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2024-05-07 18:07:18

Gene list

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COG category: Energy production and conversion
Organism: Thiomicrospira denitrificans ATCC 33889, ATCC 33889

Number of genes found: 144

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Thiomicrospira denitrificans ATCC 33889, ATCC 33889
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Tmden_1493 4Fe-4S ferredoxin, iron-sulfur bindingchromosome CDS1567852 1110 - 0.361261
NA Tmden_0096 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovaleratechromosome CDS102533 558 + 0.356631
NA Tmden_1816 Proton-translocating NADH-quinone oxidoreductase, chain Mchromosome CDS1897450 1554 - 0.370656
NA Tmden_1920 Cytochrome b/b6-likechromosome CDS2001915 1215 - 0.361317
NA Tmden_0741 Cytochrome c, class Ichromosome CDS765562 540 + 0.381481
NA Tmden_1437 Nickel-dependent hydrogenase, large subunitchromosome CDS1504001 1254 - 0.338118
NA Tmden_1584 hypothetical proteinchromosome CDS1659042 1788 - 0.360179
NA Tmden_1583 hypothetical proteinchromosome CDS1658665 381 - 0.317585
NA Tmden_1435 Nickel-dependent hydrogenase, large subunitchromosome CDS1500993 1734 - 0.373126
NA Tmden_0501 conserved hypothetical thioredoxinchromosome CDS505253 495 - 0.29697
NA Tmden_1052 4Fe-4S ferredoxin, iron-sulfur bindingchromosome CDS1117673 336 + 0.386905
NA Tmden_0824 4Fe-4S ferredoxin, iron-sulfur bindingchromosome CDS854161 1674 - 0.351852
NA Tmden_0578 cytochrome c-553chromosome CDS586490 285 - 0.396491
NA Tmden_0342 thioredoxin-likechromosome CDS340518 321 + 0.330218
NA Tmden_1049 Fumarate hydratase, class IIchromosome CDS1114008 1392 + 0.37931
NA Tmden_0102 Molybdopterin oxidoreductase Fe4S4 regionchromosome CDS107403 177 - 0.38983
NA Tmden_1696 Phosphoenolpyruvate carboxykinase (ATP)chromosome CDS1776356 1587 - 0.36862
NA Tmden_1817 NADH-plastoquinone oxidoreductase, chain 5chromosome CDS1899007 1923 - 0.375975
NA Tmden_0084 Cytochrome c, class Ichromosome CDS90893 924 + 0.361472
NA Tmden_0263 hypothetical proteinchromosome CDS276674 771 + 0.385214
NA Tmden_1867 Thioredoxinchromosome CDS1949003 321 + 0.34891
NA Tmden_1330 Glycerol-3-phosphate dehydrogenase (NAD(P)+)chromosome CDS1402740 891 - 0.379349
NA Tmden_1048 Malate dehydrogenase, NAD-dependentchromosome CDS1113044 960 + 0.3875
NA Tmden_1231 Glycerophosphoryl diester phosphodiesterasechromosome CDS1297864 774 - 0.342377
NA Tmden_1821 Respiratory-chain NADH dehydrogenase, subunit 1chromosome CDS1902467 987 - 0.388045
NA Tmden_1259 Biotin/lipoyl attachmentchromosome CDS1328287 1812 - 0.380243
NA Tmden_1514 Periplasmic nitrate reductase, large subunitchromosome CDS1588404 2823 + 0.393553
NA Tmden_1040 Aconitate hydratasechromosome CDS1097022 2547 + 0.399686
NA Tmden_0148 hypothetical proteinchromosome CDS152577 546 + 0.386447
NA Tmden_1899 Aldehyde dehydrogenasechromosome CDS1981609 1416 - 0.390537
NA Tmden_1823 Ferredoxinchromosome CDS1905943 2253 - 0.376831
NA Tmden_1434 Nickel-dependent hydrogenase b-type cytochrome subunitchromosome CDS1500281 732 - 0.344262
NA Tmden_0429 ATP synthase F0, C subunitchromosome CDS431999 315 + 0.406349
NA Tmden_0329 oxidoreductases (related to aryl-alcohol dehydrogenases)-likechromosome CDS329976 1233 + 0.330089
NA Tmden_0082 Cytochrome C oxidase, mono-heme subunit/FixOchromosome CDS89978 693 + 0.378066
NA Tmden_1436 Ni-Fe hydrogenase, small subunitchromosome CDS1502736 1152 - 0.399306
NA Tmden_1050 Succinyl-CoA synthetase, beta subunitchromosome CDS1115421 1176 + 0.388605
NA Tmden_1158 Nitroreductasechromosome CDS1214033 630 - 0.334921
NA Tmden_1030 Succinate dehydrogenasechromosome CDS1084636 1713 - 0.38704
NA Tmden_1402 H+-transporting two-sector ATPase, delta/epsilon subunitchromosome CDS1469155 393 - 0.386768
NA Tmden_1329 hypothetical proteinchromosome CDS1402363 372 + 0.360215
NA Tmden_1444 hypothetical proteinchromosome CDS1512285 393 - 0.330789
NA Tmden_0042 Radical SAMchromosome CDS49359 1509 - 0.343936
NA Tmden_1218 FAD linked oxidase-likechromosome CDS1284570 1293 + 0.367363
NA Tmden_1581 Beta-lactamase-likechromosome CDS1657176 1206 - 0.329187
NA Tmden_0266 hypothetical proteinchromosome CDS280816 378 + 0.283069
NA Tmden_1408 H+-transporting two-sector ATPase, B/B' subunitchromosome CDS1474460 423 - 0.335697
NA Tmden_1301 4Fe-4S ferredoxin, iron-sulfur bindingchromosome CDS1374035 741 + 0.37112
NA Tmden_1298 Nitrous-oxide reductasechromosome CDS1369244 2598 + 0.359892
NA Tmden_1518 4Fe-4S ferredoxin, iron-sulfur bindingchromosome CDS1593606 483 + 0.341615
NA Tmden_0633 Radical SAMchromosome CDS644445 933 - 0.326902
NA Tmden_1302 conserved hypothetical proteinchromosome CDS1374786 612 + 0.308824
NA Tmden_1776 4Fe-4S ferredoxin, iron-sulfur bindingchromosome CDS1858495 285 - 0.42807
NA Tmden_0607 conserved hypothetical proteinchromosome CDS615139 1284 + 0.36215
NA Tmden_1993 Sodium:dicarboxylate symporterchromosome CDS2074536 1218 - 0.360427
NA Tmden_2099 Thioredoxinchromosome CDS2195149 423 + 0.352246
NA Tmden_1051 Succinyl-CoA ligase, alpha subunitchromosome CDS1116610 873 + 0.41008
NA Tmden_1438 NADH ubiquinone oxidoreductase, 20 kDa subunitchromosome CDS1505247 882 - 0.343537
NA Tmden_1900 hypothetical proteinchromosome CDS1983286 393 + 0.338422
NA Tmden_2030 4Fe-4S ferredoxin, iron-sulfur bindingchromosome CDS2113224 1434 - 0.340307
NA Tmden_1917 hypothetical proteinchromosome CDS1998655 1272 - 0.359277
NA Tmden_1405 ATP synthase F1, alpha subunitchromosome CDS1471867 1518 - 0.395257
NA Tmden_0038 Succinate dehydrogenase/fumarate reductase iron-sulfur proteinchromosome CDS46600 705 + 0.365957
NA Tmden_1339 H+-transporting two-sector ATPase, A subunitchromosome CDS1411019 675 - 0.367407
NA Tmden_0228 hypothetical proteinchromosome CDS238230 414 + 0.36715
NA Tmden_0103 hypothetical proteinchromosome CDS107741 594 + 0.358586
NA Tmden_1101 3-isopropylmalate dehydrogenasechromosome CDS1158152 1068 - 0.396067
NA Tmden_1304 Ferredoxin-type protein, NapH/MauN familychromosome CDS1375915 906 + 0.333333
NA Tmden_1029 Succinate dehydrogenase/fumarate reductase iron-sulfur proteinchromosome CDS1083649 978 - 0.369121
NA Tmden_0570 CoA_binding Ligase_CoA Citrate_syntchromosome CDS572262 1335 + 0.3603
NA Tmden_1155 Inorganic diphosphatasechromosome CDS1210904 918 - 0.359477
NA Tmden_1055 Pyruvate ferredoxin/flavodoxin oxidoreductasechromosome CDS1120012 555 + 0.354955
NA Tmden_1406 H+-transporting two-sector ATPase, delta (OSCP) subunitchromosome CDS1473408 534 - 0.29588
NA Tmden_0519 Nitroreductasechromosome CDS518921 678 - 0.374631
NA Tmden_0844 putative lipoprotein thiredoxinchromosome CDS873766 558 - 0.318996
NA Tmden_1255 Molybdopterin oxidoreductasechromosome CDS1323315 1734 - 0.349481
NA Tmden_1828 NADH dehydrogenase (ubiquinone), 20 kDa subunitchromosome CDS1912623 510 - 0.4
NA Tmden_1308 conserved hypothetical proteinchromosome CDS1378749 471 + 0.335456
NA Tmden_1827 NADH (or F420H2) dehydrogenase, subunit Cchromosome CDS1911817 807 - 0.366791
NA Tmden_0904 Cytochrome c, class Ichromosome CDS937313 363 - 0.349862
NA Tmden_0820 Molybdopterin oxidoreductasechromosome CDS850305 2235 - 0.387025
NA Tmden_1552 conserved hypothetical proteinchromosome CDS1623691 699 + 0.366237
NA Tmden_0662 4Fe-4S ferredoxin, iron-sulfur bindingchromosome CDS677546 255 - 0.380392
NA Tmden_0098 Pyruvate flavodoxin/ferredoxin oxidoreductase-likechromosome CDS103496 1224 + 0.392157
NA Tmden_1983 conserved hypothetical proteinchromosome CDS2064057 687 + 0.390102
NA Tmden_1374 Rhodanese-likechromosome CDS1444705 738 + 0.371274
NA Tmden_1303 conserved hypothetical proteinchromosome CDS1375400 501 + 0.357285
NA Tmden_0817 Formate dehydrogenase, subunit FdhDchromosome CDS847911 831 - 0.322503
NA Tmden_0097 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovaleratechromosome CDS103101 396 + 0.373737
NA Tmden_1054 Thiamine pyrophosphate enzyme, C-terminal TPP-bindingchromosome CDS1119143 858 + 0.339161
NA Tmden_0056 Acetate kinasechromosome CDS62279 1170 + 0.35641
NA Tmden_1258 Oxaloacetate decarboxylasechromosome CDS1326951 1332 - 0.373123
NA Tmden_1770 Nitrous-oxide reductasechromosome CDS1852688 2595 + 0.364162
NA Tmden_1750 conserved hypothetical proteinchromosome CDS1834202 660 - 0.356061
NA Tmden_1985 Nitrite reductase (NO-forming)chromosome CDS2066434 1641 + 0.382084
NA Tmden_0166 hypothetical proteinchromosome CDS167766 405 - 0.318519
NA Tmden_1921 Ubiquinol-cytochrome c reductase, iron-sulfur subunitchromosome CDS2003142 498 - 0.427711
NA Tmden_1919 ubiquinol cytochrome c oxidoreductase, cytochrome C1 subunitchromosome CDS2000957 948 - 0.379747
NA Tmden_0333 ferredoxin, 2Fe-2Schromosome CDS333557 375 + 0.402667
NA Tmden_1829 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3chromosome CDS1913114 390 - 0.348718
NA Tmden_1047 Isocitrate dehydrogenase (NADP+)chromosome CDS1110707 2190 + 0.36895
NA Tmden_1820 NADH-quinone oxidoreductase, chain Ichromosome CDS1901822 636 - 0.371069
NA Tmden_0037 Succinate dehydrogenasechromosome CDS45009 1602 + 0.378901
NA Tmden_1404 Sodium-transporting two-sector ATPasechromosome CDS1470970 888 - 0.331081
NA Tmden_1213 FAD-dependent pyridine nucleotide-disulphide oxidoreductasechromosome CDS1280399 1197 - 0.362573
NA Tmden_1582 Rubredoxin-type Fe(Cys)4 proteinchromosome CDS1658390 165 - 0.375758
NA Tmden_1407 H+-transporting two-sector ATPase, B/B' subunitchromosome CDS1473941 510 - 0.347059
NA Tmden_0257 hypothetical proteinchromosome CDS272280 1095 + 0.315982
NA Tmden_1769 hypothetical proteinchromosome CDS1851369 1299 + 0.365666
NA Tmden_1515 MauM/NapG ferredoxin-type proteinchromosome CDS1591246 825 + 0.370909
NA Tmden_1279 Aldo/keto reductasechromosome CDS1348784 1020 - 0.363725
NA Tmden_1815 Proton-translocating NADH-quinone oxidoreductase, chain Nchromosome CDS1895942 1509 - 0.362492
NA Tmden_0498 4Fe-4S ferredoxin, iron-sulfur bindingchromosome CDS500272 639 + 0.378717
NA Tmden_0898 Protein-disulfide reductasechromosome CDS929082 1770 + 0.371751
NA Tmden_1818 NADH-ubiquinone oxidoreductase, chain 4Lchromosome CDS1900933 309 - 0.33657
NA Tmden_1517 periplasmic nitrate reductasechromosome CDS1592896 711 + 0.35865
NA Tmden_1819 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6chromosome CDS1901238 573 - 0.390925
NA Tmden_2100 Citrate synthase Ichromosome CDS2195606 1281 + 0.363778
NA Tmden_1804 Cytochrome B561chromosome CDS1885007 585 - 0.316239
NA Tmden_0372 FAD linked oxidase-likechromosome CDS372031 1386 + 0.373016
NA Tmden_0571 ATP-citrate lyase/succinyl-CoA ligasechromosome CDS573606 1815 + 0.365289
NA Tmden_1403 ATP synthase F1, beta subunitchromosome CDS1469564 1407 - 0.392324
NA Tmden_2059 Cytochrome c, class Ichromosome CDS2149905 1149 - 0.389034
NA Tmden_0099 Thiamine pyrophosphate enzyme, C-terminal TPP-bindingchromosome CDS104730 957 + 0.37931
NA Tmden_1433 Peptidase M52, hydrogenase expression/formation proteinchromosome CDS1499568 546 - 0.358974
NA Tmden_0104 Cytochrome c oxidase, subunit Ichromosome CDS108331 1638 + 0.418193
NA Tmden_0821 Twin-arginine translocation pathway signalchromosome CDS852561 543 - 0.379374
NA Tmden_0739 Rubrerythrinchromosome CDS762850 498 + 0.393574
NA Tmden_1260 Sodium pump decarboxylase, gamma subunitchromosome CDS1330107 240 - 0.345833
NA Tmden_1791 Na+/H+ antiporter NhaCchromosome CDS1873323 1182 - 0.365482
NA Tmden_0260 hypothetical proteinchromosome CDS275274 525 + 0.346667
NA Tmden_0274 4Fe-4S ferredoxin, iron-sulfur bindingchromosome CDS290668 981 - 0.393476
NA Tmden_1317 conserved hypothetical proteinchromosome CDS1386842 1095 - 0.330594
NA Tmden_0034 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-bindingchromosome CDS41083 936 + 0.362179
NA Tmden_1516 Ferredoxin-type protein, NapH/MauN familychromosome CDS1592067 828 + 0.363527
NA Tmden_0990 hypothetical proteinchromosome CDS1042136 387 - 0.369509
NA Tmden_0818 hypothetical proteinchromosome CDS848748 948 - 0.35654
NA Tmden_1311 hypothetical proteinchromosome CDS1381506 1125 - 0.336889
NA Tmden_1028 Protein of unknown function DUF224, cysteine-rich regionchromosome CDS1082756 882 - 0.37415
NA Tmden_0819 4Fe-4S ferredoxin, iron-sulfur bindingchromosome CDS849705 591 - 0.394247
NA Tmden_1826 NADH dehydrogenase I, D subunitchromosome CDS1910564 1239 - 0.383374
NA Tmden_1053 Pyruvate flavodoxin/ferredoxin oxidoreductase-likechromosome CDS1118008 1134 + 0.380952
NA Tmden_1822 Ferredoxinchromosome CDS1903457 2487 - 0.368717
NA Tmden_0500 Twin-arginine translocation pathway signalchromosome CDS501822 3384 + 0.390662