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2024-05-06 02:14:21

Gene list

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COG category: Amino acid transport and metabolism
Organism: Staphylococcus epidermidis RP62A phage SP-beta

Number of genes found: 230

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Staphylococcus epidermidis RP62A phage SP-beta
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SERP2358 amino acid ABC transporter, ATP-binding proteinchromosome CDS2403501 1188 - 0.351852
NA SERP0094 cysteine synthase/cystathionine beta-synthase family proteinchromosome CDS79505 909 + 0.374037
NA SERP2158 amino acid permease family proteinchromosome CDS2186581 1452 + 0.375344
NA SERP2370 peptide ABC transporter, permease proteinchromosome CDS2417888 879 - 0.374289
NA SERP2375 diaminopimelate epimerase family proteinchromosome CDS2423457 840 - 0.361905
NA SERP1399 D-isomer specific 2-hydroxyacid dehydrogenase family proteinchromosome CDS1463472 951 - 0.279706
NA SERP2010 conserved hypothetical proteinchromosome CDS2026367 1473 - 0.279701
NA SERP0528 cytosol aminopeptidasechromosome CDS512262 1482 + 0.348178
NA SERP0896 aspartate kinase family proteinchromosome CDS906216 1377 - 0.31663
NA SERP2142 amino acid permease family proteinchromosome CDS2169022 1380 - 0.349275
NA SERP0953 peptide ABC transporter, permease protein, putativechromosome CDS969316 1002 - 0.298403
NA SERP1920 abortive infection family proteinchromosome CDS1940855 1149 + 0.322019
NA SERP0232 amino acid permease family proteinchromosome CDS238294 1491 + 0.344064
NA SERP0472 conserved hypothetical proteinchromosome CDS472490 189 - 0.275132
NA SERP1780 transporter, putativechromosome CDS1825021 1182 - 0.314721
NA SERP2032 sorbitol dehydrogenase, putativechromosome CDS2052409 1053 + 0.381766
NA SERP0025 major facilitator family transporterchromosome CDS20789 1365 - 0.351648
NA SERP1902 amino acid permeasechromosome CDS1923989 1377 - 0.348584
NA SERP0051 efflux protein, LysE familychromosome CDS43190 633 + 0.279621
NA SERP2000 lipoprotein, putativechromosome CDS2018493 363 - 0.305785
NA SERP0036 trans-sulfuration enzyme family proteinchromosome CDS32490 1176 - 0.386905
NA SERP1280 aminotransferase, class Vchromosome CDS1324368 1140 - 0.315789
NA SERP0461 glyoxalase family proteinchromosome CDS463958 417 - 0.2494
NA SERP1394 amino acid ABC transporter, ATP-binding protein, putativechromosome CDS1449875 723 - 0.31397
NA SERP0329 sugar efflux transporter, putativechromosome CDS332883 1209 + 0.324235
NA SERP1171 urea amidolyase-related proteinchromosome CDS1206034 1005 - 0.315423
NA SERP2048 peptidase, M20/M25/M40 familychromosome CDS2070559 1257 - 0.385839
NA SERP2034 amino acid permease family proteinchromosome CDS2054061 1680 + 0.352381
NA SERP1628 hypothetical proteinchromosome CDS1655372 441 + 0.37415
NA SERP1519 hypothetical proteinchromosome CDS1580918 597 - 0.289782
NA SERP2307 conserved hypothetical proteinchromosome CDS2346438 813 - 0.308733
NA SERP0246 ABC transporter, substrate-binding protein, putativechromosome CDS255075 945 + 0.351323
NA SERP2357 amino acid ABC transporter, permease proteinchromosome CDS2402869 636 - 0.334906
NA SERP1395 amino acid ABC transporter, permease/amino acid-binding protein, putativechromosome CDS1450590 1458 - 0.310014
NA SERP2115 pyruvate oxidasechromosome CDS2139898 1740 - 0.344253
NA SERP2134 aminotransferase, class Ichromosome CDS2159602 1161 - 0.356589
NA SERP1847 drug transporter, putativechromosome CDS1877107 1194 + 0.325796
NA SERP2334 major facilitator superfamily proteinchromosome CDS2371584 1341 - 0.362416
NA SERP0010 conserved hypothetical proteinchromosome CDS7036 396 + 0.361111
NA SERP0119 Orn/Lys/Arg decarboxylasechromosome CDS111697 1338 + 0.30867
NA SERP2367 transporter, putativechromosome CDS2415142 1191 - 0.352645
NA SERP0981 conserved hypothetical proteinchromosome CDS998220 810 - 0.339506
NA SERP0902 amino acid permease family proteinchromosome CDS912874 1449 - 0.322981
NA SERP2441 transporter, putativechromosome CDS2497936 1362 - 0.328928
NA SERP0378 urea amidolyase-related proteinchromosome CDS374374 1005 + 0.345274
NA SERP0633 aminotransferase, class Ichromosome CDS624509 1185 - 0.335021
NA SERP2030 amino acid ABC transporter, permease proteinchromosome CDS2050025 636 - 0.323899
NA SERP2069 major facilitator superfamily proteinchromosome CDS2094468 1275 - 0.363137
NA SERP1904 conserved hypothetical proteinchromosome CDS1925764 357 + 0.319328
NA SERP2340 drug resistance transporter, EmrB/QacA familychromosome CDS2385517 1419 - 0.350951
NA SERP0395 membrane protein, putativechromosome CDS396498 876 - 0.313927
NA SERP0223 major facilitator family transporterchromosome CDS231998 1395 + 0.321147
NA SERP2159 aminotransferase, class IIIchromosome CDS2188159 1338 - 0.365471
NA SERP2253 peptidase, M20/M25/M40 familychromosome CDS2282118 1245 - 0.324498
NA SERP2041 glutamate synthase-related proteinchromosome CDS2061776 1578 + 0.352978
NA SERP1451 nitric-oxide synthase, oxygenase subunitchromosome CDS1516282 1068 + 0.317416
NA SERP2018 membrane protein, putativechromosome CDS2036441 1830 - 0.329508
NA SERP1094 proline dipeptidasechromosome CDS1138550 1062 - 0.317326
NA SERP2005 amino acid ABC transporter, amino acid-binding proteinchromosome CDS2022567 789 - 0.316857
NA SERP0598 chromosome pseudo591460 201 - 0.323383
NA SERP0164 ATP:guanido phosphotransferase family proteinchromosome CDS167981 1008 + 0.327381
NA SERP1101 glycine cleavage system P protein, subunit 1chromosome CDS1144334 1347 - 0.327394
NA SERP1417 aminopeptidase family proteinchromosome CDS1480742 1242 - 0.342995
NA SERP2017 amino acid permease family proteinchromosome CDS2034917 1377 + 0.323893
NA SERP0197 alcohol dehydrogenase, zinc-containingchromosome CDS206078 1032 + 0.300388
NA SERP0952 peptide ABC transporter, permease protein, putativechromosome CDS968472 855 - 0.316959
NA SERP1186 aminotransferase, class Vchromosome CDS1221884 1143 - 0.319335
NA SERP2371 peptide ABC transporter, permease protein, putativechromosome CDS2418763 936 - 0.354701
NA SERP1072 peptidase T-like proteinchromosome CDS1117752 1125 - 0.363556
NA SERP0927 amino acid carrier proteinchromosome CDS941660 1458 + 0.354595
NA SERP1310 dipeptidase family proteinchromosome CDS1359201 1410 - 0.346809
NA SERP1354 conserved hypothetical proteinchromosome CDS1411712 786 - 0.3257
NA SERP0157 transcriptional regulator, GntR familychromosome CDS160782 1365 - 0.29011
NA SERP0009 conserved hypothetical proteinchromosome CDS6661 360 + 0.347222
NA SERP0951 peptide ABC transporter, ATP-binding protein, putativechromosome CDS967733 777 - 0.292149
NA SERP0726 DNA-dependent DNA polymerase family Xchromosome CDS723150 1710 + 0.337427
NA SERP0037 trans-sulfuration enzyme family proteinchromosome CDS33662 1104 - 0.34692
NA SERP2355 amino acid ABC transporter, permease proteinchromosome CDS2401241 648 - 0.351852
NA SERP1944 drug resistance transporter, EmrB/QacA familychromosome CDS1958356 1977 - 0.335862
NA SERP2369 peptide ABC transporter, ATP-binding proteinchromosome CDS2417086 816 - 0.348039
NA SERP0605 membrane protein, putativechromosome CDS597258 1194 - 0.340871
NA SERP1739 conserved hypothetical proteinchromosome CDS1778516 1191 - 0.310663
NA SERP2364 peptidase, M20/M25/M40 familychromosome CDS2410022 1218 + 0.350575
NA SERP0950 peptide ABC transporter, ATP-binding protein, putativechromosome CDS967035 696 - 0.283046
NA SERP0385 ABC transporter, ATP-binding proteinchromosome CDS385141 975 + 0.333333
NA SERP1667 acetolactate synthase, small subunit, truncationchromosome CDS1706411 234 + 0.273504
NA SERP1868 transporter, putativechromosome CDS1893690 903 - 0.327796
NA SERP1434 conserved hypothetical proteinchromosome CDS1495620 543 - 0.289134
NA SERP1541 conserved hypothetical proteinchromosome CDS1595010 405 + 0.281481
NA SERP1297 chorismate mutase/phospho-2-dehydro-3-deoxyheptonate aldolasechromosome CDS1344678 1092 - 0.331502
NA SERP2541 homoserine O-acetyltransferase, putativechromosome CDS2599586 969 - 0.359133
NA SERP1287 aminotransferase, class Vchromosome CDS1330620 1164 + 0.339347
NA SERP1260 amino acid permease family proteinchromosome CDS1300307 1359 + 0.340692
NA SERP1778 conserved hypothetical proteinchromosome CDS1822209 1062 - 0.308851
NA SERP2031 amino acid ABC transporter, ATP-binding proteinchromosome CDS2050663 1257 - 0.333333
NA SERP2023 transporter, putativechromosome CDS2042550 1401 - 0.34975
NA SERP1172 conserved hypothetical protein TIGR00370chromosome CDS1207028 732 - 0.308743
NA SERP0192 ornithine cyclodeaminase/mu-crystallin family proteinchromosome CDS201102 951 + 0.333333
NA SERP2380 drug transporter, putativechromosome CDS2426704 1377 - 0.342048
NA SERP2071 glycine oxidase, putativechromosome CDS2097006 1119 + 0.360143
NA SERP2028 amino acid ABC transporter, permease proteinchromosome CDS2048369 696 - 0.327586
NA SERP2124 hypothetical proteinchromosome CDS2148893 465 - 0.303226
NA SERP0095 trans-sulfuration enzyme family proteinchromosome CDS80406 1146 + 0.354276
NA SERP2270 major facilitator superfamily proteinchromosome CDS2302918 1173 - 0.313726
NA SERP1994 ABC transporter, substrate-binding proteinchromosome CDS2012875 1476 + 0.319106
NA SERP2368 peptide ABC transporter, ATP-binding proteinchromosome CDS2416344 750 - 0.345333
NA SERP2339 drug transporter, putativechromosome CDS2383754 1242 - 0.301932
NA SERP2401 serine proteasechromosome CDS2462460 735 - 0.331973
NA SERP2543 azlC protein, putativechromosome CDS2601169 693 - 0.363636
NA SERP2112 alcohol dehydrogenase, zinc-containingchromosome CDS2135452 1053 + 0.339981
NA SERP0035 homocysteineS-methyltransferase/5- methyltetrahydrofolate--homocysteine methyltransferase, putativechromosome CDS30698 1839 - 0.362153
NA SERP1245 amino acid permease family proteinchromosome CDS1279661 1503 - 0.342648
NA SERP2004 amino acid ABC transporter, permease proteinchromosome CDS2021867 720 - 0.35
NA SERP1768 drug transporter, putativechromosome CDS1812225 1338 - 0.295217
NA SERP1766 drug resistance transporter, EmrB/QacA familychromosome CDS1809858 1440 - 0.346528
NA SERP2372 peptide ABC transporter, peptide-binding proteinchromosome CDS2419711 1599 - 0.341463
NA SERP1100 glycine cleavage system P protein, subunit 2chromosome CDS1142833 1509 - 0.335984
NA SERP1319 drug transporter, putativechromosome CDS1380147 1215 - 0.326749
NA SERP0392 di-tripeptide transporter, putativechromosome CDS394195 1506 - 0.342629
NA SERP2003 amino acid ABC transporter, ATP-binding proteinchromosome CDS2021139 732 - 0.345628
NA SERP2342 drug transporter, putativechromosome CDS2388076 1449 + 0.322981
NA SERP0955 oligoendopeptidase F, putativechromosome CDS971082 1812 + 0.3383
NA SERP0883 conserved hypothetical proteinchromosome CDS896005 1026 - 0.345029
ald SERP1272 alanine dehydrogenasechromosome CDS1316789 1116 - 0.358423
ansA SERP1046 L-asparaginasechromosome CDS1091905 969 + 0.339525
arcA SERP2250 arginine deiminasechromosome CDS2277613 1236 - 0.347896
arcB-1 SERP2249 ornithine carbamoyltransferasechromosome CDS2276501 1008 - 0.343254
arcB-2 SERP2351 ornithine carbamoyltransferasechromosome CDS2396476 1002 + 0.365269
arcC SERP2352 carbamate kinasechromosome CDS2397500 933 + 0.374062
arcD SERP2247 arginine/ornithine antiporterchromosome CDS2274833 1404 - 0.342593
argB SERP1090 acetylglutamate kinasechromosome CDS1134833 738 - 0.298103
argC SERP1092 N-acetyl-gamma-glutamyl-phosphate reductasechromosome CDS1136791 1026 - 0.316764
argD SERP1089 acetylornithine aminotransferasechromosome CDS1133703 1128 - 0.33156
argG SERP0549 argininosuccinate synthasechromosome CDS534348 1206 - 0.349917
argH SERP0548 argininosuccinate lyasechromosome CDS532967 1392 - 0.34842
argJ SERP1091 glutamate N-acetyltransferase/amino-acid acetyltransferasechromosome CDS1135580 1194 - 0.351759
aroA SERP1034 3-phosphoshikimate 1-carboxyvinyltransferasechromosome CDS1079163 1302 - 0.348694
aroB SERP1035 3-dehydroquinate synthasechromosome CDS1080474 1065 - 0.299531
aroC SERP1036 chorismate synthasechromosome CDS1081566 1167 - 0.375321
aroD SERP0481 3-dehydroquinate dehydratase, type Ichromosome CDS476880 717 + 0.352859
aroE SERP1163 shikimate 5-dehydrogenasechromosome CDS1198852 810 - 0.3
aroK SERP1103 shikimate kinasechromosome CDS1147009 498 - 0.285141
asd SERP0964 aspartate-semialdehyde dehydrogenasechromosome CDS982834 990 + 0.346465
bcr SERP2014 bicyclomycin resistance proteinchromosome CDS2031613 1200 + 0.335
betA SERP2176 choline dehydrogenasechromosome CDS2206974 1719 - 0.383944
brnQ-1 SERP0977 branched-chain amino acid transport system II carrier proteinchromosome CDS993591 1344 - 0.324405
brnQ-2 SERP2363 branched-chain amino acid transport system II carrier proteinchromosome CDS2408310 1359 - 0.33922
budB SERP2155 acetolactate synthase, catabolicchromosome CDS2181657 1665 - 0.353754
capC SERP2106 capC proteinchromosome CDS2130360 453 - 0.313466
carA SERP0768 carbamoyl-phosphate synthase, small subunitchromosome CDS766435 1101 + 0.375114
carB SERP0769 carbamoyl-phosphate synthase, large subunitchromosome CDS767528 3174 + 0.362319
cysE SERP0169 serine acetyltransferasechromosome CDS176657 642 + 0.34891
cysH SERP2192 phosophoadenylyl-sulfate reductasechromosome CDS2226564 732 - 0.329235
cysK SERP0152 cysteine synthasechromosome CDS144247 933 + 0.370847
dapA SERP0965 dihydrodipicolinate synthasechromosome CDS983825 885 + 0.338983
dapB SERP0966 dihydrodipicolinate reductasechromosome CDS984709 723 + 0.348548
dapD SERP0967 2,3,4,5-tetrahydropyridine-2,6-dicarboxylateN-su ccinyltransferasechromosome CDS985453 723 + 0.377593
dat SERP1309 D-alanine aminotransferasechromosome CDS1358349 849 - 0.326266
dep SERP2103 gamma-glutamyltranspeptidasechromosome CDS2127505 1605 - 0.325857
femC SERP0876 glutamine synthetase FemCchromosome CDS890486 1341 + 0.35123
fosB SERP2349 fosfomycin resistance proteinchromosome CDS2395235 429 - 0.296037
gcvH SERP0485 glycine cleavage system H proteinchromosome CDS479395 381 + 0.341207
gcvT SERP1102 glycine cleavage system T proteinchromosome CDS1145700 1092 - 0.337912
gltD SERP0109 glutamate synthase, small subunitchromosome CDS96862 1464 + 0.378415
gltS SERP1935 sodium:glutamate symporterchromosome CDS1951916 1209 + 0.335815
gluD SERP0546 glutamate dehydrogenase, NAD-specificchromosome CDS530332 1245 + 0.3751
glyA SERP1719 serine hydroxymethyltransferasechromosome CDS1757744 1239 - 0.34544
gntP SERP2057 gluconate transporter, permease proteinchromosome CDS2081933 1359 - 0.362767
hisA SERP2302 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerasechromosome CDS2342596 705 - 0.339007
hisB SERP2304 imidazoleglycerol-phosphate dehydratasechromosome CDS2343868 579 - 0.336788
hisC SERP0387 histidinol-phosphate aminotransferasechromosome CDS387825 1056 + 0.326705
hisD SERP2305 histidinol dehydrogenasechromosome CDS2344562 1245 - 0.359839
hisF SERP2301 imidazoleglycerol phosphate synthase, cyclase subunitchromosome CDS2341841 759 - 0.357049
hisG SERP2306 ATP phosphoribosyltransferasechromosome CDS2345799 615 - 0.336585
hisH SERP2303 amidotransferase HisHchromosome CDS2343293 579 - 0.354059
hisIE SERP2300 phosphoribosyl-AMP pyrophosphatase/phosphoribosyl-ATP cyclohydrolasechromosome CDS2341209 636 - 0.34434
hom SERP0897 homoserine dehydrogenasechromosome CDS907781 1281 + 0.322404
hutG SERP1919 formiminoglutamasechromosome CDS1939672 936 - 0.353632
ilvA SERP1673 threonine dehydratasechromosome CDS1712334 1269 + 0.320725
ilvB SERP1666 acetolactate synthase, large subunit, biosynthetic typechromosome CDS1704708 1704 + 0.356808
ilvC SERP1668 ketol-acid reductoisomerasechromosome CDS1706761 1005 + 0.355224
ilvD SERP1665 dihydroxy-acid dehydratasechromosome CDS1702964 1689 + 0.383067
ilvE SERP0195 branched-chain amino acid aminotransferasechromosome CDS204021 1077 + 0.357474
leuA SERP1669 2-isopropylmalate synthasechromosome CDS1707788 1536 + 0.345703
leuB SERP1670 3-isopropylmalate dehydrogenasechromosome CDS1709320 1044 + 0.332375
leuC SERP1671 3-isopropylmalate dehydratase, large subunitchromosome CDS1710379 1371 + 0.355945
leuD SERP1672 3-isopropylmalate dehydratase, small subunitchromosome CDS1711750 570 + 0.324561
lysA SERP0970 diaminopimelate decarboxylasechromosome CDS988563 1266 + 0.348341
lysC SERP0963 aspartokinase, alpha and beta subunitschromosome CDS981561 1203 + 0.334996
metE SERP0034 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferasechromosome CDS28455 2247 - 0.348465
norA SERP0353 quinolone resistance protein NorAchromosome CDS352474 1164 + 0.321306
oppA SERP0574 oligopeptide ABC transporter, oligopeptide-binding proteinchromosome CDS567431 1644 + 0.324818
oppB SERP0570 oligopeptide ABC transporter, permease proteinchromosome CDS563383 927 + 0.322546
oppC SERP0571 oligopeptide ABC transporter, permease proteinchromosome CDS564438 942 + 0.345011
oppD SERP0572 oligopeptide ABC transporter, ATP-binding protein OppDchromosome CDS565394 1080 + 0.362037
oppF SERP0573 oligopeptide ABC transporter, ATP-binding protein OppFchromosome CDS566466 939 + 0.329073
pabA SERP0374 para-aminobenzoate synthase, glutamine amidotransferase, component IIchromosome CDS371043 588 + 0.341837
pepF SERP0580 oligoendopeptidase Fchromosome CDS574567 1809 + 0.334992
pepQ SERP1271 proline dipeptidasechromosome CDS1315670 1056 + 0.330492
pepT SERP0410 peptidase Tchromosome CDS410782 1239 - 0.358354
pheA SERP1452 prephenate dehydratasechromosome CDS1517368 804 + 0.314677
potA SERP0686 spermidine/putrescine ABC transporter, ATP-binding proteinchromosome CDS681714 1095 + 0.316895
potB SERP0687 spermidine/putrescine ABC transporter, permease protein PotBchromosome CDS682801 804 + 0.303483
potC SERP0688 spermidine/putrescine ABC transporter, permease protein PotCchromosome CDS683610 813 + 0.322263
potD SERP0689 spermidine/putrescine ABC transporter, spermidine/putrescine-binding proteinchromosome CDS684419 1074 + 0.321229
proC SERP1065 pyrroline-5-carboxylate reductasechromosome CDS1109403 816 + 0.306373
prsA SERP0138 ribose-phosphate pyrophosphokinasechromosome CDS128259 966 + 0.359213
putA SERP1324 proline dehydrogenasechromosome CDS1385177 1002 + 0.302395
putP SERP1440 proline permeasechromosome CDS1502510 1536 + 0.344401
rocD SERP0545 ornithine aminotransferasechromosome CDS529033 1191 + 0.374475
sdhA SERP2094 L-serine dehydratase, iron-sulfur-dependent, alpha subunitchromosome CDS2118833 900 - 0.398889
sdhB SERP2095 L-serine dehydratase, iron-sulfur-dependent, beta subunitchromosome CDS2119745 684 - 0.323099
sepA SERP2252 extracellular elastase precursorchromosome CDS2280162 1524 - 0.354331
serA SERP1288 D-3-phosphoglycerate dehydrogenasechromosome CDS1331773 1596 + 0.344612
sspA SERP1397 glutamyl endopeptidase precursor SspAchromosome CDS1453570 849 - 0.316843
sufS SERP0498 cysteine desulfurase SufSchromosome CDS487782 1242 + 0.353462
tcaB SERP1947 tcaB proteinchromosome CDS1961721 1212 - 0.334158
thrB SERP0899 homoserine kinasechromosome CDS910133 921 + 0.344191
thrC SERP0898 threonine synthasechromosome CDS909067 1065 + 0.337089
trpA SERP0943 tryptophan synthase, alpha subunitchromosome CDS959661 732 + 0.297814
trpB SERP0942 tryptophan synthase, beta subunitchromosome CDS958460 1209 + 0.362283
trpC SERP0940 indole-3-glycerol phosphate synthasechromosome CDS957055 789 + 0.283904
trpD SERP0939 anthranilate phosphoribosyltransferasechromosome CDS956056 996 + 0.318273
trpE SERP0937 anthranilate synthase component Ichromosome CDS954084 1407 + 0.295665
trpF SERP0941 N-(5'phosphoribosyl)-anthranilate isomerasechromosome CDS957833 624 + 0.283654
trpG SERP0938 anthranilate synthase component IIchromosome CDS955487 567 + 0.305115
tyrA SERP0936 prephenate dehydrogenasechromosome CDS952337 1089 - 0.30854
ureA SERP1869 urease, gamma subunitchromosome CDS1894860 303 + 0.386139
ureB SERP1870 urease, beta subunitchromosome CDS1895176 402 + 0.368159
ureC SERP1871 urease, alpha subunitchromosome CDS1895580 1716 + 0.37704