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2024-05-20 04:05:25

Gene list

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COG category: Amino acid transport and metabolism
Organism: Bacteroides fragilis YCH46, YCH46

Number of genes found: 246

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Bacteroides fragilis YCH46, YCH46
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA BF0759 putative bicyclomycin resistance proteinchromosome CDS904334 1194 - 0.461474
NA BF4145 methenyltetrahydrofolate cyclohydrolasechromosome CDS4751559 630 - 0.501587
NA BF0240 putative acetylglutamate kinasechromosome CDS264422 786 + 0.440204
NA BF3417 hypothetical proteinchromosome CDS3904372 1389 + 0.413247
NA BF4483 3-dehydroquinate dehydratasechromosome CDS5144032 420 - 0.397619
NA BF3079 hypothetical proteinchromosome CDS3482489 660 + 0.384848
NA BF1834 putative 2-aminoethylphosphonate pyruvate aminotransferasechromosome CDS2159367 1101 + 0.470481
NA BF2490 aminotransferase involved in cobalamin biosynthesis CobCchromosome CDS2862490 1014 - 0.540434
NA BF0498 gamma-glutamyl phosphate reductasechromosome CDS574183 1248 - 0.510417
NA BF3053 imidazole glycerol phosphate synthase subunit hisFchromosome CDS3450886 753 - 0.5166
NA BF3336 glycine betaine transport ATP-binding proteinchromosome CDS3807888 1227 - 0.462918
NA BF2190 putative acetylhydrolasechromosome CDS2555023 1752 - 0.49258
NA BF2057 putative aspartate aminotransferasechromosome CDS2408801 1317 - 0.415338
NA BF0182 dihydrodipicolinate reductasechromosome CDS195044 729 - 0.454047
NA BF3049 diaminopimelate decarboxylasechromosome CDS3446732 1164 - 0.505155
NA BF2656 tryptophan synthase alpha chainchromosome CDS3056668 792 + 0.47096
NA BF3634 hypothetical proteinchromosome CDS4145698 168 + 0.410714
NA BF1706 probable N-acetylneuraminate lyasechromosome CDS1978557 918 + 0.399782
NA BF2290 putative macrolide efflux pumpchromosome CDS2661985 1212 - 0.390264
NA BF1979 putative ATPase involved in DNA repairchromosome CDS2316580 2838 - 0.312896
NA BF2404 dihydrodipicolinate synthasechromosome CDS2776758 894 + 0.423937
NA BF2654 indole-3-glycerol phosphate synthasechromosome CDS3055085 813 + 0.480935
NA BF2605 putative peptidasechromosome CDS2994688 2109 + 0.483167
NA BF3199 5-methyltetrahydrofolate-homocysteinemethyltrans ferasechromosome CDS3626992 2751 - 0.438023
NA BF0431 beta-lactamase induction signal transducerchromosome CDS504685 1299 - 0.444188
NA BF0087 serine acetyltransferasechromosome CDS96160 900 - 0.493333
NA BF2678 conserved hypothetical proteinchromosome CDS3078270 1530 - 0.490196
NA BF0083 conserved hypothetical proteinchromosome CDS90159 993 - 0.490433
NA BF0990 putative aminotransferasechromosome CDS1196226 1185 + 0.459072
NA BF4363 putative glycine cleavage system H proteinchromosome CDS4969109 381 + 0.472441
NA BF0269 aminotransferasechromosome CDS294869 1212 + 0.443894
NA BF1450 lactoylglutathione lyasechromosome CDS1694825 381 - 0.425197
NA BF0612 putative permeasechromosome CDS722107 951 + 0.50368
NA BF3545 O-acetylhomoserine (thiol)-lyasechromosome CDS4051964 1281 - 0.516003
NA BF4137 putative periplasmic proteinchromosome CDS4740719 930 - 0.484946
NA BF2164 putative sugar transporterchromosome CDS2527488 1167 + 0.455013
NA BFp0014 conserved hypothetical protein found in conjugate transposon TraKpBFY46 CDS12028 615 + 0.336585
NA BF3506 hypothetical proteinchromosome CDS4007766 600 + 0.415
NA BF1215 conserved hypothetical proteinchromosome CDS1446725 1194 - 0.432998
NA BF3364 aminopeptidase Cchromosome CDS3843228 1185 + 0.454852
NA BF2635 carbamyl phosphate synthetasechromosome CDS3029813 3231 - 0.518725
NA BF1708 major facilitator family transporterchromosome CDS1980698 1239 + 0.411622
NA BF1302 tripeptide aminopeptidasechromosome CDS1540477 1224 + 0.426471
NA BF0239 putative arginine decarboxylasechromosome CDS262402 1893 + 0.440571
NA BF0533 argininosuccinate synthasechromosome CDS609457 1206 - 0.455224
NA BF2580 putative carbamoylphosphate synthase large subunit short formchromosome CDS2964664 1272 - 0.316824
NA BF1308 conserved hypothetical proteinchromosome CDS1548672 654 + 0.432722
NA BF0372 acetylornithine deacetylasechromosome CDS429202 1062 - 0.479284
NA BF4517 putative membrane proteinchromosome CDS5183982 312 + 0.432692
NA BF3635 NADP-specific glutamate dehydrogenasechromosome CDS4146015 1338 + 0.467862
NA BF1830 conserved hypothetical proteinchromosome CDS2154906 1284 + 0.429907
NA BF3792 chorismate synthasechromosome CDS4321964 1077 + 0.460539
NA BF3389 pyruvate dehydrogenasechromosome CDS3876039 1740 + 0.485632
NA BF0078 conserved hypothetical proteinchromosome CDS86214 759 + 0.467721
NA BF2019 D-3-phosphoglycerate dehydrogenasechromosome CDS2370104 921 + 0.469055
NA BF2010 putative aminopeptidase Cchromosome CDS2359179 1398 + 0.501431
NA BF2651 anthranilate synthase component Ichromosome CDS3051872 1407 + 0.505331
NA BF2300 putative phosphoserine phosphatasechromosome CDS2673831 1224 - 0.440359
NA BF3066 putative 5-methyltetrahydrofolate-homocystein methyltransferasechromosome CDS3467688 684 - 0.44152
NA BF3446 3-isopropylmalate dehydratase small subunit LeuDchromosome CDS3939837 591 - 0.395939
NA BF3761 acetohydroxyacid synthase small subunitchromosome CDS4270472 561 - 0.402852
NA BF0455 putative glutaminasechromosome CDS536141 966 + 0.458592
NA BF3763 dihydroxy-acid dehydratasechromosome CDS4272799 1803 - 0.494731
NA BF3695 serine-pyruvate aminotransferasechromosome CDS4204251 1089 - 0.464646
NA BF1899 conserved hypothetical proteinchromosome CDS2235479 900 + 0.425556
NA BF4203 putative aminopeptidasechromosome CDS4797248 1779 + 0.449691
NA BF3576 amino acid carrier proteinchromosome CDS4087670 1380 + 0.452899
NA BF3793 putative succinyl-diaminopimelate desuccinylasechromosome CDS4323053 1365 + 0.443223
NA BF0266 hypothetical proteinchromosome CDS291983 747 + 0.42838
NA BF0390 conserved hypothetical proteinchromosome CDS459255 558 - 0.471326
NA BF2655 putative N-(5'-phosphoribosyl)anthranilate isomerasechromosome CDS3055988 621 + 0.470209
NA BF0499 glutamate 5-kinasechromosome CDS575443 1083 - 0.487535
NA BF0916 shikimate 5-dehydrogenasechromosome CDS1092631 744 - 0.393817
NA BF2025 glycine dehydrogenasechromosome CDS2375480 2850 - 0.508421
NA BF3944 putative phospho-2-dehydro-3-deoxyheptonate aldolasechromosome CDS4495771 1062 + 0.504708
NA BF1475 alanine dehydrogenasechromosome CDS1716253 1110 - 0.498198
NA BF3680 conserved hypothetical proteinchromosome CDS4189909 498 - 0.487952
NA BF2049 Na+/solute symporterchromosome CDS2403054 1458 - 0.44513
NA BF1413 putative permeasechromosome CDS1648941 1176 - 0.477891
NA BF3607 NADP-specific glutamate dehydrogenasechromosome CDS4115865 1335 + 0.480899
NA BF3430 cysteine synthase Achromosome CDS3919808 951 - 0.50999
NA BF3092 putative membrane transport proteinchromosome CDS3495258 1173 + 0.467178
NA BF1287 conserved hypothetical proteinchromosome CDS1524554 915 - 0.36612
NA BF3197 osmo-regulated proline transporterchromosome CDS3624543 1554 - 0.42278
NA BF0222 erythronate-4-phosphate dehydrogenasechromosome CDS243928 1047 - 0.446991
NA BF1303 putative aminomethyltransferasechromosome CDS1541734 1086 + 0.418969
NA BF1406 O-acetylhomoserine (thiol)-lyasechromosome CDS1641899 1287 + 0.492619
NA BF3918 putative polysaccharide polymerasechromosome CDS4465561 1401 - 0.319058
NA BF3142 conserved hypothetical proteinchromosome CDS3551595 585 + 0.471795
NA BF4576 cysteine synthase Achromosome CDS5258722 948 - 0.517932
NA BF2650 tryptophan synthase beta chainchromosome CDS3050565 1173 + 0.514067
NA BF2263 D-xylose-proton symporterchromosome CDS2635078 1449 + 0.486542
NA BF0966 peptidyl-dipeptidasechromosome CDS1164577 2058 - 0.455782
NA BF2723 spermidine/putrescine transport ATP-binding proteinchromosome CDS3124759 1413 - 0.475584
NA BF1133 conserved hypothetical proteinchromosome CDS1357360 2679 - 0.475924
NA BF2515 conserved hypothetical proteinchromosome CDS2893484 561 + 0.42246
NA BF4384 xylose permeasechromosome CDS5009537 1320 + 0.443182
NA BF2332 hypothetical proteinchromosome CDS2695442 432 + 0.483796
NA BF2240 putative para-aminobenzoate synthase component Ichromosome CDS2612963 597 + 0.360134
NA BF2623 hypothetical proteinchromosome CDS3015104 528 + 0.359848
NA BF2642 diaminopimelate epimerasechromosome CDS3042065 810 + 0.506173
NA BF3334 glycine betaine-binding protein precursorchromosome CDS3806193 855 - 0.460819
NA BF3201 conserved hypothetical proteinchromosome CDS3630224 543 - 0.421731
NA BF2382 conserved hypothetical proteinchromosome CDS2755248 1116 - 0.425627
NA BF2610 putative H+/peptide symporterchromosome CDS3000242 1659 - 0.455093
NA BF3945 prephenate dehydratasechromosome CDS4496848 774 + 0.4677
NA BF4138 putative periplasmic proteinchromosome CDS4741602 1374 - 0.472344
NA BF0991 O-acetylhomoserine sulfhydrylasechromosome CDS1197442 1236 + 0.461165
NA BF0920 conserved hypothetical proteinchromosome CDS1096402 681 + 0.421439
NA BF0610 threonine synthasechromosome CDS720387 1302 + 0.506912
NA BF3188 histidinol-phosphate aminotransferasechromosome CDS3615110 1038 - 0.432563
NA BF3055 imidazole glycerol phosphate synthase subunit hisHchromosome CDS3452499 591 - 0.472081
NA BF2504 conserved hypothetical proteinchromosome CDS2877743 735 - 0.432653
NA BF2274 conserved hypothetical proteinchromosome CDS2645935 1050 - 0.427619
NA BF0085 dipeptidyl peptidase IVchromosome CDS92447 2160 - 0.491667
NA BF3267 putative transmembrane transport proteinchromosome CDS3716944 1242 + 0.512882
NA BF0051 conserved hypothetical proteinchromosome CDS55401 1044 + 0.347701
NA BF1085 putative oxalate:formate antiporterchromosome CDS1307919 1389 + 0.441325
NA BF4360 Xaa-Pro aminopeptidasechromosome CDS4965254 1374 - 0.532751
NA BF3636 putative Xaa-Pro dipeptidasechromosome CDS4147523 1164 + 0.455326
NA BF2081 putative aminotransferase Bchromosome CDS2427863 1164 + 0.52921
NA BF4147 formiminotransferase-cyclodeaminasechromosome CDS4753483 903 - 0.502769
NA BF0512 argininosuccinate lyasechromosome CDS587541 1344 + 0.431548
NA BF2525 carboxynorspermidine decarboxylasechromosome CDS2904955 1140 - 0.524561
NA BF3448 2-isopropylmalate synthase LeuAchromosome CDS3941982 1497 - 0.43153
NA BF2785 serine acetyltransferasechromosome CDS3198945 561 + 0.342246
NA BF1859 probable urea transport proteinchromosome CDS2187537 807 + 0.392813
NA BF3298 putative transport proteinchromosome CDS3749287 1596 + 0.491855
NA BF3444 3-isopropylmalate dehydrogenase LeuBchromosome CDS3937255 1062 - 0.451977
NA BF0788 conserved hypothetical proteinchromosome CDS944515 1089 + 0.425161
NA BF4092 5,10-methylenetetrahydrofolate reductasechromosome CDS4680143 954 + 0.436059
NA BF0116 TraNchromosome CDS122008 987 - 0.544073
NA BF0532 N-acetyl-gamma-glutamyl-phosphate reductasechromosome CDS608492 969 - 0.443756
NA BF0961 putative histidinol-phosphatasechromosome CDS1160562 789 - 0.448669
NA BF3470 hypothetical proteinchromosome CDS3968190 402 + 0.320896
NA BF0885 hexuronate transporterchromosome CDS1057937 1494 - 0.441098
NA BF0790 conserved hypothetical proteinchromosome CDS946735 909 - 0.433443
NA BF0815 putative polysaccharide polymerasechromosome CDS967801 1098 + 0.320583
NA BF2249 glutamine synthetase Ichromosome CDS2621838 1506 + 0.427623
NA BF0789 putative ArgK protein with ATPase and kinase domainschromosome CDS945612 1092 + 0.446886
NA BF3758 ketol-acid reductoisomerasechromosome CDS4268001 1044 - 0.474138
NA BF3997 branched-chain amino acid aminotransferasechromosome CDS4568711 1020 - 0.478431
NA BF3989 conserved hypothetical proteinchromosome CDS4560178 708 + 0.439266
NA BF3687 putative transcriptional regulatorchromosome CDS4195430 738 + 0.384824
NA BF0607 L-asparaginase Ichromosome CDS715039 1050 - 0.493333
NA BF0444 aspartate-semialdehyde dehydrogenasechromosome CDS524362 1011 - 0.450049
NA BF3406 hypothetical proteinchromosome CDS3893285 579 - 0.374784
NA BF1290 putative zinc-type alcohol dehydrogenasechromosome CDS1526390 1041 + 0.480307
NA BF0368 putative transcriptional regulatorchromosome CDS420669 978 - 0.402863
NA BF4426 hypothetical proteinchromosome CDS5061044 468 + 0.440171
NA BF2212 putative outer membrane proteinchromosome CDS2579482 1380 - 0.426812
NA BF3762 acetolactate synthase large subunitchromosome CDS4271046 1698 - 0.493522
NA BF4144 histidine ammonia-lyasechromosome CDS4750066 1497 - 0.485638
NA BF3940 putative N-acetylneuraminate lyasechromosome CDS4491440 909 - 0.429043
NA BF4213 aspartate ammonia-lyasechromosome CDS4812214 1434 - 0.471409
NA BF3547 putative homocysteine S-methyltransferasechromosome CDS4054582 957 + 0.532915
NA BF0494 ornithine carbamoyltransferasechromosome CDS570900 957 - 0.489028
NA BF3050 aspartokinasechromosome CDS3448052 1320 - 0.475
NA BF2721 putrescine transport system permease protein PotIchromosome CDS3123162 789 - 0.485425
NA BF2643 aspartate aminotransferasechromosome CDS3042927 1233 + 0.507705
NA BF2239 putative para-aminobenzoate synthase component Ichromosome CDS2611996 984 + 0.363821
NA BF0608 aspartokinase/homoserine dehydrogenasechromosome CDS716582 2436 + 0.495895
NA BF2652 anthranilate synthase component IIchromosome CDS3053337 681 + 0.481645
NA BF2292 putative permeasechromosome CDS2664494 1389 - 0.401008
NA BF0530 pyrroline-5-carboxylate reductasechromosome CDS606472 774 - 0.457364
NA BF2658 L-asparaginase Ichromosome CDS3057707 1047 + 0.469914
NA BF2653 anthranilate phosphoribosyltransferasechromosome CDS3054064 996 + 0.517068
NA BF2745 putative cysteine proteaseschromosome CDS3157617 1341 - 0.526473
NA BF3578 conserved hypothetical proteinchromosome CDS4089922 2100 + 0.442381
NA BF0252 FucRchromosome CDS273848 981 + 0.378186
NA BF3942 prephenate dehydratasechromosome CDS4493744 846 + 0.456265
NA BF3815 aspartate-ammonia ligasechromosome CDS4350654 1038 + 0.464355
NA BF3445 2-isopropylmalate synthase LeuAchromosome CDS3938329 1530 - 0.445098
NA BF2248 putative membrane efflux proteinchromosome CDS2620405 1215 - 0.406584
NA BF1732 sialate O-acetylesterasechromosome CDS2026573 2073 + 0.432706
NA BF3187 histidine biosynthesis bifunctional protein HisBchromosome CDS3613980 1125 - 0.452444
NA BF0926 putative permeasechromosome CDS1103312 900 + 0.413333
NA BF1265 L-serine dehydratasechromosome CDS1501271 1209 - 0.494624
NA BF0679 cationic amino acid transporterchromosome CDS804008 1668 - 0.505995
NA BF2204 serine hydroxymethyltransferasechromosome CDS2573053 1281 - 0.430913
NA BF2231 ribose-phosphate pyrophosphokinasechromosome CDS2602130 918 - 0.448802
NA BF3052 phosphoribosyl-ATP pyrophosphohydrolasechromosome CDS3450086 612 - 0.47549
NA BF2722 putrescine transport system permease protein PotHchromosome CDS3123944 798 - 0.4599
NA BF3447 3-isopropylmalate dehydratase large subunit LeuCchromosome CDS3940540 1395 - 0.464516
NA BF3181 peptidyl-dipeptidasechromosome CDS3603287 2112 - 0.445076
NA BF0531 acetylornithine aminotransferasechromosome CDS607358 1125 - 0.459556
NA BF4245 major facilitator family transporterchromosome CDS4840629 1239 + 0.503632
NA BF3752 3-oxo-5-alpha-steroid 4-dehydrogenasechromosome CDS4257684 762 - 0.446194
NA BF2720 spermidine/putrescine ABC transporterchromosome CDS3121659 1335 - 0.485393
NA BF0454 glutamate decarboxylasechromosome CDS534683 1443 + 0.445599
NA BF1731 sialate O-acetylesterasechromosome CDS2025914 663 + 0.371041
NA BF0823 putative lactoylglutathione lyasechromosome CDS974379 402 + 0.353234
NA BF1477 putative secreted peptidasechromosome CDS1719252 1638 + 0.4884
NA BF2674 conserved hypothetical proteinchromosome CDS3072589 978 - 0.497955
NA BF0437 sodium/iodide co-transporterchromosome CDS514805 1458 - 0.399177
NA BF0780 aminoacyl-histidine dipeptidasechromosome CDS929787 1458 + 0.423868
NA BF1027 xanthosine permeasechromosome CDS1233555 1260 - 0.439683
NA BF0576 aspartokinasechromosome CDS668761 1365 - 0.465934
NA BF3335 glycine betaine/L-proline transport system permeasechromosome CDS3807067 825 - 0.487273
NA BF2636 glutamine-hydrolyzing carbamoyl phosphate synthetase IIIchromosome CDS3033206 1077 - 0.510678
NA BF0674 aminopeptidase Nchromosome CDS795873 2514 + 0.512331
NA BF3189 histidinol dehydrogenasechromosome CDS3616144 1287 - 0.472416
NA BF0595 aspartate aminotransferasechromosome CDS699515 1194 + 0.468174
NA BF1588 aspartate aminotransferasechromosome CDS1843656 1200 + 0.4825
NA BF1915 probable transport proteinchromosome CDS2249505 1239 - 0.405973
NA BF4215 L-asparaginase II precursorchromosome CDS4815322 1059 + 0.481586
NA BF0492 conserved hypothetical proteinchromosome CDS569706 696 + 0.489943
NA BF2838 hypothetical proteinchromosome CDS3246874 1149 + 0.440383
NA BF0539 glutamate/gamma-aminobutyrate anti-porterchromosome CDS615987 1599 - 0.467167
NA BF1517 aspartate decarboxylase AsdAchromosome CDS1766821 1647 - 0.481481
NA BF4356 conserved hypothetical proteinchromosome CDS4960261 1587 - 0.545054
NA BF3694 putative transport proteinchromosome CDS4202680 1407 + 0.500355
NA BF3943 aminotransferasechromosome CDS4494564 1185 + 0.495359
NA BF3054 phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerasechromosome CDS3451740 720 - 0.465278
NA BF2639 glutamine-hydrolyzing asparagine synthetase Bchromosome CDS3037325 1677 + 0.522958
NA BF4035 glutamine-dependent carbamyl phosphate synthetasechromosome CDS4609002 3222 - 0.455928
NA BF0737 3-phosphoshikimate 1-carboxyvinyltransferasechromosome CDS871805 1233 - 0.489862
NA BF4357 conserved hypothetical proteinchromosome CDS4961865 1938 - 0.53354
NA BF0167 conserved hypothetical proteinchromosome CDS179970 864 - 0.483796
NA BF2018 phosphoserine aminotransferasechromosome CDS2368923 1068 + 0.483146
NA BF1331 putative signal transducerchromosome CDS1574515 1269 + 0.455477
NA BF1727 putative outer membrane protein probably involved in nutrient bindingchromosome CDS2019916 2016 + 0.429067
NA BF4529 arabinose-proton symporterchromosome CDS5207553 1374 - 0.458515
NA BF0938 xylose/H+ symporterchromosome CDS1121318 1380 - 0.476087
NA BF3131 5-methyltetrahydrofolate-homocysteinemethyltrans ferasechromosome CDS3544448 939 + 0.477103
NA BF3239 aminoacyl-histidine dipeptidasechromosome CDS3673443 1467 + 0.480573
NA BF3087 putative integral membrane proteinchromosome CDS3490611 933 - 0.473741
NA BF1668 sulfate adenylyltransferase subunit 2chromosome CDS1934424 912 + 0.448465
NA BF2387 conserved hypothetical proteinchromosome CDS2758857 384 + 0.377604
NA BF4431 hypothetical proteinchromosome CDS5069905 3186 - 0.420276
NA BF0452 putative sugar transporterchromosome CDS533186 1236 - 0.474919
NA BF3190 ATP phosphoribosyltransferasechromosome CDS3617466 852 - 0.43662
NA BF0235 shikimate kinasechromosome CDS256298 540 + 0.451852
NA BF0743 3-dehydroquinate synthasechromosome CDS880060 1062 - 0.456686
NA BF4148 putative urocanate hydratasechromosome CDS4754454 1986 - 0.507049
NA BF3288 lactoylglutathione lyase and related proteinchromosome CDS3737763 405 + 0.449383
NA BF0975 conserved hypothetical proteinchromosome CDS1179427 1119 - 0.442359
NA BF3496 putative outer membrane protein probably involved in nutrient bindingchromosome CDS3994272 1866 - 0.460343
NA BF1643 glutamine ABC transporter glutamine-binding proteinchromosome CDS1908477 825 - 0.488485
NA BF0598 homoserine O-succinyltransferasechromosome CDS703986 918 + 0.457516
NA BF3309 sugar transporterchromosome CDS3766432 1317 + 0.536826
NA BF3737 conserved hypothetical proteinchromosome CDS4244888 1281 + 0.47619
NA BF3935 putative major facilitator family transporterchromosome CDS4482464 1236 - 0.450647
NA BF1412 conserved hypothetical proteinchromosome CDS1648480 429 - 0.438228
NA BF3384 low-specificity L-threonine aldolasechromosome CDS3872873 1014 - 0.489152
NA BF1583 putative histidinol-phosphatasechromosome CDS1838458 834 + 0.48801