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2024-05-19 17:21:42

Gene list

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Genomic element: pDV

Number of genes found: 154

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Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, Hildenborough
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA DVUA0135 CRISPR-associated protein Cas2RecName: Full=CRISPR-associated endoribonuclease Cas2; EC=3.1.-.-; pDV CDS175411 309 + 0.546926
NA DVUA0137 response regulatorSubName: Full=Response regulator; pDV CDS178783 648 - 0.637346
NA DVUA0041 conserved domain proteinSubName: Full=Conserved domain protein; pDV CDS49094 1320 + 0.674242
NA DVUA0077 ABC transporter, permease proteinSubName: Full=ABC transporter, permease protein; pDV CDS104230 885 - 0.60226
NA DVUA0031 hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS34717 867 - 0.648212
NA DVUA0068 membrane protein, putativeSubName: Full=Membrane protein, putative; pDV CDS88333 1983 - 0.573878
NA DVUA0147 conserved hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS192334 1242 + 0.677134
NA DVUA0078 hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS105230 159 - 0.540881
NA DVUA0059 conserved hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS72938 1377 + 0.717502
NA DVUA0028 hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS31587 411 + 0.527981
NA DVUA0002 ParA family proteinSubName: Full=ParA family protein; pDV CDS871 819 + 0.631258
NA DVUA0087 sensory box histidine kinaseSubName: Full=Sensory box histidine kinase; pDV CDS116475 3114 - 0.648362
NA pDV repeat_region175897 1818 - 0.663916
NA DVUA0036 TPR domain proteinSubName: Full=TPR domain protein; pDV CDS41239 2748 + 0.703057
NA DVUA0124 sigma factor serine-protein kinaseSubName: Full=Sigma factor serine-protein kinase; pDV CDS162643 417 + 0.645084
NA DVUA0073 asparagine synthase (glutamine-hydrolyzing), putativeSubName: Full=Asparagine synthase (Glutamine-hydrolyzing), putative; pDV CDS97846 2670 - 0.613483
NA DVUA0023 ABC transporter, permease protein, putativeSubName: Full=ABC transporter, permease protein, putative; pDV CDS28487 1131 - 0.657825
NA DVUA0072 glycosyl transferase, group 1 family proteinSubName: Full=Glycosyl transferase, group 1 family protein; pDV CDS96400 1338 - 0.586697
NA DVUA0016 homocitrate synthaseSubName: Full=Homocitrate synthase; pDV CDS20468 1155 + 0.710823
NA DVUA0033 hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS36600 198 + 0.535354
NA DVUA0148 major facilitator superfamily proteinSubName: Full=Major facilitator superfamily protein; pDV CDS193583 3018 + 0.708748
NA DVUA0037 sugar transferase domain proteinSubName: Full=Sugar transferase domain protein; pDV CDS44190 1455 + 0.692784
NA DVUA0049 polysaccharide biosynthesis family proteinSubName: Full=Polysaccharide biosynthesis family protein; pDV CDS59761 1470 + 0.682993
NA DVUA0008 nitrogenase molybdenum-iron cofactor biosynthesis protein NifN, putativeSubName: Full=Nitrogenase molybdenum-iron cofactor biosynthesis protein NifN, putative; pDV CDS10458 1515 - 0.69967
NA DVUA0139 outer membrane autotransporter barrel domain proteinSubName: Full=Outer membrane autotransporter barrel domain protein; pDV CDS181665 1980 - 0.574748
NA DVUA0046 glycosyl transferase, group 2 family proteinSubName: Full=Glycosyl transferase, group 2 family protein; pDV CDS55465 1449 + 0.714286
NA DVUA0057 sigma-54 dependent transcriptional regulator/response regulatorSubName: Full=Sigma-54 dependent transcriptional regulator/response regulator; pDV CDS68687 1431 + 0.685535
NA DVUA0066 phospholipase, patatin familySubName: Full=Phospholipase, patatin family; pDV CDS85372 1413 + 0.671621
NA DVUA0106 type III secretion target, YopN familySubName: Full=Type III secretion target, YopN family; pDV CDS143522 1125 - 0.681778
NA DVUA0083 hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS110806 129 + 0.581395
NA DVUA0146 hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS191285 471 + 0.698514
NA DVUA0052 conserved hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS64069 669 + 0.650224
NA DVUA0074 sulfotransferase family proteinSubName: Full=Sulfotransferase family protein; pDV CDS100606 690 - 0.523188
NA DVUA0064 conserved domain proteinSubName: Full=Conserved domain protein; pDV CDS80843 2043 + 0.718551
NA DVUA0126 conserved hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS164796 468 + 0.634615
NA DVUA0127 hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS165260 2751 - 0.704108
NA DVUA0048 exopolysaccharide production protein, putativeSubName: Full=Exopolysaccharide production protein, putative; pDV CDS58360 1398 + 0.703147
NA DVUA0144 hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS186548 144 - 0.569444
NA DVUA0044 conserved hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS52878 978 + 0.710634
NA DVUA0090 membrane protein, putativeSubName: Full=Membrane protein, putative; pDV CDS122486 873 + 0.665521
NA DVUA0140 hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS183659 204 - 0.470588
NA DVUA0076 ABC transporter, ATP-binding proteinSubName: Full=ABC transporter, ATP-binding protein; pDV CDS102804 1395 - 0.597133
NA DVUA0051 glycosyl transferase, group 1 family proteinSubName: Full=Glycosyl transferase, group 1 family protein; pDV CDS62499 1389 + 0.717063
NA DVUA0089 hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS121289 618 - 0.580906
NA DVUA0128 hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS168022 147 - 0.52381
NA DVUA0080 glycosyl transferase, group 2 family proteinSubName: Full=Glycosyl transferase, group 2 family protein; pDV CDS106366 882 + 0.659864
NA DVUA0065 sensor histidine kinaseSubName: Full=Sensor histidine kinase; pDV CDS82882 2037 + 0.689249
NA DVUA0093 chromate transport family proteinSubName: Full=Chromate transport family protein; pDV CDS125839 1338 - 0.671151
NA DVUA0152 conserved domain proteinSubName: Full=Conserved domain protein; pDV CDS200240 1296 + 0.700617
NA DVUA0130 CRISPR-associated protein, CT1134 familySubName: Full=CRISPR-associated protein, CT1134 family; pDV CDS170376 684 + 0.622807
NA DVUA0063 Orn/DAP/Arg family decarboxylaseSubName: Full=Orn/DAP/Arg family decarboxylase; pDV CDS78536 1557 + 0.700706
NA DVUA0084 transcriptional regulator, AbrB familySubName: Full=Transcriptional regulator, AbrB family; pDV CDS111110 192 + 0.583333
NA DVUA0110 type III secretion system target, YopB familySubName: Full=Type III secretion system target, YopB family; pDV CDS146706 1008 + 0.650794
NA DVUA0092 hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS125171 480 - 0.6375
NA DVUA0035 hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS40404 348 - 0.551724
NA DVUA0115 type III secretion system protein, YscF familySubName: Full=Type III secretion system protein, YscF family; pDV CDS153276 252 + 0.587302
NA DVUA0060 membrane protein, putativeSubName: Full=Membrane protein, putative; pDV CDS74453 1386 + 0.681097
NA DVUA0056 hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS67912 621 + 0.695652
NA DVUA0030 hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS33321 702 + 0.636752
NA DVUA0132 CRISPR-associated protein, TM1801 familySubName: Full=CRISPR-associated protein, TM1801 family; pDV CDS172897 873 + 0.609393
NA DVUA0131 CRISPR-associated protein, CT1133 familySubName: Full=CRISPR-associated protein, CT1133 family; pDV CDS171056 1839 + 0.587819
NA DVUA0151 DNA-binding protein, putativeSubName: Full=DNA-binding protein, putative; pDV CDS199858 393 + 0.684478
NA DVUA0112 type III secretion system protein, YscC familySubName: Full=Type III secretion system protein, YscC family; pDV CDS149369 1875 + 0.666133
NA DVUA0109 type III secretion system chaperone, LcrH/SycD familySubName: Full=Type III secretion system chaperone, LcrH/SycD family; pDV CDS146209 501 + 0.674651
NA DVUA0006 magnesium transporter MgtE, putativeSubName: Full=Magnesium transporter MgtE, putative; pDV CDS7456 996 - 0.61245
NA DVUA0034 conserved domain proteinSubName: Full=Conserved domain protein; pDV CDS37254 2970 - 0.674074
NA DVUA0107 hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS144885 105 + 0.52381
NA DVUA0142 hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS184272 495 - 0.660606
NA DVUA0082 site-specific recombinase, phage integrase familySubName: Full=Site-specific recombinase, phage integrase family; pDV CDS109666 1032 - 0.646318
NA DVUA0054 glycosyl transferase, group 1 family proteinSubName: Full=Glycosyl transferase, group 1 family protein; pDV CDS65572 1401 + 0.713776
NA DVUA0114 hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS153041 210 + 0.685714
NA DVUA0009 nitrogenase MoFe cofactor biosynthesis protein NifE domain proteinSubName: Full=Nitrogenase MoFe cofactor biosynthesis protein NifE domain protein; pDV CDS11959 1707 - 0.677797
NA DVUA0121 type III secretion system protein, YopQ familySubName: Full=Type III secretion system protein, YopQ family; pDV CDS160160 1455 + 0.715464
NA DVUA0050 conserved hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS61246 1257 + 0.698488
NA DVUA0133 CRISPR-associated protein Cas4SubName: Full=CRISPR-associated protein Cas4; pDV CDS173771 639 + 0.619718
NA DVUA0116 conserved hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS153722 366 + 0.650273
NA DVUA0025 response regulator receiver domain proteinSubName: Full=Response regulator receiver domain protein; EC=2.7.3.-; pDV CDS30780 462 - 0.664502
NA DVUA0069 GtrA family protein, selenocysteine-containingSubName: Full=GtrA family protein, selenocysteine-containing; pDV CDS90871 1158 - 0.593264
NA DVUA0026 hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS31267 114 + 0.403509
NA DVUA0122 type III secretion system protein, YscR familySubName: Full=Type III secretion system protein, YscR family; pDV CDS161611 651 + 0.617512
NA DVUA0022 ABC transporter, ATP-binding proteinSubName: Full=ABC transporter, ATP-binding protein; pDV CDS27702 687 - 0.6754
NA DVUA0019 type II DNA modification methyltransferase, putativeSubName: Full=Type II DNA modification methyltransferase, putative; pDV CDS22786 1659 + 0.440024
NA DVUA0062 conserved domain proteinSubName: Full=Conserved domain protein; pDV CDS77184 1296 + 0.701389
NA DVUA0071 glycosyl transferase, group 1/2 family proteinSubName: Full=Glycosyl transferase, group 1/2 family protein; pDV CDS94115 2157 - 0.630505
NA DVUA0118 type III secretion protein, YopL familySubName: Full=Type III secretion protein, YopL family; pDV CDS156694 618 + 0.679612
NA DVUA0047 hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS56989 1317 + 0.704632
NA DVUA0141 hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS183952 237 - 0.481013
NA DVUA0145 conserved domain proteinSubName: Full=Conserved domain protein; pDV CDS187348 3927 + 0.702572
NA DVUA0039 chain length determinant family proteinSubName: Full=Chain length determinant family protein; pDV CDS46451 1503 + 0.652029
NA DVUA0125 transglycosylase, SLT familySubName: Full=Transglycosylase, SLT family; pDV CDS163070 1353 + 0.702143
NA DVUA0123 anti-anti-sigma factorRecName: Full=Anti-sigma factor antagonist; pDV CDS162292 336 + 0.66369
NA DVUA0021 conserved hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS26632 1062 - 0.690207
NA DVUA0058 BNR/Asp-box repeat proteinSubName: Full=BNR/Asp-box repeat protein; pDV CDS70158 2736 + 0.709795
NA DVUA0119 type III secretion system ATPaseSubName: Full=Type III secretion system ATPase; EC=3.6.3.14; pDV CDS157639 1317 + 0.667426
NA DVUA0075 radical SAM domain proteinSubName: Full=Radical SAM domain protein; pDV CDS101383 1407 - 0.555082
NA DVUA0042 lipoprotein, putativeSubName: Full=Lipoprotein, putative; pDV CDS50590 1323 + 0.649282
NA DVUA0038 capsular polysaccharide transport proteinSubName: Full=Capsular polysaccharide transport protein; pDV CDS45644 807 + 0.653036
NA DVUA0045 aminotransferase, DegT/DnrJ/EryC1/StrS familySubName: Full=Aminotransferase, DegT/DnrJ/EryC1/StrS family; pDV CDS53852 1617 + 0.734694
NA DVUA0085 conserved hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS111356 3531 + 0.53979
NA DVUA0029 hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS32118 681 - 0.549192
NA DVUA0098 dehydrogenase, putativeSubName: Full=Dehydrogenase, putative; pDV CDS132351 1050 - 0.697143
NA DVUA0043 polysaccharide deacetylase family proteinSubName: Full=Polysaccharide deacetylase family protein; pDV CDS51965 852 + 0.656103
NA DVUA0099 HAMP domain proteinSubName: Full=HAMP domain protein; pDV CDS133570 2184 - 0.688187
NA DVUA0097 radical SAM domain proteinSubName: Full=Radical SAM domain protein; pDV CDS130707 1500 + 0.698667
NA DVUA0104 type III secretion inner membrane protein, HrcV familySubName: Full=Type III secretion inner membrane protein, HrcV family; pDV CDS140328 2094 - 0.65425
NA DVUA0024 sigma-54 interaction domain proteinSubName: Full=Sigma-54 interaction domain protein; pDV CDS29689 1140 - 0.67807
NA DVUA0010 ferredoxin, 2fe-2sSubName: Full=Ferredoxin, 2fe-2s; pDV CDS14308 303 - 0.640264
NA DVUA0005 universal stress protein familySubName: Full=Universal stress protein family; pDV CDS6498 936 - 0.65812
NA DVUA0111 type III secretion system protein, IpaC family, putativeSubName: Full=Type III secretion system protein, IpaC family, putative; pDV CDS147662 897 + 0.638796
NA DVUA0086 response regulatorSubName: Full=Response regulator; pDV CDS114998 1092 - 0.661172
NA DVUA0032 hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS35708 861 - 0.635308
NA DVUA0070 conserved domain proteinSubName: Full=Conserved domain protein; pDV CDS92091 1932 - 0.636646
NA DVUA0113 type III secretion protein, YscD familySubName: Full=Type III secretion protein, YscD family; pDV CDS151240 1809 + 0.698176
NA DVUA0017 hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS22251 111 + 0.495495
NA DVUA0020 type II restriction endonuclease, putativeSubName: Full=Type II restriction endonuclease, putative; pDV CDS24444 741 + 0.449393
NA DVUA0088 conserved hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS119777 1020 - 0.659804
NA DVUA0001 hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS699 174 - 0.482759
NA DVUA0053 conserved hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS64988 588 + 0.685374
NA DVUA0040 polysaccharide biosynthesis protein, putativeSubName: Full=Polysaccharide biosynthesis protein, putative; pDV CDS47964 1119 + 0.691689
NA DVUA0100 sigma-54 dependent transcriptional regulatorSubName: Full=Sigma-54 dependent transcriptional regulator; pDV CDS136112 1728 - 0.689815
NA DVUA0101 type III secretion protein, hrpY/hrcU familySubName: Full=Type III secretion protein, hrpY/hrcU family; pDV CDS137887 1041 - 0.627281
NA DVUA0003 hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS1740 3396 + 0.676384
NA DVUA0067 membrane protein, putativeSubName: Full=Membrane protein, putative; pDV CDS87157 1125 - 0.500444
NA DVUA0120 type III secretion protein, putativeSubName: Full=Type III secretion protein, putative; pDV CDS159466 693 + 0.691198
NA DVUA0105 conserved hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS143145 375 - 0.696
NA DVUA0150 bacterial extracellular solute-binding protein, family 3SubName: Full=Bacterial extracellular solute-binding protein, family 3; pDV CDS198609 738 - 0.612466
NA DVUA0149 hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS196632 1785 + 0.722689
NA DVUA0061 membrane protein, putativeSubName: Full=Membrane protein, putative; pDV CDS75835 1353 + 0.702882
NA DVUA0108 hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS145691 510 + 0.582353
NA DVUA0095 hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS128594 486 + 0.596708
NA DVUA0096 major facilitator superfamily proteinSubName: Full=Major facilitator superfamily protein; pDV CDS129163 1212 + 0.667492
NA DVUA0081 glycosyl transferase, group 1/2 family proteinSubName: Full=Glycosyl transferase, group 1/2 family protein; pDV CDS107247 2115 + 0.649645
NA DVUA0055 membrane protein, putativeSubName: Full=Membrane protein, putative; pDV CDS66969 954 + 0.672956
NA DvrnpB2 RNase P, RNA component pDV misc_RNA190003 435 - 0.751724
NA DVUA0018 hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS22463 189 - 0.417989
NA DVUA0138 sensor histidine kinaseSubName: Full=Sensor histidine kinase; pDV CDS179417 2085 - 0.639808
NA DVUA0004 DNA-binding protein HU, putativeSubName: Full=DNA-binding protein HU, putative; pDV CDS5490 354 + 0.641243
NA DVUA0027 hypothetical proteinSubName: Full=Uncharacterized protein; pDV CDS31459 111 - 0.414414
cas1 DVUA0134 CRISPR-associated protein Cas1RecName: Full=CRISPR-associated endonuclease Cas1; EC=3.1.-.-; pDV CDS174393 1032 + 0.629845
cas3 DVUA0129 CRISPR-associated helicase Cas3 domain proteinSubName: Full=CRISPR-associated helicase Cas3 domain protein; pDV CDS168254 2109 + 0.649123
chrB DVUA0094 chrB proteinSubName: Full=ChrB protein; pDV CDS127186 1005 - 0.684577
cysC DVUA0079 adenylylsulfate kinaseRecName: Full=Adenylyl-sulfate kinase; EC=2.7.1.25; AltName: Full=APS kinase; AltName: Full=ATP adenosine-5-phosphosulfate 3-phosphotransferase; AltName: Full=Adenosine-5-phosphosulfate kinase; pDV CDS105582 687 + 0.58952
escJ DVUA0117 type III secretion lipoproteinSubName: Full=Type III secretion lipoprotein; pDV CDS154970 816 + 0.669118
escT DVUA0102 type III secretion inner membrane proteinSubName: Full=Type III secretion inner membrane protein; pDV CDS138924 816 - 0.655637
glnB-2 DVUA0013 nitrogen regulatory protein P-IISubName: Full=Nitrogen regulatory protein P-II; pDV CDS17863 396 - 0.664141
glnB-3 DVUA0014 nitrogen regulatory protein P-IISubName: Full=Nitrogen regulatory protein P-II; pDV CDS18268 327 - 0.608563
invX DVUA0103 type III secretion protein, HrpO familySubName: Full=Type III secretion protein, HrpO family; pDV CDS139746 261 - 0.574713
katA DVUA0091 catalaseRecName: Full=Catalase; EC=1.11.1.6; pDV CDS123495 1458 + 0.642661
nifA-2 DVUA0143 Nif-specific regulatory proteinSubName: Full=Nif-specific regulatory protein; pDV CDS184786 1548 - 0.681525
nifB DVUA0007 nitrogenase cofactor biosynthesis protein NifBSubName: Full=Nitrogenase cofactor biosynthesis protein NifB; pDV CDS8901 1545 - 0.699029
nifD DVUA0012 nitrogenase molybdenum-iron protein alpha chainRecName: Full=Nitrogenase protein alpha chain; EC=1.18.6.1; pDV CDS16223 1629 - 0.636587
nifH DVUA0015 nitrogenase iron proteinRecName: Full=Nitrogenase iron protein; EC=1.18.6.1; AltName: Full=Nitrogenase Fe protein; AltName: Full=Nitrogenase component II; AltName: Full=Nitrogenase reductase; pDV CDS18877 834 - 0.641487
nifK DVUA0011 nitrogenase molybdenum-iron protein beta chainSubName: Full=Nitrogenase molybdenum-iron protein beta chain; EC=1.18.6.1; pDV CDS14801 1386 - 0.657287
zupT DVUA0136 zinc transporterRecName: Full=Zinc transporter ZupT; pDV CDS177828 834 - 0.623501