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2024-05-19 10:56:51

Gene list

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Genomic element: pCD1

Number of genes found: 158

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Yersinia pestis biovar Medievalis str. 91001, 91001
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA pCD59 hypothetical proteinSubName: Full=Uncharacterized protein; pCD1 CDS42691 210 + 0.428571
NA pCD16 hypothetical proteinSubName: Full=O68; SubName: Full=Uncharacterized protein; SubName: Full=YPCD1.68c protein; pCD1 CDS11858 207 + 0.608696
NA pCD98 hypothetical proteinSubName: Full=Uncharacterized protein; pCD1 CDS69803 324 + 0.487654
NA pCD79 pCD1 misc_feature56041 255 + 0.384314
NA pCD77 pCD1 pseudo55453 204 + 0.47549
NA pCD12 hypothetial proteinSubName: Full=Hypothetial protein; SubName: Full=Uncharacterized protein; pCD1 CDS6747 450 + 0.451111
NA pCD02 putative ATP-binding proteinSubName: Full=ATP-binding protein; SubName: Full=IS transposase; SubName: Full=Insertion sequence IS100, ATP-binding protein; SubName: Full=Putative ATP-binding protein; SubName: Full=Putative IS100 transposase; SubName: Full=Putative transposase; SubName: Full=Putative transposase ATP-binding protein; SubName: Full=Putative transposase C end of IS100 transframe protein; SubName: Full=Putative transposase-orf2 protein; SubName: Full=Uncharacterized protein; pCD1 CDS1106 783 + 0.50447
NA pCD04 possible transposaseSubName: Full=Possible transposase; pCD1 CDS2229 405 - 0.516049
NA pCD76 hypothetical proteinSubName: Full=Uncharacterized protein; pCD1 CDS54686 249 + 0.502008
NA pCD61 pCD1 pseudo44440 216 - 0.412037
NA pCD09 hypothetical proteinSubName: Full=Uncharacterized protein; pCD1 CDS5416 219 - 0.488584
NA pCD1 rep_origin4760 151 + 0.357616
NA pCD72 hypothetical proteinSubName: Full=Transposase; SubName: Full=Uncharacterized protein; pCD1 CDS50846 459 + 0.553377
NA pCD96 pCD1 pseudo68841 294 - 0.503401
NA pCD10 hypothetical proteinSubName: Full=Uncharacterized protein; pCD1 CDS5934 243 + 0.539095
NA pCD79 putative plasmid stabilization element ParESubName: Full=ParE toxin protein; SubName: Full=Putative plasmid stabilization element ParE; SubName: Full=Uncharacterized protein; pCD1 CDS56035 300 + 0.38
NA pCD94 pCD1 pseudo66226 381 - 0.509186
NA pCD11 pCD1 pseudo6149 303 + 0.508251
NA pCD84 hypothetical proteinSubName: Full=Uncharacterized protein; pCD1 CDS58463 216 - 0.49537
NA pCD86 pCD1 pseudo59701 432 + 0.569444
NA pCD71 hypothetical proteinSubName: Full=Uncharacterized protein; pCD1 CDS50499 324 + 0.481481
NA pCD73 pCD1 pseudo51413 198 + 0.5
NA pCD80 hypothetical proteinSubName: Full=Uncharacterized protein; pCD1 CDS56176 297 - 0.373737
NA pCD62 hypothetical proteinSubName: Full=Transposase; SubName: Full=Uncharacterized protein; pCD1 CDS44639 120 - 0.475
NA pCD90 hypothetical proteinSubName: Full=Uncharacterized protein; pCD1 CDS62248 330 - 0.281818
NA pCD83 IS1222-like transposaseSubName: Full=IS1222-like transposase; SubName: Full=Possible transposase remnant; pCD1 CDS57782 498 - 0.53012
NA pCD80 pCD1 misc_feature56401 54 - 0.37037
NA pCD1 misc_RNA3549 75 + 0.48
NA pCD80 pCD1 misc_feature56290 69 - 0.362319
NA pCD58 pCD1 pseudo42556 156 - 0.467949
NA pCD57 hypothetical proteinSubName: Full=Transposase; SubName: Full=Uncharacterized protein; pCD1 CDS42199 324 - 0.388889
NA pCD65 hypothetical proteinSubName: Full=Uncharacterized protein; pCD1 CDS46324 390 + 0.276923
NA pCD78 hypothetical proteinRecName: Full=Antitoxin ParD; pCD1 CDS55767 276 + 0.431159
NA pCD69 pCD1 pseudo49309 246 + 0.49187
NA pCD1 misc_feature3711 879 + 0.5438
NA pCD97 hypothetical proteinSubName: Full=Putative DNA helicase; SubName: Full=Uncharacterized protein; pCD1 CDS69146 492 + 0.554878
NA pCD15 putative transposase proteinSubName: Full=Putative transposase protein; pCD1 CDS11250 537 - 0.49162
NA pCD88 putative transposaseSubName: Full=Putative transposase; pCD1 CDS61049 810 - 0.504938
NA pCD56 pCD1 pseudo42033 132 - 0.462121
NA pCD03 hypothetical proteinSubName: Full=Uncharacterized protein; pCD1 CDS1959 399 + 0.538847
NA pCD63 pCD1 pseudo44914 192 + 0.458333
NA pCD85 probable transposaseSubName: Full=Probable transposase; pCD1 CDS58682 1020 + 0.552941
NA pCD91 hypothetical proteinSubName: Full=Uncharacterized protein; pCD1 CDS62716 465 - 0.301075
NA pCD64 hypothetical proteinSubName: Full=Uncharacterized protein; pCD1 CDS45633 420 - 0.388095
NA pCD05 endonuclease-like proteinSubName: Full=Endonuclease; SubName: Full=Endonuclease-like protein; pCD1 CDS2654 369 + 0.487805
NA pCD89 putative transposaseSubName: Full=Putative IS1617 transposase; SubName: Full=Putative transposase; SubName: Full=Transposase; pCD1 CDS61882 267 - 0.479401
NA pCD89 pCD1 misc_feature61888 141 - 0.51773
IS100 pCD1 repeat_region1 1954 + 0.51433
IS1222 pCD1 repeat_region57753 675 - 0.546667
IS1635 pCD1 repeat_region46022 333 - 0.435435
IS1635 pCD1 repeat_region41929 707 - 0.417256
IS1635 pCD1 repeat_region44887 266 + 0.447368
IS21 pCD1 repeat_region58432 1667 + 0.55129
IS285 pCD1 repeat_region13939 305 + 0.47541
ORFA pCD20 putative transposase ORFARecName: Full=Low calcium response locus protein S; pCD1 CDS15028 267 - 0.434457
ORFA pCD20 pCD1 misc_feature15034 141 - 0.404255
ORFB pCD19 putative transposaseRecName: Full=Low calcium response locus protein T; pCD1 CDS14570 435 - 0.455172
ORFC pCD18 putative transposaseSubName: Full=Putative transposase; pCD1 CDS14265 309 - 0.459547
lcrG pCD51 probable Yop regulator LcrGRecName: Full=Low calcium response locus protein G; pCD1 CDS37671 288 + 0.46875
lcrR pCD50 hypothetical protein LcrRRecName: Full=Low calcium response locus protein R; pCD1 CDS37189 441 + 0.489796
lcrV pCD52 V antigen LcrVRecName: Full=Virulence-associated V antigen; AltName: Full=Low calcium response locus protein V; pCD1 CDS37960 975 + 0.377436
repA pCD08 replication protein RepA-like proteinSubName: Full=Putative replication initiation protein; SubName: Full=Replication protein; SubName: Full=Replication protein RepA-like protein; pCD1 CDS3723 867 + 0.542099
repA pCD08 pCD1 misc_feature4236 315 + 0.55873
repB pCD06 replication protein RepB-like proteinSubName: Full=Putative replication transcriptional regulator; SubName: Full=Replication protein; SubName: Full=Replication protein RepB homolog; SubName: Full=Replication protein RepB-like protein; pCD1 CDS3160 255 + 0.423529
sopA pCD74 putative plasmid partitioning transcription repressorSubName: Full=Putative plasmid partitioning transcription repressor; pCD1 CDS52458 1119 + 0.440572
sopB pCD75 putative plasmid partitioning control proteinSubName: Full=Putative plasmid partitioning control protein; pCD1 CDS53561 978 + 0.4182
sycD pCD53 putative yopB/yopD chaperone SycDRecName: Full=Low calcium response locus protein H; pCD1 CDS38937 507 + 0.441815
sycE pCD82 putative yopE chaperone SycERecName: Full=YopE regulator; pCD1 CDS57327 393 + 0.409669
sycH pCD87 putative yopH targeting protein SycHSubName: Full=Putative yopH targeting protein; SubName: Full=Putative yopH targeting protein SycH; SubName: Full=YopH chaperone; SubName: Full=YopH chaperone SycH protein homolog; pCD1 CDS60476 426 + 0.41784
sycN pCD46 putative type III secretion protein SycNRecName: Full=Chaperone protein SycN; pCD1 CDS34014 372 + 0.526882
sycT pCD66 putative yopT chaperone SycTRecName: Full=Chaperone protein SycT; pCD1 CDS46757 399 - 0.411028
tap pCD07 putative repA translation proteinSubName: Full=Putative repA translation protein; SubName: Full=RepA translation protein; pCD1 CDS3656 75 + 0.44
tnp pCD01 putative transposaseSubName: Full=IS transposase; SubName: Full=ORF 78; SubName: Full=ORF12; SubName: Full=Putative transposase; SubName: Full=Putative transposase, N end of IS100 transframe protein; SubName: Full=Putative transposase-orf1 protein; SubName: Full=Transposase; SubName: Full=Transposase for insertion sequence IS100; pCD1 CDS87 1023 + 0.527859
tnpA pCD93 putative transposaseSubName: Full=Putative transposase; SubName: Full=Transposase (Tn1000) homolog; pCD1 CDS63914 2316 + 0.519862
tnpR pCD92 pCD1 misc_feature63748 69 - 0.275362
tnpR pCD92 putative resolvaseSubName: Full=Putative resolvase; pCD1 CDS63199 636 - 0.446541
tyeA pCD45 Yop secretion and targeting control protein TyeARecName: Full=Protein TyeA; pCD1 CDS33749 279 + 0.433692
virF pCD34 putative thermoregulatory protein VirFRecName: Full=Thermoregulatory protein LcrF; pCD1 CDS23948 816 - 0.416667
virG pCD35 putative Yop targeting lipoprotein VirGSubName: Full=Pre-lipoprotein VirG homolog; SubName: Full=Putative Yop targeting lipoprotein; SubName: Full=Putative Yop targeting lipoprotein VirG; SubName: Full=YscC lipoprotein chaperone; pCD1 CDS24887 396 - 0.444444
yadA pCD95 pCD1 pseudo67203 1313 + 0.431836
ylpA pCD70 pCD1 pseudo49997 69 + 0.594203
ylpA pCD70 pCD1 pseudo49687 712 + 0.485955
ylpA pCD70 pCD1 pseudo50075 78 + 0.589744
yopB pCD54 pCD1 misc_feature39916 69 + 0.565217
yopB pCD54 putative Yop targeting protein YopBSubName: Full=Putative Yop targeting protein; SubName: Full=Putative Yop targeting protein YopB; SubName: Full=Type III secretion host injection protein; SubName: Full=Yop targeting protein; SubName: Full=YopB homolog; pCD1 CDS39421 1206 + 0.466833
yopB pCD54 pCD1 misc_feature40102 69 + 0.463768
yopD pCD55 putative Yop negative regulation/targeting component YopDSubName: Full=Putative Yop negative regulation/targeting component; SubName: Full=Putative Yop negative regulation/targeting component YopD; SubName: Full=Type III secretion host injection and negative regulator protein; SubName: Full=Yop targeting negative regulator; SubName: Full=YopD homolog; pCD1 CDS40645 921 + 0.431053
yopE pCD81 putative outer membrane virulence protein YopERecName: Full=Outer membrane virulence protein YopE; pCD1 CDS56474 660 - 0.510606
yopH pCD17 putative protein-tyrosine phosphatase Yop effector YopHSubName: Full=Targeted effector protein; SubName: Full=Type III secretion injected virulence protein; SubName: Full=Uncharacterized protein; SubName: Full=YopH; pCD1 CDS12347 1407 + 0.474058
yopJ pCD14 putative targeted effector protein YopJSubName: Full=Putative targeted effector protein YopJ; pCD1 CDS9798 867 + 0.346021
yopM pCD60 pCD1 misc_feature44056 60 + 0.366667
yopM pCD60 pCD1 misc_feature43570 54 + 0.388889
yopM pCD60 pCD1 misc_feature44176 60 + 0.416667
yopM pCD60 pCD1 misc_feature43624 60 + 0.366667
yopM pCD60 pCD1 misc_feature43744 60 + 0.3
yopM pCD60 pCD1 misc_feature43582 675 + 0.379259
yopM pCD60 pCD1 misc_feature43996 60 + 0.316667
yopM pCD60 pCD1 misc_feature43870 60 + 0.35
yopM pCD60 pCD1 misc_feature43684 60 + 0.366667
yopM pCD60 pCD1 misc_feature43810 60 + 0.433333
yopM pCD60 pCD1 misc_feature44236 60 + 0.466667
yopM pCD60 pCD1 misc_feature44116 60 + 0.4
yopM pCD60 putative targeted effector protein YopMRecName: Full=Outer membrane protein YopM; pCD1 CDS43294 1104 + 0.39221
yopM pCD60 pCD1 misc_feature44296 60 + 0.416667
yopM pCD60 pCD1 misc_feature43936 60 + 0.4
yopN pCD44 putative membrane-bound Yop targeting protein YopNRecName: Full=Outer membrane protein YopN; AltName: Full=LcrE; AltName: Full=Yop4b; pCD1 CDS32887 882 + 0.460317
yopQ pCD68 putative virulence determinant protein YopQSubName: Full=Putative virulence determinant protein YopQ; pCD1 CDS48608 564 + 0.336879
yopT pCD67 putative cytotoxic effector protein YopTRecName: Full=Cysteine protease YopT; EC=3.4.22.-; pCD1 CDS47155 969 - 0.431373
ypkA pCD13 putative targeted effector protein kinase YpkARecName: Full=Protein kinase YpkA; Short=Protein kinase A; EC=2.7.11.1; AltName: Full=Targeted effector protein kinase; Flags: Precursor; pCD1 CDS7204 2199 + 0.481583
yscA pCD33 hypothetical protein YscARecName: Full=Yop proteins translocation protein A; pCD1 CDS23771 99 - 0.313131
yscB pCD32 hypothetical proteinRecName: Full=Chaperone protein YscB; AltName: Full=Yop proteins translocation protein B; pCD1 CDS23132 414 - 0.417874
yscC pCD31 putative type III secretion protein YscCSubName: Full=KIM5; SubName: Full=Putative type III secretion protein; SubName: Full=Putative type III secretion protein YscC; SubName: Full=Type III secretion outermembrane pore forming protein; SubName: Full=Type III secretion protein; SubName: Full=Yop proteins translocation protein C homolog; pCD1 CDS21303 1824 - 0.454496
yscD pCD30 putative type III secretion protein YscDSubName: Full=Putative type III secretion protein; SubName: Full=Putative type III secretion protein YscD; SubName: Full=Type III secretion protein; SubName: Full=Yop proteins translocation protein D homolog; pCD1 CDS20047 1260 - 0.46746
yscD pCD30 pCD1 misc_feature20869 69 - 0.449275
yscE pCD29 putative type III secretion protein YscESubName: Full=Putative type III secretion protein; SubName: Full=Putative type III secretion protein YscE; SubName: Full=Type III secretion protein; SubName: Full=Yop proteins translocation protein E homolog; pCD1 CDS19850 201 - 0.422886
yscF pCD28 putative type III secretion protein YscFSubName: Full=Putative type III secretion protein; SubName: Full=Putative type III secretion protein YscF; SubName: Full=Type III secretion cytoplasmic protein; SubName: Full=Type III secretion protein; SubName: Full=Yop proteins translocation protein F homolog; pCD1 CDS19586 264 - 0.416667
yscG pCD27 putative type III secretion protein YscGSubName: Full=Putative type III secretion protein; SubName: Full=Putative type III secretion protein YscG; SubName: Full=Type III secretion protein; SubName: Full=Type III secretion spans bacterial envelope protein; SubName: Full=Yop proteins translocation protein G homolog; pCD1 CDS19237 348 - 0.439655
yscH pCD26 putative type III secretion protein YscHRecName: Full=Yop proteins translocation protein H; AltName: Full=Low calcium response locus protein P; pCD1 CDS18743 498 - 0.429719
yscI pCD25 putative type III secretion protein YscIRecName: Full=Yop proteins translocation protein I; AltName: Full=Low calcium response locus protein O; pCD1 CDS18395 348 - 0.468391
yscJ pCD24 putative type III secretion lipoprotein YscJRecName: Full=Yop proteins translocation lipoprotein J; AltName: Full=Lipoprotein YlpB; AltName: Full=Low calcium response locus protein KA; Flags: Precursor; pCD1 CDS17654 735 - 0.428571
yscJ pCD24 pCD1 misc_feature17671 67 - 0.373134
yscK pCD23 putative type III secretion protein YscKRecName: Full=Yop proteins translocation protein K; AltName: Full=Low calcium response locus protein KB; pCD1 CDS17025 651 - 0.483871
yscL pCD22 putative typee III secretion protein YscLRecName: Full=Yop proteins translocation protein L; AltName: Full=Low calcium response locus protein KC; pCD1 CDS16414 666 - 0.447447
yscM pCD21 putative type III secretion regulatory protein YscMRecName: Full=Yop proteins translocation protein M; AltName: Full=Low calcium response locus protein Q; pCD1 CDS15842 348 - 0.479885
yscN pCD43 putative Yops secretion ATP synthase YscNSubName: Full=Putative Yops secretion ATP synthase; SubName: Full=Putative Yops secretion ATP synthase YscN; SubName: Full=Yops secretion ATPase YscN homolog; SubName: Full=Yops secretion protein; pCD1 CDS31370 1320 - 0.508333
yscO pCD42 putative type III secretion protein YscOSubName: Full=Putative type III secretion protein; SubName: Full=Putative type III secretion protein YscO; SubName: Full=Type III secretion protein; SubName: Full=Type III secretion spans bacterial envelope protein; SubName: Full=Yop proteins translocation protein O; SubName: Full=YscO; pCD1 CDS30909 465 - 0.458065
yscP pCD41 putative type III secretion protein YscPRecName: Full=Yop proteins translocation protein P; pCD1 CDS29542 1368 - 0.486842
yscQ pCD40 putative type III secretion protein YscQRecName: Full=Yop proteins translocation protein Q; pCD1 CDS28622 924 - 0.481602
yscR pCD39 pCD1 misc_feature28407 69 - 0.478261
yscR pCD39 pCD1 misc_feature28533 69 - 0.391304
yscR pCD39 pCD1 misc_feature28083 69 - 0.362319
yscR pCD39 putative Yop secretion membrane protein YscRRecName: Full=Yop proteins translocation protein R; pCD1 CDS27972 654 - 0.43578
yscS pCD38 type III secretion protein yscS YscSRecName: Full=Yop proteins translocation protein S; pCD1 CDS27704 267 - 0.453184
yscS pCD38 pCD1 misc_feature27761 69 - 0.521739
yscS pCD38 pCD1 misc_feature27866 69 - 0.536232
yscT pCD37 putative type III secretion protein YscTRecName: Full=Yop proteins translocation protein T; pCD1 CDS26922 786 - 0.428753
yscT pCD37 pCD1 misc_feature27411 69 - 0.463768
yscT pCD37 pCD1 misc_feature27246 69 - 0.42029
yscT pCD37 pCD1 misc_feature27615 66 - 0.393939
yscT pCD37 pCD1 misc_feature27537 60 - 0.45
yscT pCD37 pCD1 misc_feature27000 69 - 0.449275
yscT pCD37 pCD1 misc_feature27102 69 - 0.391304
yscU pCD36 pCD1 misc_feature26773 69 - 0.492754
yscU pCD36 pCD1 misc_feature26449 69 - 0.347826
yscU pCD36 pCD1 misc_feature26299 69 - 0.42029
yscU pCD36 pCD1 misc_feature26620 69 - 0.42029
yscU pCD36 putative type III secretion protein YscURecName: Full=Yop proteins translocation protein U; pCD1 CDS25858 1065 - 0.431925
yscV pCD49 putative membrane-bound Yop protein YscVRecName: Full=Low calcium response locus protein D; pCD1 CDS35078 2115 + 0.463357
yscV pCD49 pCD1 misc_feature35402 69 + 0.449275
yscV pCD49 pCD1 misc_feature35678 69 + 0.42029
yscV pCD49 pCD1 misc_feature35204 69 + 0.362319
yscV pCD49 pCD1 misc_feature35948 69 + 0.492754
yscV pCD49 pCD1 misc_feature35780 69 + 0.536232
yscV pCD49 pCD1 misc_feature35135 61 + 0.540984
yscV pCD49 pCD1 misc_feature35291 69 + 0.521739
yscX pCD47 putative type III secretion protein YscXRecName: Full=Yop proteins translocation protein X; pCD1 CDS34382 369 + 0.495935
yscY pCD48 pCD1 misc_feature34753 318 + 0.471698
yscY pCD48 putative type III secretion protein YscYRecName: Full=Chaperone protein YscY; AltName: Full=Yop proteins translocation protein Y; pCD1 CDS34747 345 + 0.46087