Lysine decarboxylasechromosome CDS818663 1476 + 0.438347
carA Carbamoylphosphate synthase (glutamine-hydrolysing) light subunitchromosome CDS1158238 1080 - 0.439815
carB Carbamoylphosphate synthase (ammonia), heavy subunitchromosome CDS1154749 3177 - 0.44413
cbpG-truncation Choline binding protein G, truncationchromosome CDS350465 657 + 0.336377
cycK Cysteine synthase, O-acetylserine sulfhydrylasechromosome CDS2008230 921 + 0.411509
cysE Serine acetyltransferasechromosome CDS518039 618 + 0.488673
dagA D-alanine glycine permeasechromosome CDS369089 1323 + 0.454271
dapA Dihydrodipicolinate synthasechromosome CDS906411 936 + 0.429487
dapB Dihydrodipicolinate reductasechromosome CDS1401137 768 - 0.458333
dapD 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase-related proteinchromosome CDS1884132 699 - 0.46495
dapE Succinyl-diaminopimelic descuccinlyase (ArgE/DapE/Acy1 family protein)chromosome CDS156408 1374 + 0.462154
dctA Dicarboxylate/amino acid:cation (Na+ or H+) symporterchromosome CDS1575376 960 + 0.440625
gdhA NADP-specific glutamate dehydrogenasechromosome CDS1179472 1347 + 0.429102
glnA Glutamine synthetase type 1chromosome CDS448511 1347 + 0.424647
glnH ABC transporter substrate-binding protein-glutamine-binding proteinchromosome CDS1250615 816 - 0.39951
glnH ABC transporter substrate binding protein-glutamine transportchromosome CDS404650 936 - 0.425214
glnH ABC transporter substrate-binding protein-glutamine transportchromosome CDS1336103 837 - 0.371565
glnH ABC transporter substrate-binding protein-glutamine transport/Major cell binding factor precursorchromosome CDS533461 795 - 0.430189
glnP ABC transporter membrane-spanning permease-glutamine transportchromosome CDS631044 678 - 0.417404
glnP ABC transporter membrane spanning permease-glutamine transportchromosome CDS1119658 2166 + 0.393813
glnP ABC transporter membrane-spanning permease-glutamine transportchromosome CDS532771 678 - 0.439528
glnP ABC transporter membrane-spanning permease-glutamine transportchromosome CDS1337591 699 - 0.406295
glnP ABC transporter membrane-spanning permease-glutamine transportchromosome CDS631681 681 - 0.461087
glnP ABC transporter membrane-spanning permease-glutamine transportchromosome CDS726847 690 + 0.392754
glnP ABC transporter membrane-spanning permease-glutamine transportchromosome CDS532102 660 - 0.427273
glnQ ABC transporter ATP-binding protein-glutamine transportchromosome CDS630285 759 - 0.433465
glnQ ABC transporter ATP-binding protein-glutamine transportchromosome CDS1336952 630 - 0.422222
glnQ ABC transporter ATP-binding protein-glutaminechromosome CDS403910 741 - 0.443995
glnQ ABC transporter ATP-binding protein-glutamine transportchromosome CDS1121823 741 + 0.423752
glnQ ABC transporter ATP-binding protein-glutamine transportchromosome CDS727536 735 + 0.432653
glnQ-truncation ABC transporter ATP-binding protein-glutamine, truncationchromosome CDS534635 390 - 0.415385
glnQ-truncation ABC transporter ATP-binding protein-glutamine, truncationchromosome CDS534266 345 - 0.457971
glyA Serine hydroxymethyltransferasechromosome CDS913285 1257 + 0.425617
hom Homoserine dehydrogenasechromosome CDS1215716 1320 - 0.425758
ilvA Threonine desaminasechromosome CDS401601 1251 + 0.410871
ilvB Acetolactate synthase large subunitchromosome CDS397357 1701 + 0.442093
ilvC Ketol-acid reductoisomerasechromosome CDS399592 1023 + 0.402737
ilvD Dihydroxyacid dehydratasechromosome CDS1916000 1704 - 0.4777
ilvE Branched-chain-amino-acid transaminasechromosome CDS754851 1023 + 0.41349
ilvN Acetolactate synthase small subunitchromosome CDS399026 501 + 0.44511
leuA-truncation 2-isopropylmalate synthase, truncationchromosome CDS1138704 435 - 0.418391
leuA-truncation 2-isopropylmalate synthase, truncationchromosome CDS1139166 633 - 0.415482
leuB 3-isopropylmalate dehydrogenasechromosome CDS1137655 1038 - 0.431599
leuD-truncation 3-isopropylmalate dehydratase small subunit, truncationchromosome CDS1137026 360 - 0.427778
lguL Lactoylglutathione lyasechromosome CDS856499 432 + 0.402778
licB Homologous to LicB, which regulates expression of LPS epitopes in H. influenzaechromosome CDS1147539 891 - 0.399551
livF ABC transporter ATP-binding protein-branched chain amino acid transportchromosome CDS666476 711 + 0.413502
livG ABC transporter ATP-binding protein-branched chain amino acid transportchromosome CDS665712 765 + 0.388235
livH ABC transporter membrane-spanning permease-branched chain amino acid transportchromosome CDS663874 879 + 0.431172
livJ ABC transporter substrate-binding protein-branched chain amino acid transportchromosome CDS662455 1161 + 0.414298
livM ABC transporter membrane-spanning permease-branched chain amino acid transportchromosome CDS664756 957 + 0.407524
lysA Diaminopimelate decarboxylasechromosome CDS1763512 1251 - 0.451639
lysC Aspartate kinasechromosome CDS374072 1365 - 0.426374
mefE ABC transporter membrane-spanning permease-macrolide effluxchromosome CDS953383 1212 + 0.305281
metA Homoserine O-succinyltransferasechromosome CDS1417596 945 - 0.414815
metB Cystathionine gamma-synthasechromosome CDS1360403 1095 - 0.444749
metE Tetrahydropteroyltriglutamatemethyltransferasechromosome CDS511802 2394 + 0.426483
metF 5,10-methylenetetrahydrofolate reductasechromosome CDS514259 867 + 0.438293
metY-truncation O-acetylhomoserine sulfhydrylase, truncationchromosome CDS1093409 123 - 0.382114
metY-truncation O-acetylhomoserine sulfhydrylase, truncationchromosome CDS1092272 1116 - 0.424731
nifS Pyridoxal-phosphate dependent aminotransferasechromosome CDS984159 1116 - 0.429211
npl-truncation N-acetylneuraminate lyase subunit, truncationchromosome CDS1498242 732 - 0.431694
npl-truncation N-acetylneuraminate lyase subunit, truncationchromosome CDS1183359 732 - 0.43306
nspC Carboxynorspermidine decarboxylasechromosome CDS823191 1128 + 0.426418
oxlT Major facilitator:Oxalate:Formate Antiporterchromosome CDS1425561 1227 - 0.405868
pabB Para-aminobenzoate synthetasechromosome CDS597147 1722 + 0.430894
patB Aminotransferasechromosome CDS1359229 1167 - 0.416452
pepB Group B oligopeptidasechromosome CDS872639 1803 + 0.42041
pepC Aminopeptidase Cchromosome CDS259029 1335 + 0.436704
pepF Similar to oligoendopeptidasechromosome CDS1581428 1797 - 0.456873
pepN Aminopeptidase Nchromosome CDS704637 2547 + 0.442874
pepP Aminopeptidase Pchromosome CDS182039 1062 + 0.435028
pepQ Dipeptidasechromosome CDS1430643 1083 + 0.43952
pepS Aminopeptidasechromosome CDS256296 1242 + 0.466184
pepT Aminotripeptidase; tripeptidasechromosome CDS900731 1221 - 0.423423
pepV Dipeptidasechromosome CDS548029 1401 + 0.442541
pheA Prephenate dehydratasechromosome CDS1225020 849 - 0.426384
pmrA Major facilitator superfamily multi-drug resistance efflux pumpchromosome CDS866211 1200 + 0.431667
potA ABC transporter ATP-binding protein-spermidine/putrescine transportchromosome CDS1245411 1158 - 0.450777
potB ABC transporter membrane-spanning permease-spermidine/putrescine transportchromosome CDS1244624 828 - 0.423913
potC ABC transporter membrane-spanning permease-spermidine/putrescine transportchromosome CDS1243854 774 - 0.423773
potD ABC transporter substrate-binding protein-spermidine/putrescine transportchromosome CDS1242787 1071 - 0.416433
proA Gamma-glutamyl phosphate reductasechromosome CDS834084 1263 + 0.454473
proB Gamma-glutamyl kinasechromosome CDS832944 1131 + 0.440318
proC Pyrroline-5-carboxylate reductasechromosome CDS835350 798 + 0.444862
proV ABC transporter ATP-binding protein-choline transporterchromosome CDS1650495 729 - 0.421125
prs Ribose-phosphate pyrophosphokinasechromosome CDS985284 960 - 0.407292
prsA Phosphoribosylpyrophosphate synthasechromosome CDS28583 1020 + 0.416667
ptrB Protease II (oligopeptidase B)chromosome CDS1200052 1941 - 0.324575
sdaA L-serine dehydratase alpha subunitchromosome CDS102117 873 - 0.479954
sdaB L-serine dehydratase beta subunitchromosome CDS102998 672 - 0.416667
serB-truncation Phosphoserine phosphatase, truncationchromosome CDS1016262 330 + 0.369697
speE Spermidine synthasechromosome CDS821075 861 + 0.445993
spr0120 Hypothetical proteinchromosome CDS127503 300 + 0.303333
spr0144 Conserved hypothetical proteinchromosome CDS152331 1230 + 0.374797
spr0145 Hypothetical proteinchromosome CDS153770 597 + 0.448911
spr0155 Hypothetical proteinchromosome CDS163827 582 + 0.38488
spr0158 Hypothetical proteinchromosome CDS166821 459 - 0.461874
spr0311 Hypothetical proteinchromosome CDS312433 174 + 0.373563
spr0361 Conserved hypothetical proteinchromosome CDS359527 114 + 0.359649
spr0590 Hypothetical proteinchromosome CDS604493 624 + 0.405449
spr0616 Hypothetical proteinchromosome CDS626460 765 + 0.345098
spr0643 Hypothetical proteinchromosome CDS651331 348 + 0.37931
spr0773 Conserved hypothetical proteinchromosome CDS767190 1227 + 0.447433
spr0783 Probable pyridoxal-phosphate dependent aminotransferasechromosome CDS780983 1143 + 0.440945
spr0820 Conserved hypothetical proteinchromosome CDS821932 1260 + 0.415873
spr0822 Conserved hypothetical proteinchromosome CDS824315 1086 + 0.441068
spr1148 Conserved hypothetical proteinchromosome CDS1149293 1041 - 0.399616
spr1174 Strong similarity to chorismate mutase; prephenate dehydratasechromosome CDS1174650 267 - 0.374532
spr1200 Hypothetical proteinchromosome CDS1195742 180 - 0.344444
spr1250 Conserved hypothetical proteinchromosome CDS1249324 1272 + 0.426887
spr1278 Hypothetical proteinchromosome CDS1273808 489 - 0.349693
spr1302 Conserved hypothetical proteinchromosome CDS1295051 957 - 0.426332
spr1305 Hypothetical proteinchromosome CDS1297700 636 - 0.393082
spr1398 Conserved hypothetical proteinchromosome CDS1377128 372 - 0.395161
spr1454 Hypothetical proteinchromosome CDS1437195 630 - 0.38254
spr1461 Conserved hypothetical proteinchromosome CDS1442047 1113 - 0.459119
spr1629 Conserved hypothetical proteinchromosome CDS1602343 1152 - 0.322917
spr1661 Hypothetical proteinchromosome CDS1634203 240 + 0.395833
spr1751 Hypothetical proteinchromosome CDS1720939 360 - 0.327778
spr1908 Conserved hypothetical proteinchromosome CDS1885060 1134 - 0.409171
spr1932 Conserved hypothetical proteinchromosome CDS1913038 1248 - 0.383814
spr1960 Conserved hypothetical proteinchromosome CDS1946639 1332 + 0.448198
spr1983 Conserved hypothetical proteinchromosome CDS1974482 1179 - 0.336726
spxB Pyruvate oxidasechromosome CDS649445 1776 + 0.430743
thrB Homoserine kinasechromosome CDS1214845 870 - 0.458621
thrC Threonine synthasechromosome CDS1847798 1485 - 0.419529
trpA Tryptophan synthase alpha chainchromosome CDS1604542 777 - 0.453024
trpB Tryptophan synthase beta chainchromosome CDS1605311 1224 - 0.485294
trpC Indole-3-glycerol-phosphate synthase.chromosome CDS1607098 768 - 0.466146
trpD Anthranilate phosphoribosyltransferasechromosome CDS1607862 1005 - 0.439801
trpE Anthranilate synthase component Ichromosome CDS1609440 1464 - 0.438525
trpF Phosphoribosylanthranilate isomerase.chromosome CDS1606512 630 - 0.436508
trpG Anthranilate synthase component II (glutamine amido-transferase)chromosome CDS1608877 567 - 0.432099
tyrA Prephenate dehydrogenasechromosome CDS1228058 1104 - 0.442935
yfnA Cationic amino acid transporter-APC Superfamilychromosome CDS889898 1404 + 0.410969