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2024-05-02 22:32:13

Gene list

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COG category: Energy production and conversion
Organism: Photorhabdus luminescens subsp. laumondii TTO1, TTO1

Number of genes found: 182

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Photorhabdus luminescens subsp. laumondii TTO1, TTO1
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA plu0479 chromosome CDS519787 486 - 0.397119
NA plu4092 chromosome CDS4779783 1260 - 0.377778
NA plu0932 chromosome CDS1073495 1044 + 0.286398
NA plu2626 chromosome CDS3071412 3060 - 0.45817
NA plu2342 chromosome CDS2759350 1017 - 0.431662
NA plu3138 chromosome CDS3698711 1212 - 0.385314
NA plu3335 chromosome CDS3964216 261 + 0.390805
NA plu4586 chromosome CDS5352267 1182 + 0.451777
NA plu3815 chromosome CDS4482410 1065 + 0.451643
NA plu1883 chromosome CDS2244061 1998 + 0.474474
NA plu3054 chromosome CDS3560007 267 + 0.441948
NA plu0950 chromosome CDS1092562 768 + 0.509115
NA plu1743 chromosome CDS2078966 1314 - 0.453577
NA plu1899 chromosome CDS2262599 444 + 0.470721
NA plu2163 chromosome CDS2548765 948 + 0.424051
NA plu4673 chromosome CDS5450411 357 + 0.439776
NA plu1866 chromosome CDS2211178 1332 + 0.421922
NA plu1763 chromosome CDS2104072 1116 - 0.396953
NA plu3928 chromosome CDS4608290 2907 + 0.374613
NA plu0667 chromosome CDS766237 450 + 0.444444
NA plu1106 chromosome CDS1271090 1149 + 0.466493
NA plu1785 chromosome CDS2129027 279 + 0.415771
NA plu1563 chromosome CDS1868761 1152 + 0.431424
NA plu3306 chromosome CDS3920689 1392 - 0.443966
NA plu2262 chromosome CDS2657678 3447 - 0.427328
NA plu0142 chromosome CDS148959 1470 + 0.516327
NA plu3801 chromosome CDS4466550 1005 + 0.350249
NA plu1794 chromosome CDS2139358 969 + 0.399381
NA plu2043 chromosome CDS2413140 1338 - 0.470105
NA plu1168 chromosome CDS1353190 273 - 0.399267
NA plu2789 chromosome CDS3309647 429 + 0.32634
NA plu2525 chromosome CDS2975249 684 - 0.49269
NA plu0935 chromosome CDS1076423 1134 + 0.301587
NA plu2246 chromosome CDS2640912 1584 + 0.489899
NA plu1272 chromosome CDS1480005 2643 - 0.446841
NA plu1322 chromosome CDS1536760 1668 + 0.417866
NA plu1762 chromosome CDS2102496 1299 - 0.443418
NA plu1526 chromosome CDS1828404 1113 - 0.437556
NA plu2939 chromosome CDS3451110 438 + 0.429224
NA plu2236 chromosome CDS2630027 1236 - 0.447411
NA plu1351 chromosome CDS1617572 348 - 0.436782
NA plu2795 chromosome CDS3318227 1953 + 0.443932
NA plu2042 chromosome CDS2412143 1008 - 0.481151
NA plu3741 chromosome CDS4412848 1593 + 0.463905
NA plu0145 chromosome CDS152086 1065 + 0.51831
NA plu1234 chromosome CDS1426574 897 - 0.42252
NA plu1975 chromosome CDS2348123 1056 + 0.483902
NA plu0666 chromosome CDS765264 603 - 0.3267
NA plu2094 chromosome CDS2481898 555 + 0.409009
NA plu3732 chromosome CDS4399346 1455 - 0.461168
NA plu1437 chromosome CDS1728044 1623 + 0.436229
NA plu4261 chromosome CDS4985678 960 + 0.421875
NA plu3364 chromosome CDS3991708 1419 - 0.310782
NA plu4072 chromosome CDS4757656 978 + 0.464213
NA plu1002 chromosome CDS1187514 1185 + 0.397468
NA plu2552 chromosome CDS2996018 552 - 0.478261
NA plu2349 chromosome CDS2766816 1431 - 0.538085
NA plu4371 chromosome CDS5102755 1089 + 0.449036
NA plu1760 chromosome CDS2099977 1296 - 0.439043
NA plu1806 chromosome CDS2154077 1512 - 0.457672
aceA plu4395 isocitrate lyase (isocitrase) (isocitratase) (ICL)chromosome CDS5134218 1308 - 0.461009
aceB plu4396 malate synthase A (MSA)chromosome CDS5135622 1599 - 0.445278
aceE plu3623 pyruvate dehydrogenase E1 componentchromosome CDS4272925 2664 - 0.463964
aceF plu3622 dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (E2)chromosome CDS4271312 1599 - 0.493433
ackA plu3095 acetate kinase (acetokinase)chromosome CDS3611182 1203 + 0.481297
acnA plu2432 Aconitate hydratase 1 (citrate hydro-lyase 1) (aconitase 1)chromosome CDS2852755 2676 - 0.454036
acnB plu3619 aconitate hydratase 2 (citrate hydro-lyase 2) (aconitase 2)chromosome CDS4266608 2598 - 0.476135
adhC plu4332 alcohol dehydrogenase class III (glutathione-dependent formaldehyde dehydrogenase) (FDH) (FALDH)chromosome CDS5060497 1110 + 0.506306
adhE plu2496 Aldehyde-alcohol dehydrogenase [includes: alcohol dehydrogenase (ADH) and acetaldehyde dehydrogenase [acetylating] (ACDH); pyruvate-formate-lyase deacchromosome CDS2937962 2634 + 0.457859
aldB plu3739 Aldehyde dehydrogenase B (Lactaldehyde dehydrogenase)chromosome CDS4409211 1485 + 0.449158
astD plu3108 succinylglutamic semialdehyde dehydrogenasechromosome CDS3628981 1476 - 0.503388
atpA plu0042 ATP synthase alpha chainchromosome CDS37199 1542 - 0.462387
atpB plu0046 ATP synthase A chain (Protein 6)chromosome CDS40123 825 - 0.429091
atpC plu0039 ATP synthase epsilon chain (ATP synthase F1 sector epsilon subunit)chromosome CDS34416 423 - 0.453901
atpD plu0040 ATP synthase beta chainchromosome CDS34860 1383 - 0.472162
atpE plu0045 ATP synthase C chain (Lipid-binding protein) (Dicyclohexylcarbodiimide-binding protein)chromosome CDS39830 240 - 0.508333
atpF plu0044 ATP synthase B chainchromosome CDS39301 471 - 0.471338
atpG plu0041 ATP synthase gamma chainchromosome CDS36277 864 - 0.476852
atpH plu0043 ATP synthase delta chainchromosome CDS38755 534 - 0.441948
atpI plu0047 ATP synthase protein Ichromosome CDS40978 378 - 0.420635
cpmE plu0186 CpmE protein involved in carbapenem biosynthesischromosome CDS196776 255 + 0.294118
crtY plu4341 chromosome CDS5068951 1176 + 0.47619
cydA plu1449 Cytochrome D ubiquinol oxidase subunit I (Cytochrome BD-I oxidase subunit I)chromosome CDS1741045 1569 + 0.462715
cydB plu1450 Cytochrome D ubiquinol oxidase subunit II (Cytochrome BD-I oxidase subunit II)chromosome CDS1742628 1140 + 0.465789
cydC plu1597 Transport ATP-binding protein CydCchromosome CDS1903740 1749 - 0.474557
cydD plu1598 Transport ATP-binding protein CydDchromosome CDS1905491 1770 - 0.472316
cyoA plu3875 ubiquinol oxidase polypeptide II precursor (cytochrome O subunit 2) (oxidase BO(3) subunit 2) (cytochrome O ubiquinol oxidase subunit 2) (ubiquinol oxchromosome CDS4551982 936 + 0.436966
cyoB plu3876 ubiquinol oxidase polypeptide I (cytochrome O subunit 1) (oxidase BO(3) subunit 1) (cytochrome O ubiquinol oxidase subunit 1) (ubiquinol oxidase chainchromosome CDS4552922 1992 + 0.480924
cyoC plu3877 cytochrome O ubiquinol oxidase subunit III (ubiquinol oxidase chain C)chromosome CDS4554903 615 + 0.466667
cyoD plu3878 cytochrome O ubiquinol oxidase protein cyoD (ubiquinol oxidase chain D)chromosome CDS4555517 333 + 0.423423
dctA plu3205 C4-dicarboxylate transport proteinchromosome CDS3772184 1254 - 0.377193
dld plu2848 D-lactate dehydrogenasechromosome CDS3379035 1716 - 0.437063
dsbA plu0381 Disulfide interchange protein DsbA precursorchromosome CDS410589 624 + 0.427885
dsbD plu4139 thiol:disulfide interchange protein dsbD precursor (C-type cytochrome biogenesis protein cycZ) (inner membrane copper tolerance protein)chromosome CDS4828928 1728 + 0.451389
fdhD plu4885 FdhD proteinchromosome CDS5656325 831 - 0.441637
fdoH plu4888 formate dehydrogenase-O, iron-sulfur subunit (formate dehydrogenase-O beta subunit) (FDH-Z beta subunit) (aerobic formate dehydrogenase iron-sulfur suchromosome CDS5660411 930 + 0.497849
fdoI plu4889 formate dehydrogenase, cytochrome B556(FDO) subunit (formate dehydrogenase-O gamma subunit) (FDH-Z gamma subunit) (aerobic formate dehydrogenase cytocchromosome CDS5661337 642 + 0.383178
fdx plu3278 Ferredoxin, 2Fe-2Schromosome CDS3894032 336 - 0.440476
feaB plu4285 Phenylacetaldehyde dehydrogenase (PAD)chromosome CDS5011083 1494 - 0.477242
fldA plu1328 flavodoxin 1chromosome CDS1544626 531 - 0.442561
fldB plu3553 flavodoxin 2chromosome CDS4187778 522 + 0.431034
fpr plu4769 ferredoxin--NADP reductase (FNR) (flavodoxin reductase) FLXR) (FLDR) (Methyl viologen resistance protein A) (DA1)chromosome CDS5551579 747 + 0.443106
frdA plu4124 fumarate reductase flavoprotein subunitchromosome CDS4813330 1797 + 0.482471
frdB plu4125 fumarate reductase iron-sulfur proteinchromosome CDS4815119 735 + 0.47619
frdC plu4126 fumarate reductase 15 kDa hydrophobic proteinchromosome CDS4815870 393 + 0.455471
frdD plu4127 fumarate reductase 13 kDa hydrophobic proteinchromosome CDS4816279 354 + 0.471751
fre plu4404 NAD(P)H-flavin reductase (NAD(P)H:flavin oxidoreductase)chromosome CDS5152827 702 - 0.430199
fumC plu2359 fumarate hydratase class II (fumarase)chromosome CDS2777283 1395 - 0.455914
gabD plu0984 succinate-semialdehyde dehydrogenasechromosome CDS1167350 1473 - 0.511202
galT plu0575 galactose-1-phosphate uridylyltransferasechromosome CDS651492 1074 + 0.42365
gldA plu4115 glycerol dehydrogenase (GLDH)chromosome CDS4802080 1101 + 0.456857
glpD plu0194 Aerobic glycerol-3-phosphate dehydrogenase GlpDchromosome CDS202039 1503 - 0.476381
glpK plu4768 glycerol kinase (ATP:glycerol 3-phosphotransferase) (glycerokinase) (GK)chromosome CDS5549647 1524 + 0.481627
glpQ plu4120 glycerophosphoryl diester phosphodiesterase, periplasmic precursor (glycerophosphodiester phosphodiesterase)chromosome CDS4808000 1077 + 0.409471
gltA plu1425 citrate synthasechromosome CDS1712183 1284 - 0.47352
gor plu0375 glutathione oxidoreductase (GR) (GRase)chromosome CDS403799 1371 + 0.460248
gpsA plu4838 glycerol-3-phosphate dehydrogenase [NAD(P)+] (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase)chromosome CDS5611370 1023 - 0.461388
hemG plu4398 protoporphyrinogen oxidase (PPO)chromosome CDS5145111 537 - 0.376164
hmpA plu3292 Flavohemoprotein (hemoglobin-like protein) (flavohemoglobin) (dihydropteridine reductase) (ferrisiderophore reductase B) (nitric oxide dioxygenase) (Nchromosome CDS3908686 1191 + 0.439127
hpcC plu0988 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenasechromosome CDS1171387 1467 - 0.523517
icd plu2801 isocitrate dehydrogenase [NADP]chromosome CDS3326562 1254 - 0.45933
ldhA plu2145 D-lactate dehydrogenase (D-LDH)chromosome CDS2527112 1005 - 0.414925
leuB plu3674 3-isopropylmalate dehydrogenase (beta-IPM dehydrogenase) (IMDH) (3-IPM-DH)chromosome CDS4327181 1092 + 0.455128
lpdA plu3621 dihydrolipoamide dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) (glycine cleavage system L protein)chromosome CDS4269678 1431 - 0.465409
luxA plu2081 Alkanal monooxygenase alpha chain (Bacterial luciferase alpha chain)chromosome CDS2465662 1080 + 0.397222
luxB plu2082 Alkanal monooxygenase beta chain (luciferase beta subunit)chromosome CDS2466759 975 + 0.357949
luxC plu2079 Fatty acid reductasechromosome CDS2463107 1443 + 0.365904
maeA plu1546 malate dehydrogenase (oxaloacetate-decarboxylating)chromosome CDS1849170 1698 - 0.465253
maeB plu2719 NADP-dependent malic enzyme (NADP-ME)chromosome CDS3225194 2280 - 0.450877
mdh plu4547 malate dehydrogenasechromosome CDS5307013 939 - 0.443024
mioC plu0050 Protein mioC, involved in modulation of initiation at oriC, initiation of chromosome replicationchromosome CDS44870 441 - 0.439909
ndh plu2821 NADH dehydrogenasechromosome CDS3351843 1305 - 0.425287
nifU plu3282 NifU proteinchromosome CDS3897224 387 - 0.434109
nqrA plu1196 Na(+)-translocating NADH-quinone reductase, chain Achromosome CDS1379815 1344 + 0.457589
nqrB plu1197 Na(+)-translocating NADH-quinone reductase, chain Bchromosome CDS1381163 1239 + 0.468119
nqrC plu1198 Na(+)-translocating NADH-quinone reductase, chain Cchromosome CDS1382394 798 + 0.462406
nqrD plu1199 Na(+)-translocating NADH-quinone reductase, chain Dchromosome CDS1383184 630 + 0.457143
nqrE plu1200 Na(+)-translocating NADH-quinone reductase, chain E (Na-NQR complex subunit 5)chromosome CDS1383822 597 + 0.435511
nqrF plu1201 Na+-translocating NADH-ubiquinone oxidoreductase, beta chainchromosome CDS1384434 1227 + 0.426243
nuoA plu3089 NADH dehydrogenase I chain A (NADH-ubiquinone oxidoreductase chain A)chromosome CDS3602718 450 - 0.455556
nuoB plu3088 NADH dehydrogenase I chain B (NADH-ubiquinone oxidoreductase chain 2) (NUO2)chromosome CDS3602026 675 - 0.481481
nuoC plu3087 NADH dehydrogenase I chain C/D (NADH-ubiquinone oxidoreductase chain 3/4) (NUO3/NUO4)chromosome CDS3600108 1800 - 0.490556
nuoE plu3086 NADH dehydrogenase I chain E (NADH-ubiquinone oxidoreductase chain 5) (NUO5)chromosome CDS3599557 549 - 0.471767
nuoF plu3085 NADH dehydrogenase I chain F (NADH-ubiquinone oxidoreductase chain 6) (NUO6)chromosome CDS3598196 1365 - 0.484982
nuoG plu3084 NADH dehydrogenase I chain G (NADH-ubiquinone oxidoreductase chain G) (NUO7)chromosome CDS3595394 2736 - 0.48538
nuoH plu3083 NADH dehydrogenase I chain H (NADH-ubiquinone oxidoreductase chain H) (NUO8)chromosome CDS3594420 978 - 0.489775
nuoI plu3082 NADH dehydrogenase I chain I (NADH-ubiquinone oxidoreductase chain 9) (NUO9)chromosome CDS3593863 543 - 0.467772
nuoJ plu3081 NADH dehydrogenase I chain J (NADH-ubiquinone oxidoreductase chain J)chromosome CDS3593305 546 - 0.47619
nuoK plu3080 NADH dehydrogenase I chain K (NADH-ubiquinone oxidoreductase chain K) (NUO11)chromosome CDS3593006 303 - 0.488449
nuoL plu3079 NADH dehydrogenase I chain L (NADH-ubiquinone oxidoreductase chain L) (NUO12)chromosome CDS3591162 1848 - 0.488636
nuoM plu3078 NADH dehydrogenase I chain M (NADH-ubiquinone oxidoreductase chain M) (NUO13)chromosome CDS3589621 1521 - 0.487179
nuoN plu3077 NADH dehydrogenase I chain N (NADH-ubiquinone oxidoreductase chain N) (NUO14)chromosome CDS3588157 1458 - 0.479424
pckA plu0100 phosphoenolpyruvate carboxykinase [ATP]chromosome CDS96415 1620 + 0.455556
pflB plu1613 formate acetyltransferase I (pyruvate formate-lyase 1)chromosome CDS1926634 2283 - 0.448971
pntA plu2167 NAD(P) transhydrogenase subunit alpha (pyridine nucleotide transhydrogenase subunit alpha) (nicotinamide nucleotide transhydrogenase subunit alpha)chromosome CDS2552735 1530 + 0.45817
pntB plu2168 NAD(P) transhydrogenase subunit beta (pyridine nucleotide transhydrogenase subunit beta) (nicotinamide nucleotide transhydrogenase subunit beta)chromosome CDS2554275 1389 + 0.462923
ppa plu4551 inorganic pyrophosphatase (pyrophosphate phospho-hydrolase) (PPase)chromosome CDS5312079 531 + 0.419962
ppc plu4746 phosphoenolpyruvate carboxylase (PEPCASE) (PEPC)chromosome CDS5525468 2637 + 0.467198
prkB plu0397 phosphoribulokinasechromosome CDS428165 870 - 0.462069
prpC plu3541 2-methylcitrate synthase (Methylcitrate synthase) (Citrate synthase 2)chromosome CDS4172282 1167 - 0.479006
putA plu1957 proline dehydrogenase (Proline oxidase) / delta-1-pyrroline-5-carboxylate dehydrogenase (p5c dehydrogenase)chromosome CDS2322639 3981 - 0.483044
qor plu4360 quinone oxidoreductase (NADPH:quinone reductase) (zeta-crystallin homolog protein)chromosome CDS5093176 984 + 0.468496
rfnD plu2380 Electron transport complex protein RnfDchromosome CDS2794818 1080 + 0.463889
rfnE plu2382 Electron transport complex protein RnfEchromosome CDS2796533 699 + 0.434907
rfnG plu2381 Electron transport complex protein RnfGchromosome CDS2795907 630 + 0.468254
rnfA plu2377 Electron transport complex protein RnfAchromosome CDS2791041 582 + 0.438144
rnfB plu2378 Electron transport complex protein RnfBchromosome CDS2791622 633 + 0.458136
rnfC plu2379 Electron transport complex protein RnfCchromosome CDS2792247 2559 + 0.489254
sdhA plu1428 succinate dehydrogenase flavoprotein subunitchromosome CDS1715067 1767 + 0.49519
sdhB plu1429 succinate dehydrogenase iron sulfur proteinchromosome CDS1716870 717 + 0.460251
sdhC plu1426 succinate dehydrogenase cytochrome b-556 subunitchromosome CDS1714474 252 + 0.468254
sdhD plu1427 succinate dehydrogenase hydrophobic membrane anchor subunitchromosome CDS1714719 348 + 0.456897
sthA plu4739 soluble pyridine nucleotide transhydrogenase (STH) (NAD(P)(+) transhydrogenase [B-specific])chromosome CDS5516733 1398 + 0.432761
sucA plu1430 2-oxoglutarate dehydrogenase E1 component (Alpha-ketoglutarate dehydrogenase)chromosome CDS1717853 2808 + 0.473647
sucB plu1431 Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex (E2)chromosome CDS1720675 1221 + 0.495495
sucC plu1432 succinyl-CoA synthetase beta chainchromosome CDS1722062 1167 + 0.490146
sucD plu1433 succinyl-CoA synthetase alpha chainchromosome CDS1723231 876 + 0.473744
tccA2 plu2460 Insecticidal toxin complex protein TccA2chromosome CDS2895541 3522 - 0.362862
trxA plu4664 thioredoxin 1 (TRX1) (TRX)chromosome CDS5437845 327 - 0.406728
ubiF plu1313 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase UbiFchromosome CDS1522956 1182 + 0.472081
ubiH plu3600 2-octaprenyl-6-methoxyphenol hydroxylasechromosome CDS4249603 1179 - 0.476675
visC plu3599 Probable monooxygenase VisCchromosome CDS4248344 1221 - 0.475839