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2024-05-18 08:52:03

Gene list

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Genomic element: pCTX-M3

Number of genes found: 228

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Citrobacter freundii
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA pCTX-M3 repeat_region3085 28 + 0.321429
NA pCTX-M3 misc_feature64640 1358 + 0.603093
NA pCTX-M3 repeat_region63800 14 + 0.5
NA pCTX-M3 repeat_region79595 14 + 0.5
NA pCTX-M3 repeat_region1557 22 + 0.181818
NA pCTX-M3 repeat_region64609 14 + 0.714286
NA pCTX-M3 repeat_region80404 14 + 0.571429
NA pCTX-M3 misc_feature65960 38 + 0.526316
NA pCTX-M3 terminator55962 18 + 0.666667
NA pCTX-M3 misc_feature31516 19 + 0.473684
NA pCTX-M3 misc_feature67754 1311 + 0.567506
NA pCTX-M3 terminator54286 24 + 0.5
NA pCTX-M3 -10_signal65763 6 + 0.333333
NA pCTX-M3 -35_signal65740 6 + 0.5
IS26 pCTX-M3 repeat_region63800 823 + 0.526124
IS26 pCTX-M3 repeat_region79595 823 + 0.521264
ISEcp1 pCTX-M3 repeat_region1557 1556 + 0.329692
aac3 pCTX-M3 RBS63639 5 - 0.6
aac3 aminoglycoside acetyltransferaseSubName: Full=Aminoglycoside acetyltransferase; pCTX-M3 CDS62770 861 - 0.598142
aadA2 streptomycin/spectinomycin 3' adenyltransferaseRecName: Full=Streptomycin 3-adenylyltransferase; EC=2.7.7.47; pCTX-M3 CDS66905 792 + 0.518939
blaCTX-M3 pCTX-M3 -10_signal3183 6 +
blaCTX-M3 pCTX-M3 RBS3231 3 + 0.666667
blaCTX-M3 pCTX-M3 terminator4126 26 + 0.423077
blaCTX-M3 ES-beta-lactamaseSubName: Full=Beta-lactamase; SubName: Full=ES-beta-lactamase; SubName: Full=Extended spectrum beta-lactamase CTX-M-3; pCTX-M3 CDS3240 876 + 0.547945
blaCTX-M3 pCTX-M3 -35_signal3161 7 + 0.571429
blaTEM1 pCTX-M3 RBS57804 5 - 0.4
blaTEM1 BlaTEM1SubName: Full=Beta-lactamase TEM-1; SubName: Full=BlaTEM1; SubName: Full=TEM-1; pCTX-M3 CDS56938 861 - 0.490128
dhfr dihydrofolate reductaseRecName: Full=Dihydrofolate reductase; EC=1.5.1.3; pCTX-M3 CDS66000 498 + 0.512048
excA pCTX-M3 RBS53611 5 + 0.6
excA ExcASubName: Full=ExcA; pCTX-M3 CDS53623 654 + 0.440367
intI pCTX-M3 -10_signal65882 6 - 0.333333
intI pCTX-M3 -35_signal65905 6 - 0.5
intI class I integron integraseSubName: Full=Class I integron integrase; SubName: Full=IntI1; SubName: Full=Integrase; pCTX-M3 CDS64842 1014 - 0.612426
klcA pCTX-M3 RBS27881 5 + 0.6
klcA KlcASubName: Full=KlcA; pCTX-M3 CDS27894 441 + 0.553288
korC pCTX-M3 RBS22099 5 + 0.8
korC KorCSubName: Full=KorC; pCTX-M3 CDS22110 267 + 0.573034
mel pCTX-M3 RBS75442 5 + 0.6
mel probable macrolide efflux proteinSubName: Full=Macrolide efflux protein; SubName: Full=Mel; SubName: Full=Probable macrolide efflux protein; pCTX-M3 CDS75457 1476 + 0.399729
mph1 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS76988 237 + 0.383966
mph1 pCTX-M3 RBS76975 5 + 0.4
mph2 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS77243 630 + 0.361905
mucA pCTX-M3 -10_signal4720 6 +
mucA pCTX-M3 protein_bind4714 18 + 0.222222
mucA pCTX-M3 RBS4736 5 + 0.8
mucA pCTX-M3 -35_signal4698 6 + 0.5
mucA MucASubName: Full=MucA; pCTX-M3 CDS4748 435 + 0.577011
mucB pCTX-M3 RBS5111 5 + 0.6
mucB MucBSubName: Full=MucB; pCTX-M3 CDS5131 1305 + 0.597701
nbrB NbrBSubName: Full=NbrB; pCTX-M3 CDS72385 774 + 0.303618
nbrB pCTX-M3 RBS72373 3 + 0.666667
nikA pCTX-M3 RBS31708 5 + 0.6
nikA NikASubName: Full=NikA; pCTX-M3 CDS31723 318 + 0.443396
nikB putative nickaseSubName: Full=Putative nickase; pCTX-M3 CDS32030 1977 + 0.479514
nikB pCTX-M3 RBS32018 5 + 0.6
nuc NucSubName: Full=Nuc; pCTX-M3 CDS18643 552 + 0.565217
nuc pCTX-M3 RBS18633 4 + 0.75
orf1 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS4162 549 - 0.553734
orf10 pCTX-M3 RBS11718 4 + 0.75
orf10 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS11730 357 + 0.59944
orf11 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS12064 585 + 0.594872
orf11 pCTX-M3 RBS12053 4 + 0.75
orf12 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS12645 720 + 0.606944
orf12 pCTX-M3 RBS12634 4 + 0.75
orf13 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS13526 546 - 0.538462
orf13 pCTX-M3 RBS14077 5 - 0.6
orf14 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS14212 462 + 0.621212
orf14 pCTX-M3 RBS14197 5 + 0.6
orf15 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS14670 249 + 0.570281
orf15 pCTX-M3 RBS14657 4 + 0.75
orf16 pCTX-M3 RBS14900 4 + 0.75
orf16 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS14911 588 + 0.557823
orf17 pCTX-M3 RBS15485 5 + 0.6
orf17 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS15495 486 + 0.572016
orf18 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS15977 249 + 0.518072
orf18 pCTX-M3 RBS15969 4 + 0.5
orf19 pCTX-M3 RBS19300 5 + 0.6
orf19 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS19312 507 + 0.544379
orf2 pCTX-M3 RBS7321 5 - 0.8
orf2 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS6458 852 - 0.629108
orf20 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS19811 480 + 0.545833
orf20 pCTX-M3 RBS19800 4 + 0.75
orf21 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS20319 411 + 0.547445
orf21 pCTX-M3 RBS20308 5 + 0.6
orf22 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS20847 264 + 0.454545
orf22 pCTX-M3 RBS20835 5 + 0.6
orf23 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS21132 363 + 0.465565
orf23 pCTX-M3 terminator21504 22 + 0.454545
orf23 pCTX-M3 RBS21118 4 + 0.75
orf24 pCTX-M3 RBS21605 4 + 0.75
orf24 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS21616 450 + 0.526667
orf25 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS22440 1284 + 0.517134
orf25 pCTX-M3 RBS22429 5 + 0.4
orf26 pCTX-M3 RBS24570 5 + 0.6
orf26 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS24581 861 + 0.526132
orf27 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS25631 339 + 0.507375
orf27 pCTX-M3 RBS25618 5 + 0.6
orf28 pCTX-M3 RBS26581 6 + 0.666667
orf28 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS26595 237 + 0.552743
orf29 pCTX-M3 RBS26904 5 + 0.6
orf29 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS26916 411 + 0.542579
orf3 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS7312 321 - 0.545171
orf3 pCTX-M3 RBS7647 4 - 0.5
orf30 pCTX-M3 RBS27375 6 + 0.666667
orf30 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS27388 306 + 0.526144
orf31 pCTX-M3 RBS28368 4 + 0.75
orf31 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS28378 285 + 0.505263
orf32 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS28816 222 + 0.373874
orf32 pCTX-M3 RBS28806 5 + 0.6
orf33 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS29601 312 + 0.474359
orf33 pCTX-M3 RBS29590 4 + 0.75
orf34 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS30045 537 + 0.422719
orf34 pCTX-M3 RBS30033 4 + 0.75
orf35 pCTX-M3 RBS31453 4 - 0.75
orf35 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS31082 366 - 0.42623
orf36 pCTX-M3 RBS40375 5 + 0.8
orf36 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS40386 666 + 0.453453
orf37 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS45675 447 - 0.50783
orf37 pCTX-M3 RBS46131 4 - 0.75
orf38 pCTX-M3 RBS46043 4 + 0.75
orf38 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS46054 495 + 0.428283
orf39 pCTX-M3 RBS61270 6 - 0.666667
orf39 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS60104 1158 - 0.607081
orf4 pCTX-M3 RBS8481 4 - 0.75
orf4 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS7777 693 - 0.542569
orf40 pCTX-M3 RBS61528 5 - 0.8
orf40 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS61291 228 - 0.530702
orf41 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS62215 543 - 0.570902
orf41 pCTX-M3 RBS62767 4 - 0.75
orf42 pCTX-M3 RBS69434 5 + 0.8
orf42 putative proteinSubName: Full=ISCR1; SubName: Full=ISCR1 transposase; SubName: Full=Orf513; SubName: Full=Putative transposase; SubName: Full=Uncharacterized protein; pCTX-M3 CDS69445 1542 + 0.554475
orf43 pCTX-M3 RBS73836 4 - 0.5
orf43 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS73640 186 - 0.354839
orf44 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS78231 543 - 0.377532
orf46 pCTX-M3 RBS84108 7 - 0.714286
orf46 putative transcriptional regulatorSubName: Full=Putative transcriptional regulator; pCTX-M3 CDS83591 510 - 0.523529
orf47 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS89016 351 - 0.495726
orf47 pCTX-M3 RBS89375 4 - 0.75
orf5 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS8484 210 - 0.504762
orf5 pCTX-M3 RBS8702 4 - 0.5
orf6 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS8696 219 - 0.52968
orf6 pCTX-M3 RBS8923 4 - 0.75
orf7 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS8959 684 - 0.649123
orf7 pCTX-M3 RBS9649 5 - 0.8
orf8 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS9639 273 - 0.666667
orf8 pCTX-M3 RBS9921 5 - 0.8
orf9 pCTX-M3 RBS11210 4 - 0.5
orf9 putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS9929 1275 - 0.596078
orfF putative proteinSubName: Full=Uncharacterized protein; pCTX-M3 CDS66609 291 + 0.525773
parA ParASubName: Full=ParA; pCTX-M3 CDS17213 975 + 0.555897
parA pCTX-M3 RBS17203 4 + 0.75
parB pCTX-M3 RBS18180 4 + 0.75
parB ParBSubName: Full=ParB; pCTX-M3 CDS18190 444 + 0.59009
pemI pCTX-M3 RBS741 5 +
pemI PemISubName: Full=PemI; pCTX-M3 CDS757 258 + 0.554264
pemK pCTX-M3 RBS1002 5 + 0.8
pemK PemKRecName: Full=mRNA interferase; EC=3.1.-.-; pCTX-M3 CDS1016 333 + 0.603604
pri DNA primaseSubName: Full=DNA primase; pCTX-M3 CDS36745 3213 + 0.499533
pri pCTX-M3 RBS36732 4 + 0.75
qacEdelta1 remnants of quarternary ammonium compounds resistance proteinSubName: Full=QacEdelta1; SubName: Full=Quartenary ammonium compound resistance protein; SubName: Full=Quaternary ammonium compound resistance protein; SubName: Full=Quaternary ammonium compound resistance protein protein; SubName: Full=Quaternary ammonium compound-resistance protein; SubName: Full=Remnants of quarternary ammonium compounds resistance protein; pCTX-M3 CDS67860 348 + 0.5
qacEdelta1 pCTX-M3 RBS67849 4 + 0.75
repA pCTX-M3 RBS54871 4 + 0.75
repA RepASubName: Full=RepA; pCTX-M3 CDS54879 1056 + 0.586174
repB pCTX-M3 RBS54818 5 + 0.4
repB RepBSubName: Full=RepB; pCTX-M3 CDS54832 51 + 0.54902
repC pCTX-M3 RBS54341 4 + 0.75
repC RepCSubName: Full=RepC; pCTX-M3 CDS54351 231 + 0.415584
resD pCTX-M3 RBS16229 4 + 1
resD resolvaseSubName: Full=Resolvase; pCTX-M3 CDS16244 729 + 0.56653
rmoA pCTX-M3 RBS26054 4 + 0.5
rmoA RmoASubName: Full=RmoA; pCTX-M3 CDS26067 231 + 0.575758
ssb SsbRecName: Full=Single-stranded DNA-binding protein; pCTX-M3 CDS29109 435 + 0.485057
ssb pCTX-M3 RBS29099 4 + 0.75
sul1 dihydropteroate synthaseSubName: Full=Dihydropteroate synthase; SubName: Full=Dihydropteroate synthase type I; SubName: Full=Sul1; pCTX-M3 CDS68201 840 + 0.616667
sul1 pCTX-M3 RBS68188 5 + 0.8
tir transfer inhibition proteinSubName: Full=Transfer inhibition protein; pCTX-M3 CDS11 654 + 0.559633
tir pCTX-M3 RBS1 4 + 0.75
tnp putative transposaseSubName: Full=Putative transposase; SubName: Full=TnpD; pCTX-M3 CDS73874 1185 + 0.469198
tnpA pCTX-M3 -10_signal1597 6 + 0.333333
tnpA transposaseSubName: Full=TnpA ISEcp1; SubName: Full=Transposase; pCTX-M3 CDS1643 1263 + 0.340459
tnpA pCTX-M3 RBS1630 4 + 0.75
tnpA pCTX-M3 -35_signal1574 6 + 0.166667
tnpATn1 TnpASubName: Full=TnpA; pCTX-M3 CDS80487 2550 + 0.516863
tnpAcp1 pCTX-M3 RBS71310 3 + 0.666667
tnpAcp1 putative transposaseSubName: Full=Putative transposase; pCTX-M3 CDS71322 738 + 0.577236
tnpAcp2 pCTX-M3 RBS59998 4 - 1
tnpAcp2 putative transposaseSubName: Full=Putative transposase; pCTX-M3 CDS58619 1371 - 0.588621
tnpIS26cp1 pCTX-M3 RBS63853 4 + 0.75
tnpIS26cp1 transposaseSubName: Full=TnpA; SubName: Full=Transposase; pCTX-M3 CDS63863 705 + 0.531915
tnpIS26cp2 pCTX-M3 RBS79648 4 + 0.75
tnpIS26cp2 transposaseSubName: Full=Transposase; pCTX-M3 CDS79658 705 + 0.529078
traH TraHSubName: Full=TraH; pCTX-M3 CDS34020 501 + 0.487026
traH pCTX-M3 RBS34010 4 + 0.75
traI TraISubName: Full=TraI; pCTX-M3 CDS34517 780 + 0.521795
traI pCTX-M3 RBS34504 4 + 0.75
traJ TraJSubName: Full=TraJ; pCTX-M3 CDS35307 1164 + 0.519759
traJ pCTX-M3 RBS35296 4 + 0.75
traK TraKSubName: Full=TraK; pCTX-M3 CDS36460 261 + 0.51341
traK pCTX-M3 RBS36450 4 + 0.75
traL pCTX-M3 RBS39907 5 + 0.6
traL TraLSubName: Full=TraL; pCTX-M3 CDS39923 513 + 0.477583
traM TraMSubName: Full=TraM; pCTX-M3 CDS41029 783 + 0.44189
traN TraNSubName: Full=TraN; pCTX-M3 CDS41820 1152 + 0.533854
traN pCTX-M3 RBS41810 4 + 0.75
traO pCTX-M3 RBS42971 4 + 0.75
traO TraOSubName: Full=TraO; pCTX-M3 CDS42983 1350 + 0.531852
traP TraPSubName: Full=TraP; pCTX-M3 CDS44344 705 + 0.465248
traP pCTX-M3 RBS44332 5 + 0.6
traQ pCTX-M3 RBS45061 4 + 0.5
traQ TraQSubName: Full=TraQ; pCTX-M3 CDS45072 531 + 0.480226
traR TraRSubName: Full=TraR; pCTX-M3 CDS45619 390 + 0.482051
traR pCTX-M3 RBS45608 5 + 0.4
traU TraUSubName: Full=TraU; pCTX-M3 CDS46545 3051 + 0.470993
traU pCTX-M3 RBS46535 4 + 0.75
traW pCTX-M3 RBS49581 4 + 0.75
traW TraWSubName: Full=TraW; pCTX-M3 CDS49592 1209 + 0.535153
traX pCTX-M3 RBS50783 4 + 0.75
traX TraXSubName: Full=TraX; pCTX-M3 CDS50797 651 + 0.423963
traY pCTX-M3 RBS51428 5 + 0.8
traY TraYSubName: Full=TraY; pCTX-M3 CDS51440 2181 + 0.451628
trbA pCTX-M3 RBS88522 4 - 0.75
trbA TrbASubName: Full=TrbA; pCTX-M3 CDS87209 1308 - 0.571101
trbB TrbBSubName: Full=TrbB; pCTX-M3 CDS86248 951 - 0.555205
trbB pCTX-M3 RBS87203 4 - 0.75
trbC TrbCSubName: Full=TrbC; pCTX-M3 CDS84148 2088 - 0.546935
trbC pCTX-M3 RBS86241 4 - 0.75
trbN putative lytic transglycosylaseSubName: Full=Putative lytic transglycosylase; pCTX-M3 CDS88516 396 - 0.522727
trbN pCTX-M3 RBS88918 5 - 0.6