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2024-05-17 11:01:09

Gene list

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COG category: Unclassified
Genomic element: pCP301

Number of genes found: 81

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Shigella flexneri 2a str. 301, 301
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA CP0097 orf, conserved hypothetical proteinpCP301 CDS82115 390 - 0.487179
NA CP0263 putative IS1294 ORFpCP301 CDS212633 189 - 0.566138
NA CP0161 putative IS1294 ORFpCP301 CDS137785 189 + 0.566138
NA CP0064 putative IS1 encoded proteinpCP301 CDS49511 198 - 0.484848
NA CP0071 putative IS1294 ORFpCP301 CDS57241 189 + 0.566138
NA CP0090 putative IS1294 ORFpCP301 CDS74709 363 + 0.556474
NA CP0160 putative IS1294 ORFpCP301 CDS137606 165 + 0.551515
NA CP0262 IS1294 ORFpCP301 CDS211427 1197 - 0.578947
NA CP0050 putative IS1 encoded proteinpCP301 CDS38612 213 - 0.474178
NA CP0261 orf, hypothetical proteinpCP301 CDS211006 192 + 0.53125
NA CP0061 IS1294 ORFpCP301 CDS46083 1209 + 0.575682
NA CP0169 orf, hypothetical proteinpCP301 CDS142682 429 + 0.519814
NA CP0038 orf, hypothetical proteinpCP301 CDS31392 420 + 0.530952
NA CP0043 IS1294 ORFpCP301 CDS33960 1200 + 0.576667
NA CP0015 IS91 ORFpCP301 CDS12871 357 - 0.521008
NA CP0272 IS629 ORF1pCP301 CDS221216 168 - 0.422619
NA CP0119 putative transposasepCP301 CDS99455 777 + 0.57529
NA CP0092 IS1294 ORFpCP301 CDS76328 930 - 0.565591
NA CP0200 orf, conserved hypothetical proteinpCP301 CDS165429 201 + 0.567164
NA CP0042 putative IS1294 ORFpCP301 CDS33762 189 + 0.566138
NA CP0186 orf, hypothetical proteinpCP301 CDS156758 186 + 0.419355
NA CP0023 orf, hypothetical proteinpCP301 CDS20087 315 + 0.495238
NA CP0014 orf, conserved hypothetical proteinpCP301 CDS11327 579 - 0.312608
NA CP0219 orf, hypothetical proteinpCP301 CDS178125 180 + 0.405556
NA CP0060a orf, hypothetical proteinpCP301 CDS45830 273 + 0.494505
NA CP0016 putative IS91 ORF2pCP301 CDS13227 186 - 0.532258
NA CP0201 orf, conserved hypothetical proteinpCP301 CDS165663 216 + 0.574074
NA CP0175 IS91 ORFpCP301 CDS144804 357 - 0.52381
NA CP0168 orf, conserved hypothetical proteinpCP301 CDS140876 717 - 0.313808
NA CP0164 IS1294 ORFpCP301 CDS74712 267 - 0.576779
NA CP0072 IS1294 ORFpCP301 CDS57439 1200 + 0.576667
NA CP0197 orf, hypothetical proteinpCP301 CDS164152 312 + 0.621795
NA CP0264 putative transposasepCP301 CDS212967 168 + 0.482143
NA CP0028 ISSfl3 ORFpCP301 CDS23820 1224 - 0.441176
NA CP0102 orf, conserved hypothetical proteinpCP301 CDS85560 420 - 0.314286
NA CP0176 putative IS91 ORF2pCP301 CDS145160 423 - 0.470449
NA CP0266 orf, hypothetical proteinpCP301 CDS216182 153 - 0.444444
NA CP0096 putative IS91 ORF2pCP301 CDS82466 189 + 0.433862
NA CP0162 orf, hypothetical proteinpCP301 CDS137953 357 - 0.579832
NA CP0209 orf, conserved hypothetical proteinpCP301 CDS171972 639 - 0.367762
NA CP0167 orf, conserved hypothetical proteinpCP301 CDS139920 405 - 0.493827
NA CP0111 orf, hypothetical proteinpCP301 CDS91689 165 + 0.587879
NA CP0034 orf, hypothetical proteinpCP301 CDS29339 183 - 0.415301
ccdB CP0225 post-segregation toxinpCP301 CDS180739 327 + 0.504587
finO CP0251 FinO, putative fertility inhibition proteinpCP301 CDS204898 561 + 0.566845
icsB CP0132 IcsB, invasion proteinpCP301 CDS114564 1485 - 0.338721
ipaA CP0125 IpaA, secreted by the Mxi-Spa machinery, modulates entry of bacteria into epithelial cellspCP301 CDS107178 1902 - 0.351735
ipaC CP0127 IpaC, secreted by the Mxi-Spa secretion machinery, required for entry into epithelial cellspCP301 CDS110137 1092 - 0.389194
ipaD CP0126 IpaD, secreted by the Mxi-Spa machinery, required for entry of bacteria into epithelial cellspCP301 CDS109088 999 - 0.357357
ipaJ CP0122 IpaJ, invasion plasmid antigenpCP301 CDS104066 780 + 0.378205
ipgA CP0131 IpgA, similarities to IpgE, putative chaperonepCP301 CDS114162 390 - 0.302564
ipgB1 CP0130 IpgB1, secreted by the Mxi-Spa machinery, function unknownpCP301 CDS113520 627 - 0.344498
ipgB2 CP0024 IpgB2, probably secreted by the Mxi-Spa secretion machinerypCP301 CDS20683 567 + 0.326279
ipgD CP0133 IpgD, secreted by the Mxi-Spa machinery, modulates entry of bacteria into epithelial cellspCP301 CDS116362 1617 + 0.357452
ipgE CP0134 IpgE, cytoplasmic chaperone for IpgDpCP301 CDS117988 363 + 0.349862
mkaD CP0010 mouse killing factorpCP301 CDS9576 720 - 0.381944
mob9 CP0228 plasmid mobilization proteinpCP301 CDS184482 180 - 0.466667
mxiH CP0137 MxiH, component of the Mxi-Spa secretion machinerypCP301 CDS119940 252 + 0.337302
mxiI CP0138 MxiI, component of the Mxi-Spa secretion machinerypCP301 CDS120204 294 + 0.35034
mxiK CP0140 MxiK, putative component of the Mxi-Spa secretion machinerypCP301 CDS121225 528 + 0.339015
mxiL CP0142 MxiL, secreted by and putative component of the Mxi-Spa secretion machinerypCP301 CDS122382 408 + 0.306373
mxiM CP0143 MxiM, lipoprotein, component of the Mxi-Spa secretion machinerypCP301 CDS122773 429 + 0.298368
mxiN CP0141 MxiN, putative component of the Mxi-Spa secretion machinerypCP301 CDS121694 696 + 0.318966
ospC1 CP0094 OspC1, secreted by the Mxi-Spa secretion machinery, function unknownpCP301 CDS79939 1413 - 0.318471
ospC2 CP0063 OspC2, probably secreted by the Mxi-Spa secretion machinery, function unknownpCP301 CDS47740 1455 - 0.325086
ospC3 CP0005 OspC3, probably secreted by the Mxi-Spa secretion machinery, function unknownpCP301 CDS3471 1275 - 0.316863
ospC4 CP0115 OspC4, probably secreted by the Mxi-Spa secretion machinery, function unknownpCP301 CDS95295 1455 + 0.315464
ospD2 CP0009 OspD2, probably secreted by the Mxi-Spa secretion machinery, function unknownpCP301 CDS7435 1710 - 0.331579
ospD3 CP0093 OspD3 (SenA), probably secreted by the Mxi-Spa secretion machinery, function unknownpCP301 CDS77913 1698 - 0.357479
repA CP0260 RepA, replication proteinpCP301 CDS209448 858 + 0.578089
repB CP0258 RepB, replication proteinpCP301 CDS208897 261 + 0.417625
spa15 CP0148 Spa15, putative component of the Mxi-Spa secretion machinerypCP301 CDS128822 402 + 0.333333
spa9 CP0154 Spa9, component of the Mxi-Spa secretion machinerypCP301 CDS133360 261 + 0.344828
stbB CP0194 plasmid stable inheritance proteinpCP301 CDS161459 396 - 0.388889
tap CP0259 TapApCP301 CDS209381 75 + 0.493333
traD CP0243 DNA transport proteinpCP301 CDS197923 186 + 0.543011
traX CP0250 F pilin acetylation proteinpCP301 CDS204097 747 + 0.576975
yccB CP0196 orf, conserved hypothetical proteinpCP301 CDS163184 972 + 0.540123
yceA CP0199 orf, conserved hypothetical proteinpCP301 CDS165211 222 + 0.531532
ycfA CP0202 orf, conserved hypothetical proteinpCP301 CDS165923 771 + 0.607004
yigA CP0252 orf, conserved hypothetical proteinpCP301 CDS205589 213 + 0.615023