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2024-04-30 23:32:28

Gene list

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COG category: Amino acid transport and metabolism
Organism: Bdellovibrio bacteriovorus, HD100 = DSM 50701 = ATCC 15356 = ICPB 3268 NCIB 9529

Number of genes found: 209

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Bdellovibrio bacteriovorus, HD100 = DSM 50701 = ATCC 15356 = ICPB 3268 NCIB 9529
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Bd1962 putative V8-like Glu-specific endopeptidasechromosome CDS1875478 870 + 0.487356
NA Bd1391 putative trypsinchromosome CDS1316694 852 + 0.514085
NA Bd3220 hypothetical protein predicted by Glimmer/Criticachromosome CDS3141694 858 - 0.497669
NA Bd1987 amino acid ABC transporter, periplasmicchromosome CDS1899122 714 + 0.501401
NA Bd2868 hypothetical protein predicted by Glimmer/Criticachromosome CDS2777717 1152 + 0.524306
NA Bd3572 hypothetical protein predicted by Glimmer/Criticachromosome CDS3473668 1146 + 0.508726
NA Bd2779 putative amine oxidasechromosome CDS2690950 1623 + 0.526186
NA Bd2540 amine oxidase, flavin-containingchromosome CDS2447370 1539 - 0.564652
NA Bd2194 hypothetical protein predicted by Glimmer/Criticachromosome CDS2094834 945 - 0.491005
NA Bd2238 permease of DMT superfamilychromosome CDS2136768 930 + 0.510753
NA Bd1003 conserved hypothetical proteinchromosome CDS950557 366 + 0.530055
NA Bd1916 hypothetical protein predicted by Glimmer/Criticachromosome CDS1830757 141 - 0.489362
NA Bd1603 putative formiminoglutamasechromosome CDS1533585 858 + 0.502331
NA Bd2390 conserved hypothetical proteinchromosome CDS2296904 606 + 0.513201
NA Bd1786 conserved hypothetical proteinchromosome CDS1715066 744 - 0.487903
NA Bd1084 putative metalloproteasechromosome CDS1027580 1356 + 0.503687
NA Bd2438 transmembrane proteinchromosome CDS2346170 936 + 0.526709
NA Bd0692 glycine dehydrogenasechromosome CDS641565 2877 - 0.518596
NA Bd1689 hypothetical protein predicted by Glimmer/Criticachromosome CDS1625547 1224 + 0.392974
NA Bd2519 dipeptidyl anminopeptidasechromosome CDS2424718 1980 + 0.509091
NA Bd2520 putative lactoylglutathione lyasechromosome CDS2426743 357 - 0.456583
NA Bd3616 probable spermidine synthasechromosome CDS3512217 1287 + 0.490287
NA Bd0489 putative transporterchromosome CDS457275 765 + 0.526797
NA Bd1890 hypothetical protein predicted by Glimmer/Criticachromosome CDS1812821 216 - 0.416667
NA Bd1349 putative amino acid ABC transporterchromosome CDS1274740 744 - 0.426075
NA Bd1720 putative permeasechromosome CDS1655684 1257 + 0.509149
NA Bd0984 conserved hypothetical proteinchromosome CDS929462 441 - 0.535147
NA Bd0777 ABC-transporter, periplasmic domainchromosome CDS732662 729 - 0.491084
NA Bd3355 hypothetical proteinchromosome CDS3266057 1974 + 0.507092
NA Bd3883 putative cysteine protease (Transglutaminase-like)chromosome CDS3749426 1935 - 0.512662
NA Bd2308 MFS transporterchromosome CDS2202639 1197 - 0.524645
NA Bd1430 conserved hypothetical proteinchromosome CDS1348780 321 - 0.492212
NA Bd3543 4-hydroxyphenylpyruvate dioxygenasechromosome CDS3446290 1059 - 0.487252
NA Bd2747 hypothetical protein predicted by Glimmer/Criticachromosome CDS2668168 450 + 0.506667
NA Bd3440 hypothetical proteinchromosome CDS3351894 1128 + 0.512411
NA Bd3387 branched-chain amino acid ABC transporter, permease proteinchromosome CDS3294498 972 + 0.522634
NA Bd0008 hypothetical protein predicted by Glimmer/Criticachromosome CDS9925 357 + 0.445378
NA Bd0264 putative membrane proteinchromosome CDS252777 888 - 0.504505
NA Bd3796 cystathionine beta-synthasechromosome CDS3668019 1047 - 0.484241
NA Bd1840 putative permeasechromosome CDS1767552 1356 - 0.526549
NA Bd3386 branched-chain amino acid ABC transporter, permease proteinchromosome CDS3293596 903 + 0.529347
NA Bd2485 chromosome CDS2385989 1089 - 0.543618
NA Bd2450 ABC transporter, periplasmic amino acid-binding proteinchromosome CDS2359102 720 + 0.513889
NA Bd3632 conserved hypothetical proteinchromosome CDS3527833 447 - 0.550336
NA Bd0731 hypothetical protein predicted by Glimmer/Criticachromosome CDS692428 1218 - 0.514778
NA Bd2418 Zinc carboxypeptidase-related proteinchromosome CDS2325923 1017 - 0.533923
NA Bd1776 putative carboxypeptidasechromosome CDS1707889 648 - 0.523148
NA Bd3466 Prolyl oligopeptidase family proteinchromosome CDS3375366 2106 - 0.51377
NA Bd3879 hypothetical protein predicted by Glimmer/Criticachromosome CDS3744849 1080 + 0.513889
NA Bd0333 ampG proteinchromosome CDS316952 1344 - 0.550595
NA Bd3555 hypothetical protein predicted by Glimmer/Criticachromosome CDS3457328 771 + 0.490272
NA Bd3499 hypothetical protein predicted by Glimmer/Criticachromosome CDS3409126 312 - 0.503205
NA Bd1419 Spermidine/putrescine transport ATP-binding protein potAchromosome CDS1340609 879 + 0.535836
NA Bd1577 multidrug resistance proteinchromosome CDS1507123 1188 - 0.531987
NA Bd0684 aminomethyltransferasechromosome CDS633125 1083 - 0.517082
NA Bd0257 conserved hypothetical proteinchromosome CDS246713 756 - 0.47619
NA Bd1429 putative amino acid ABC transporterchromosome CDS1348014 765 + 0.488889
NA Bd3537 chromosome CDS3440007 1743 + 0.512909
NA Bd1810 tryptophan 2,3-dioxygenasechromosome CDS1738019 1080 - 0.501852
NA Bd0683 glycine cleavage system protein H homologuechromosome CDS632725 390 - 0.446154
NA Bd0205 putative haloacid dehalogenase-like hydrolasechromosome CDS192048 744 - 0.505376
NA Bd2855 putative ABC amino acid transporter solute binding proteinchromosome CDS2762320 864 + 0.511574
NA Bd2246 oxidoreductasechromosome CDS2143378 1614 + 0.52974
NA Bd3273 putative metalloendopeptidasechromosome CDS3193851 789 + 0.499366
NA Bd2028 leucine dehydrogenasechromosome CDS1937302 1131 + 0.500442
NA Bd0660 conserved hypothetical proteinchromosome CDS611069 1095 - 0.50411
NA Bd2041 ABC polar amino acid transport systemchromosome CDS1948997 741 - 0.462888
NA Bd3265 probable transmembrane proteinchromosome CDS3180694 897 + 0.544036
NA Bd1237 probable amino-acid ABC transporterchromosome CDS1173393 738 - 0.501355
NA Bd0505 hypothetical protein predicted by Glimmer/Criticachromosome CDS474641 822 + 0.46837
NA Bd3573 polar amino acid transport system substrate-binding proteinchromosome CDS3474815 798 - 0.477444
NA Bd1773 ABC transporter solute-binding protein-amino acid transportchromosome CDS1704959 798 + 0.528822
NA Bd0689 conserved hypothetical proteinchromosome CDS638755 825 + 0.505455
NA Bd0754 putative proteasechromosome CDS716548 534 - 0.488764
NA Bd0728 probable amino-acid ABC transporter binding proteinchromosome CDS690428 732 - 0.484973
NA Bd3385 branched-chain amino acid ABC transporter, amino acid-binding proteinchromosome CDS3292466 1122 + 0.519608
NA Bd1989 hypothetical protein predicted by Glimmer/Criticachromosome CDS1901815 567 - 0.506173
NA Bd2034 isopenicillin N epimerasechromosome CDS1943358 1182 - 0.468697
NA Bd1386 Cys/Met metabolism lyase (PLP-dependent)chromosome CDS1312215 1281 + 0.506635
NA Bd0340 lipase/acylhydrolase domain proteinchromosome CDS322819 600 + 0.473333
NA Bd0456 putative lactoylglutathione lyasechromosome CDS427304 429 + 0.531469
NA Bd0717 glutamate dehydrogenasechromosome CDS674101 1275 - 0.504314
NA Bd0173 hypothetical protein predicted by Glimmer/Criticachromosome CDS160205 2766 - 0.505423
NA Bd0597 ABC-type transporter, periplasmic componentchromosome CDS555972 741 + 0.504723
NA Bd1710 chromosome CDS1644141 990 + 0.531313
NA Bd1057 ABC transporter, periplasmic domainchromosome CDS1002434 879 - 0.518771
NA Bd1376 putative ribose ABC transporterchromosome CDS1299964 1749 + 0.515723
NA Bd2657 hypothetical protein predicted by Glimmer/Criticachromosome CDS2579255 387 - 0.501292
NA Bd0356 putative arginase (Fragment)chromosome CDS332962 1056 - 0.528409
NA Bd0925 chromosome CDS877599 282 - 0.443262
NA Bd2877 putative ABC-type amino acid transport periplasmic proteinchromosome CDS2790950 765 + 0.479739
NA Bd1518 aminopeptidasechromosome CDS1440967 2061 - 0.516739
NA Bd2783 putative amino acid ABC transporter binding proteinchromosome CDS2694865 783 + 0.494253
NA Bd0844 ABC-type transporter, periplasmic domainchromosome CDS792160 825 + 0.490909
NA Bd1771 putative amino acid transporterchromosome CDS1704177 786 + 0.505089
NA Bd3496 conserved hypothetical proteinchromosome CDS3407617 513 - 0.504873
NA Bd2888 hypothetical protein predicted by Glimmer/Criticachromosome CDS2797773 207 + 0.521739
NA Bd2651 ABC amino acid transporter, periplasmic proteinchromosome CDS2576389 741 + 0.537112
NA Bd0150 hypothetical protein predicted by Glimmer/Criticachromosome CDS135732 1011 + 0.504451
NA Bd3441 conserved hypothetical proteinchromosome CDS3353153 687 + 0.494905
NA Bd2089 amino acid ABC transporter, periplasmic amino acid-bindingchromosome CDS2003518 774 + 0.488372
NA Bd3055 hypothetical proteinchromosome CDS2963236 1149 + 0.521323
NA Bd0693 Major facilitator family transporterchromosome CDS644543 1185 - 0.555274
alaDH Bd2478 chromosome CDS2380646 1107 - 0.484192
appA Bd2191 ABC transporter, substrate binding proteinchromosome CDS2090912 1695 + 0.483776
appB Bd2192 dipeptide transport system permease protein DppBchromosome CDS2092633 972 + 0.52572
appC Bd2193 ABC transporter, membrane spanning proteinchromosome CDS2093616 1215 + 0.525926
appD Bd2189 putative oligopeptide transport system ATP-binding proteinchromosome CDS2088910 969 + 0.53354
appF Bd2190 oligopeptide ABC transporter, ATP-binding proteinchromosome CDS2089891 990 + 0.508081
argD Bd0127 Acetylornithine/succinyldiaminopimelateaminotran sferasechromosome CDS111549 1377 + 0.501089
aroA Bd3495 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase), EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase),chromosome CDS3406449 1185 - 0.508017
aroAG Bd3486 3-deoxy-7-phosphoheptalonate synthase/chorismate mutasechromosome CDS3396736 1002 + 0.508982
aroB Bd3497 3-dehydroquinate synthetasechromosome CDS3408099 570 - 0.535088
aroC Bd3493 chromosome CDS3403604 1026 - 0.540936
aroE Bd1508 chromosome CDS1429087 834 + 0.534772
aroK Bd3494 shikimate synthasechromosome CDS3404626 1827 - 0.534209
asd Bd0484 aspartate-semialdehyde dehydrogenasechromosome CDS453100 981 + 0.5158
aspA Bd2857 aspartate ammonia-lyase (aspartase)chromosome CDS2764295 1431 - 0.518519
aspC Bd1462 Aspartate aminotransferase, putativechromosome CDS1383445 1164 - 0.521478
aspC Bd0624 aspartate aminotransferasechromosome CDS581773 1203 + 0.528678
aspG Bd3633 asparaginasechromosome CDS3528364 519 + 0.481696
astA Bd0130 arginine N-succinyltransferasechromosome CDS114269 1029 + 0.490768
carA Bd0856 carbamoyl-phosphate synthase small chainchromosome CDS802162 1065 + 0.528638
carB Bd0858 carbamoyl-phosphate synthasechromosome CDS803907 3195 + 0.522066
choA Bd0736 putative cholesterol oxidasechromosome CDS697132 1689 - 0.522795
choD Bd2646 putative cholesterol oxidasechromosome CDS2569433 1749 + 0.545455
cpt Bd3234 carboxypeptidase T precursorchromosome CDS3150940 1239 + 0.535109
csdB Bd0189 chromosome CDS175494 1230 + 0.508943
cysE Bd3116 chromosome CDS3020558 507 - 0.556213
cysM Bd1744 chromosome CDS1678942 990 + 0.521212
dadA Bd0322 D-amino acid dehydrogenasechromosome CDS306292 1248 - 0.526442
dapA Bd0046 dihydrodipicolinate synthasechromosome CDS41100 882 + 0.504535
dapB Bd0047 chromosome CDS41978 690 + 0.505797
dapD Bd1775 chromosome CDS1707055 822 - 0.530414
dapE Bd0129 Succinyl-diaminopimelate desuccinylasechromosome CDS112926 1347 + 0.527097
dapF Bd0045 chromosome CDS40246 858 + 0.54662
dcp Bd3171 peptidyl-dipeptidasechromosome CDS3086497 2040 + 0.489216
dppA Bd0357 ABC-type Dipeptide transport protein, periplasmicchromosome CDS334166 1623 + 0.460875
gcvH Bd0266 glycine cleavage system protein H homologuechromosome CDS254423 417 - 0.484412
ggt Bd3478 chromosome CDS3388420 1734 + 0.540946
glnA Bd0267 chromosome CDS254914 1413 - 0.500354
glnB Bd0268 regulatory protein P-II for glutamine synthetasechromosome CDS256358 339 - 0.501475
glnH Bd0825 Glutamine transport system substrate-binding proteinchromosome CDS775217 789 - 0.504436
glnP Bd0824 polar amino acid transport system permease proteinchromosome CDS774474 744 - 0.525538
glnQ Bd0823 similar to amino acid ABC transporter, ATP-binding proteinchromosome CDS773734 744 - 0.541667
gloA Bd2848 lactoylglutathione lyasechromosome CDS2755661 510 - 0.488235
glt Bd2241 glutamate synthasechromosome CDS2138723 1545 - 0.509385
gltS Bd2623 sodium/glutamate symport carrier proteinchromosome CDS2540005 1185 + 0.536709
glyA Bd2007 serine hydroxymethyltransferasechromosome CDS1920560 1248 - 0.508013
hisB Bd2943 histidinol phosphatasechromosome CDS2853993 984 - 0.520325
hisC Bd1061 histidinol-phosphate aminotransferasechromosome CDS1006897 1119 + 0.487042
hisF Bd1692 Imidazole glycerol phosphate synthase subunit hisFchromosome CDS1628602 780 + 0.45
hisH Bd1691 Imidazole glycerol phosphate synthase subunit hisHchromosome CDS1627986 615 + 0.442276
hutG Bd1812 formimidoylglutamasechromosome CDS1740124 960 - 0.504167
hutH Bd2753 chromosome CDS2673286 1536 - 0.523438
hutU Bd2751 chromosome CDS2671573 1659 - 0.531043
hyuA Bd1060 hydantoin utilization proteinchromosome CDS1005449 1353 - 0.532151
hyuB Bd1059 N-methylhydantoinase Bchromosome CDS1004052 1401 - 0.54247
ilvA Bd1056 threonine ammonia-lyasechromosome CDS1001306 1212 + 0.528053
ilvE Bd1736 branched-chain amino acid aminotransferasechromosome CDS1670684 975 + 0.50359
ilvE Bd1131 branched-chain amino acid aminotransferasechromosome CDS1072642 1068 + 0.521536
kamA Bd3344 lysine 2,3-aminomutasechromosome CDS3255632 1287 - 0.530692
leuB Bd1264 3-isopropylmalate dehydrogenasechromosome CDS1198682 1002 - 0.528942
livF Bd3389 branched-chain amino acid transport system ATP-binding proteinchromosome CDS3296223 714 + 0.511204
livG Bd3388 branched-chain amino acid transport systemchromosome CDS3295414 813 + 0.519065
livJ Bd3873 Branched-chain amino acid transport system substrate-binding proteinchromosome CDS3736436 1671 + 0.542789
lta Bd1811 low specificity L-threonine aldolase proteinchromosome CDS1739095 1026 - 0.525341
lysA Bd1777 chromosome CDS1708581 1176 + 0.494898
lysC Bd0528 aspartate kinasechromosome CDS492582 1188 - 0.518519
lysC Bd0134 aspartokinase III, lysine sensitivechromosome CDS118476 1383 + 0.503977
metB Bd3795 cystathionine gamma-lyasechromosome CDS3666847 1164 - 0.495704
mtbA Bd2344 mtbAchromosome CDS2243692 1365 - 0.517949
mvaB Bd3576 hydroxymethylglutaryl-CoA lyasechromosome CDS3477374 936 - 0.508547
oppA Bd1972 ABC-type dipeptide/oligopeptide/nickel transport systemschromosome CDS1883274 1464 - 0.507514
oppB Bd2710 oligopeptide ABC transporter, permease proteinchromosome CDS2631265 933 - 0.513398
oppC Bd2709 oligopeptide transport system permease proteinchromosome CDS2630444 825 - 0.513939
ordL Bd1837 oxidoreductasechromosome CDS1765495 1185 - 0.529958
pepA Bd3755 aminopeptidase A/Ichromosome CDS3628505 1503 + 0.491683
pepA Bd2554 cytosol aminopeptidasechromosome CDS2466820 1545 - 0.541748
pepC Bd1649 putative aminopeptidase Cchromosome CDS1582845 1167 - 0.53042
pepN Bd2521 chromosome CDS2427126 2622 + 0.514874
pepP Bd0202 aminopeptidase Pchromosome CDS187711 1323 + 0.507181
pepP Bd1372 aminopeptidase Pchromosome CDS1297429 1275 + 0.519216
pepT Bd2900 peptidase Tchromosome CDS2810386 1245 - 0.507631
pilI Bd0861 pilus biogenesis protein and ABC-type transporterchromosome CDS808743 759 + 0.505929
potB Bd1420 spermidine/putrescine transport system permease proteinchromosome CDS1341484 834 + 0.529976
potC Bd1421 spermidine/putrescine transport system permease proteinchromosome CDS1342310 834 + 0.535971
potD Bd1418 chromosome CDS1339533 1035 - 0.499517
potE Bd1912 amino acid transporterchromosome CDS1827663 1239 + 0.523002
proC Bd0465 chromosome CDS436152 828 - 0.516908
prs Bd2704 ribose-phosphate pyrophosphokinasechromosome CDS2625365 948 + 0.547468
ptrB Bd3175 chromosome CDS3092261 2094 + 0.499522
rbsB Bd2075 D-ribose periplasmic binding proteinchromosome CDS1981098 1803 - 0.483084
selD Bd2571 selenide, water dikinasechromosome CDS2484679 1053 - 0.521368
serA Bd2892 D-3-phosphoglycerate dehydrogenasechromosome CDS2802233 1206 - 0.510779
serA Bd1461 phosphoglycerate dehydrogenasechromosome CDS1382462 987 - 0.524823
slc39 Bd2019 solute carrier family 39 (iron-regulated transporter)chromosome CDS1929044 1323 + 0.51096
speA Bd0364 arginine decarboxylasechromosome CDS339740 1989 - 0.517345
speB Bd3436 agmatinasechromosome CDS3348079 948 - 0.517932
spl1 Bd1194 putative aminotransferasechromosome CDS1133081 1194 - 0.537688
sufS Bd1938 Cysteine desulphurase involved in Fe-S clsuter assemblychromosome CDS1850642 1206 + 0.52073
tcaB Bd0395 drug resistance transporter, Bcr/CflA familychromosome CDS372640 1191 - 0.529807
tetA Bd0461 multidrug resistance proteinchromosome CDS432856 1218 - 0.529557
tetA Bd0657 tetracycline-efflux transporterchromosome CDS607628 1104 - 0.536232
tyrdc Bd2647 Decarboxylase, putativechromosome CDS2571178 1836 - 0.514706
ycjI Bd3426 putative carboxypeptidasechromosome CDS3339044 696 + 0.543103
ycjI Bd3508 putative carboxypeptidasechromosome CDS3415577 906 - 0.520971
ydeR Bd3656 MFS permeasechromosome CDS3546676 1227 + 0.541972
yusX Bd3602 chromosome CDS3495093 1827 - 0.4948