TitleGenColors Logo
spacer
Home spacerGenomes
spacerMethods
spacerDocumentation spacerContactspacer spacerLeibniz FLI
spacer
QuickSearch
2024-05-16 01:06:33

Gene list

Applied filters:

COG category: Unclassified
Genomic element: pHCM1

Number of genes found: 134

Free access
Sort by:

 

Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
HCM1.01c putative membrane proteinpHCM1 CDS1 558 - 0.537634
HCM1.02c hypothetical proteinpHCM1 CDS742 312 - 0.509615
HCM1.03c hypothetical proteinpHCM1 CDS1367 324 - 0.487654
HCM1.08 hypothetical proteinpHCM1 CDS4014 330 + 0.466667
HCM1.102 hypothetical proteinpHCM1 CDS77433 987 + 0.509625
HCM1.104c hypothetical proteinpHCM1 CDS80458 255 - 0.537255
HCM1.106c putative lipoproteinpHCM1 CDS81234 873 - 0.457045
HCM1.108 putative membrane proteinpHCM1 CDS84470 876 + 0.366438
HCM1.109 hypothetical proteinpHCM1 CDS85404 378 + 0.375661
HCM1.10c hypothetical proteinpHCM1 CDS4363 207 - 0.531401
HCM1.110 hypothetical proteinpHCM1 CDS85842 987 + 0.383992
HCM1.112 hypothetical proteinpHCM1 CDS87979 270 + 0.359259
HCM1.114 hypothetical proteinpHCM1 CDS88319 1128 + 0.407801
HCM1.116 hypothetical proteinpHCM1 CDS89524 2013 + 0.411823
HCM1.116a hypothetical proteinpHCM1 CDS91608 222 + 0.423423
HCM1.117 hypothetical proteinpHCM1 CDS91923 1254 + 0.460128
HCM1.118 hypothetical proteinpHCM1 CDS93451 525 + 0.375238
HCM1.122 hypothetical proteinpHCM1 CDS97008 936 + 0.382479
HCM1.123 hypothetical proteinpHCM1 CDS98120 957 + 0.420063
HCM1.124 hypothetical proteinpHCM1 CDS99489 270 + 0.444444
HCM1.126 hypothetical proteinpHCM1 CDS100411 258 + 0.476744
HCM1.127 hypothetical proteinpHCM1 CDS100742 537 + 0.500931
HCM1.128 putative membrane proteinpHCM1 CDS101295 456 + 0.462719
HCM1.130 hypothetical proteinpHCM1 CDS101965 279 + 0.498208
HCM1.132 hypothetical proteinpHCM1 CDS103302 909 + 0.49505
HCM1.135 putative regulatory proteinpHCM1 CDS105911 213 + 0.41784
HCM1.13c hypothetical proteinpHCM1 CDS4604 225 - 0.466667
HCM1.141 hypothetical proteinpHCM1 CDS109949 1074 + 0.511173
HCM1.141ac hypothetical proteinpHCM1 CDS111100 144 - 0.402778
HCM1.142c hypothetical proteinpHCM1 CDS111279 489 - 0.529652
HCM1.143 hypothetical proteinpHCM1 CDS111903 276 + 0.427536
HCM1.144 hypothetical proteinpHCM1 CDS112168 201 + 0.517413
HCM1.149 hypothetical proteinpHCM1 CDS113598 927 + 0.509169
HCM1.15c putative membrane proteinpHCM1 CDS4882 207 - 0.492754
HCM1.161 hypothetical proteinpHCM1 CDS118573 213 + 0.591549
HCM1.163 hypothetical proteinpHCM1 CDS119966 285 + 0.540351
HCM1.166c putative aminoglycoside acetyltransferasepHCM1 CDS120907 57 - 0.473684
HCM1.174 putative periplasmic proteinpHCM1 CDS127673 492 + 0.428862
HCM1.175 putative DNA-binding proteinpHCM1 CDS128603 807 + 0.526642
HCM1.176 hypothetical proteinpHCM1 CDS129515 420 + 0.502381
HCM1.177 hypothetical proteinpHCM1 CDS129981 711 + 0.444444
HCM1.178 hypothetical proteinpHCM1 CDS130761 183 + 0.464481
HCM1.179c hypothetical proteinpHCM1 CDS132123 273 - 0.406593
HCM1.17c hypothetical proteinpHCM1 CDS5484 261 - 0.482759
HCM1.180c hypothetical proteinpHCM1 CDS132392 669 - 0.479821
HCM1.181 hypothetical proteinpHCM1 CDS133567 456 + 0.510965
HCM1.184c hypothetical proteinpHCM1 CDS135657 204 - 0.480392
HCM1.185c hypothetical proteinpHCM1 CDS135898 1296 - 0.50463
HCM1.186c hypothetical proteinpHCM1 CDS137218 171 - 0.444444
HCM1.191 hypothetical proteinpHCM1 CDS141444 288 + 0.4375
HCM1.192 putative membrane proteinpHCM1 CDS141795 300 + 0.356667
HCM1.193c hypothetical proteinpHCM1 CDS142344 609 - 0.343186
HCM1.195 hypothetical proteinpHCM1 CDS144632 3336 + 0.51229
HCM1.196 hypothetical proteinpHCM1 CDS148734 387 + 0.488372
HCM1.197c hypothetical proteinpHCM1 CDS149132 426 - 0.492958
HCM1.199c hypothetical proteinpHCM1 CDS150147 360 - 0.427778
HCM1.203 hypothetical proteinpHCM1 CDS152712 807 + 0.313507
HCM1.20c hypothetical proteinpHCM1 CDS5833 492 - 0.477642
HCM1.211c putative transposasepHCM1 CDS159604 627 - 0.547049
HCM1.221 putative replication proteinpHCM1 CDS164829 852 + 0.660798
HCM1.225 putative transposasepHCM1 CDS168741 621 + 0.536232
HCM1.229c hypothetical proteinpHCM1 CDS171362 237 - 0.691983
HCM1.23c hypothetical proteinpHCM1 CDS7312 285 - 0.414035
HCM1.24c hypothetical proteinpHCM1 CDS7598 321 - 0.439252
HCM1.250c putative periplasmic proteinpHCM1 CDS184508 351 - 0.344729
HCM1.251c hypothetical proteinpHCM1 CDS185006 615 - 0.552846
HCM1.255 putative lipoproteinpHCM1 CDS188443 612 + 0.488562
HCM1.256c putative membrane proteinpHCM1 CDS189113 423 - 0.482269
HCM1.257c puatative periplasmic proteinpHCM1 CDS189558 393 - 0.516539
HCM1.25c hypothetical proteinpHCM1 CDS7995 354 - 0.488701
HCM1.261 hypothetical proteinpHCM1 CDS191440 564 + 0.445035
HCM1.263c putative pilus-assembly proteinpHCM1 CDS196295 1416 - 0.46822
HCM1.266c hypothetical proteinpHCM1 CDS199358 513 - 0.419103
HCM1.268c hypothetical proteinpHCM1 CDS199873 801 - 0.388265
HCM1.269 hypothetical proteinpHCM1 CDS201431 486 + 0.40535
HCM1.270 hypothetical proteinpHCM1 CDS201913 723 + 0.431535
HCM1.273 hypothetical proteinpHCM1 CDS207762 1107 + 0.471545
HCM1.275 putative membrane proteinpHCM1 CDS208855 663 + 0.410256
HCM1.277 putative periplasmic proteinpHCM1 CDS210728 714 + 0.483193
HCM1.278c hypothetical proteinpHCM1 CDS211468 357 - 0.515406
HCM1.279ac putative membrane proteinpHCM1 CDS212540 237 - 0.514768
HCM1.279bc hypothetical proteinpHCM1 CDS213149 237 - 0.535865
HCM1.279c putative membrane proteinpHCM1 CDS211911 315 - 0.431746
HCM1.280c hypothetical proteinpHCM1 CDS213431 546 - 0.494505
HCM1.281c hypothetical proteinpHCM1 CDS214057 438 - 0.445205
HCM1.282 hypothetical proteinpHCM1 CDS214547 324 + 0.453704
HCM1.283c hypothetical proteinpHCM1 CDS214976 186 - 0.397849
HCM1.284c hypothetical proteinpHCM1 CDS215158 282 - 0.524823
HCM1.288 hypothetical proteinpHCM1 CDS217313 192 + 0.505208
HCM1.290c putative stable plasmid inheritance proteinpHCM1 CDS217566 159 - 0.490566
HCM1.29c hypothetical proteinpHCM1 CDS9866 732 - 0.539617
HCM1.30c hypothetical proteinpHCM1 CDS10705 225 - 0.475556
HCM1.31c putative membrane proteinpHCM1 CDS11016 465 - 0.412903
HCM1.33c hypothetical proteinpHCM1 CDS14215 513 - 0.500975
HCM1.34c hypothetical proteinpHCM1 CDS14709 807 - 0.50062
HCM1.35c hypothetical proteinpHCM1 CDS15743 192 - 0.5
HCM1.38c hypothetical proteinpHCM1 CDS16895 1182 - 0.529611
HCM1.41 hypothetical proteinpHCM1 CDS19211 327 + 0.565749
HCM1.42 hypothetical proteinpHCM1 CDS19772 777 + 0.508366
HCM1.43 hypothetical proteinpHCM1 CDS20698 777 + 0.528958
HCM1.43a hypothetical proteinpHCM1 CDS21539 123 + 0.544715
HCM1.44 hypothetical proteinpHCM1 CDS21663 342 + 0.491228
HCM1.45 hypothetical proteinpHCM1 CDS22009 360 + 0.511111
HCM1.48c hypothetical proteinpHCM1 CDS23333 420 - 0.538095
HCM1.49c putative periplasmic proteinpHCM1 CDS23840 2385 - 0.516562
HCM1.50 putative periplasmic proteinpHCM1 CDS26475 603 + 0.515755
HCM1.51 hypothetical proteinpHCM1 CDS27180 297 + 0.52862
HCM1.53 hypothetical proteinpHCM1 CDS27936 141 + 0.468085
HCM1.55ac hypothetical proteinpHCM1 CDS30447 204 - 0.504902
HCM1.55c putative periplasmic proteinpHCM1 CDS29935 498 - 0.445783
HCM1.56ac hypothetical proteinpHCM1 CDS34003 177 - 0.474576
HCM1.60c hypothetical proteinpHCM1 CDS38490 822 - 0.450122
HCM1.62c hypothetical proteinpHCM1 CDS40298 201 - 0.39801
HCM1.70 putative pilus assembly proteinpHCM1 CDS45078 798 + 0.389724
HCM1.71 putative periplasmic proteinpHCM1 CDS45878 1233 + 0.440389
HCM1.72 putative membrane proteinpHCM1 CDS47112 441 + 0.401361
HCM1.74 hypothetical proteinpHCM1 CDS48909 513 + 0.395712
HCM1.88c putative periplasmic proteinpHCM1 CDS59182 393 - 0.396947
HCM1.89c putative lipoproteinpHCM1 CDS59571 522 - 0.386973
HCM1.90c putative periplasmic proteinpHCM1 CDS60085 840 - 0.403571
HCM1.92 putative plasmid stability/partition proteinpHCM1 CDS62245 1035 + 0.421256
HCM1.97 putative periplasmic proteinpHCM1 CDS66122 4299 + 0.455222
htdF putative periplasmic proteinpHCM1 CDS65008 435 + 0.4
htdK hypothetical proteinpHCM1 CDS65439 564 + 0.45922
merT putative mercuric transport proteinpHCM1 CDS115058 366 + 0.612022
merT putative mercuric transport proteinpHCM1 CDS174468 351 - 0.612536
repA replication initiation proteinpHCM1 CDS28468 882 + 0.460317
repA2 replication initiation proteinpHCM1 CDS42127 876 + 0.43379
trhA putative pilin precursorpHCM1 CDS44356 354 + 0.451977
trhB putative plasmid transfer proteinpHCM1 CDS47542 1359 + 0.468727
trhL putative plasmid transfer proteinpHCM1 CDS44728 351 + 0.404558
trhU plasmid transfer proteinpHCM1 CDS72891 1008 + 0.487103
trhV putative plasmid transfer proteinpHCM1 CDS50289 951 + 0.475289
trhW plasmid transfer proteinpHCM1 CDS71193 1509 + 0.484427