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2024-05-07 01:32:34

Gene list

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Genomic element: pCD1

Number of genes found: 158

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Yersinia pestis biovar Medievalis str. 91001, 91001
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA pCD61 pCD1 pseudo44440 216 - 0.412037
NA pCD72 hypothetical proteinpCD1 CDS50846 459 + 0.553377
NA pCD03 hypothetical proteinpCD1 CDS1959 399 + 0.538847
NA pCD90 hypothetical proteinpCD1 CDS62248 330 - 0.281818
NA pCD15 putative transposase proteinpCD1 CDS11250 537 - 0.49162
NA pCD58 pCD1 pseudo42556 156 - 0.467949
NA pCD77 pCD1 pseudo55453 204 + 0.47549
NA pCD11 pCD1 pseudo6149 303 + 0.508251
NA pCD04 possible transposasepCD1 CDS2229 405 - 0.516049
NA pCD80 pCD1 misc_feature56401 54 - 0.37037
NA pCD1 rep_origin4760 151 + 0.357616
NA pCD89 pCD1 misc_feature61888 141 - 0.51773
NA pCD89 putative transposasepCD1 CDS61882 267 - 0.479401
NA pCD69 pCD1 pseudo49309 246 + 0.49187
NA pCD88 putative transposasepCD1 CDS61049 810 - 0.504938
NA pCD1 misc_RNA3549 75 + 0.48
NA pCD05 endonuclease-like proteinpCD1 CDS2654 369 + 0.487805
NA pCD86 pCD1 pseudo59701 432 + 0.569444
NA pCD63 pCD1 pseudo44914 192 + 0.458333
NA pCD12 hypothetial proteinpCD1 CDS6747 450 + 0.451111
NA pCD10 hypothetical proteinpCD1 CDS5934 243 + 0.539095
NA pCD02 putative ATP-binding proteinpCD1 CDS1106 783 + 0.50447
NA pCD56 pCD1 pseudo42033 132 - 0.462121
NA pCD62 hypothetical proteinpCD1 CDS44639 120 - 0.475
NA pCD79 putative plasmid stabilization element ParEpCD1 CDS56035 300 + 0.38
NA pCD97 hypothetical proteinpCD1 CDS69146 492 + 0.554878
NA pCD73 pCD1 pseudo51413 198 + 0.5
NA pCD64 hypothetical proteinpCD1 CDS45633 420 - 0.388095
NA pCD76 hypothetical proteinpCD1 CDS54686 249 + 0.502008
NA pCD94 pCD1 pseudo66226 381 - 0.509186
NA pCD78 hypothetical proteinpCD1 CDS55767 276 + 0.431159
NA pCD83 IS1222-like transposasepCD1 CDS57782 498 - 0.53012
NA pCD84 hypothetical proteinpCD1 CDS58463 216 - 0.49537
NA pCD1 misc_feature3711 879 + 0.5438
NA pCD91 hypothetical proteinpCD1 CDS62716 465 - 0.301075
NA pCD57 hypothetical proteinpCD1 CDS42199 324 - 0.388889
NA pCD09 hypothetical proteinpCD1 CDS5416 219 - 0.488584
NA pCD96 pCD1 pseudo68841 294 - 0.503401
NA pCD65 hypothetical proteinpCD1 CDS46324 390 + 0.276923
NA pCD71 hypothetical proteinpCD1 CDS50499 324 + 0.481481
NA pCD85 probable transposasepCD1 CDS58682 1020 + 0.552941
NA pCD59 hypothetical proteinpCD1 CDS42691 210 + 0.428571
NA pCD80 hypothetical proteinpCD1 CDS56176 297 - 0.373737
NA pCD80 pCD1 misc_feature56290 69 - 0.362319
NA pCD98 hypothetical proteinpCD1 CDS69803 324 + 0.487654
NA pCD79 pCD1 misc_feature56041 255 + 0.384314
NA pCD16 hypothetical proteinpCD1 CDS11858 207 + 0.608696
IS100 pCD1 repeat_region1 1954 + 0.51433
IS1222 pCD1 repeat_region57753 675 - 0.546667
IS1635 pCD1 repeat_region44887 266 + 0.447368
IS1635 pCD1 repeat_region46022 333 - 0.435435
IS1635 pCD1 repeat_region41929 707 - 0.417256
IS21 pCD1 repeat_region58432 1667 + 0.55129
IS285 pCD1 repeat_region13939 305 + 0.47541
ORFA pCD20 pCD1 misc_feature15034 141 - 0.404255
ORFA pCD20 putative transposase ORFApCD1 CDS15028 267 - 0.434457
ORFB pCD19 putative transposasepCD1 CDS14570 435 - 0.455172
ORFC pCD18 putative transposasepCD1 CDS14265 309 - 0.459547
lcrG pCD51 probable Yop regulator LcrGpCD1 CDS37671 288 + 0.46875
lcrR pCD50 hypothetical protein LcrRpCD1 CDS37189 441 + 0.489796
lcrV pCD52 V antigen LcrVpCD1 CDS37960 975 + 0.377436
repA pCD08 pCD1 misc_feature4236 315 + 0.55873
repA pCD08 replication protein RepA-like proteinpCD1 CDS3723 867 + 0.542099
repB pCD06 replication protein RepB-like proteinpCD1 CDS3160 255 + 0.423529
sopA pCD74 putative plasmid partitioning transcription repressorpCD1 CDS52458 1119 + 0.440572
sopB pCD75 putative plasmid partitioning control proteinpCD1 CDS53561 978 + 0.4182
sycD pCD53 putative yopB/yopD chaperone SycDpCD1 CDS38937 507 + 0.441815
sycE pCD82 putative yopE chaperone SycEpCD1 CDS57327 393 + 0.409669
sycH pCD87 putative yopH targeting protein SycHpCD1 CDS60476 426 + 0.41784
sycN pCD46 putative type III secretion protein SycNpCD1 CDS34014 372 + 0.526882
sycT pCD66 putative yopT chaperone SycTpCD1 CDS46757 399 - 0.411028
tap pCD07 putative repA translation proteinpCD1 CDS3656 75 + 0.44
tnp pCD01 putative transposasepCD1 CDS87 1023 + 0.527859
tnpA pCD93 putative transposasepCD1 CDS63914 2316 + 0.519862
tnpR pCD92 pCD1 misc_feature63748 69 - 0.275362
tnpR pCD92 putative resolvasepCD1 CDS63199 636 - 0.446541
tyeA pCD45 Yop secretion and targeting control protein TyeApCD1 CDS33749 279 + 0.433692
virF pCD34 putative thermoregulatory protein VirFpCD1 CDS23948 816 - 0.416667
virG pCD35 putative Yop targeting lipoprotein VirGpCD1 CDS24887 396 - 0.444444
yadA pCD95 pCD1 pseudo67203 1313 + 0.431836
ylpA pCD70 pCD1 pseudo50075 78 + 0.589744
ylpA pCD70 pCD1 pseudo49997 69 + 0.594203
ylpA pCD70 pCD1 pseudo49687 712 + 0.485955
yopB pCD54 pCD1 misc_feature40102 69 + 0.463768
yopB pCD54 pCD1 misc_feature39916 69 + 0.565217
yopB pCD54 putative Yop targeting protein YopBpCD1 CDS39421 1206 + 0.466833
yopD pCD55 putative Yop negative regulation/targeting component YopDpCD1 CDS40645 921 + 0.431053
yopE pCD81 putative outer membrane virulence protein YopEpCD1 CDS56474 660 - 0.510606
yopH pCD17 putative protein-tyrosine phosphatase Yop effector YopHpCD1 CDS12347 1407 + 0.474058
yopJ pCD14 putative targeted effector protein YopJpCD1 CDS9798 867 + 0.346021
yopM pCD60 pCD1 misc_feature44176 60 + 0.416667
yopM pCD60 pCD1 misc_feature44056 60 + 0.366667
yopM pCD60 pCD1 misc_feature43582 675 + 0.379259
yopM pCD60 pCD1 misc_feature43996 60 + 0.316667
yopM pCD60 pCD1 misc_feature43810 60 + 0.433333
yopM pCD60 putative targeted effector protein YopMpCD1 CDS43294 1104 + 0.39221
yopM pCD60 pCD1 misc_feature43570 54 + 0.388889
yopM pCD60 pCD1 misc_feature43684 60 + 0.366667
yopM pCD60 pCD1 misc_feature44296 60 + 0.416667
yopM pCD60 pCD1 misc_feature43624 60 + 0.366667
yopM pCD60 pCD1 misc_feature43936 60 + 0.4
yopM pCD60 pCD1 misc_feature43744 60 + 0.3
yopM pCD60 pCD1 misc_feature43870 60 + 0.35
yopM pCD60 pCD1 misc_feature44116 60 + 0.4
yopM pCD60 pCD1 misc_feature44236 60 + 0.466667
yopN pCD44 putative membrane-bound Yop targeting protein YopNpCD1 CDS32887 882 + 0.460317
yopQ pCD68 putative virulence determinant protein YopQpCD1 CDS48608 564 + 0.336879
yopT pCD67 putative cytotoxic effector protein YopTpCD1 CDS47155 969 - 0.431373
ypkA pCD13 putative targeted effector protein kinase YpkApCD1 CDS7204 2199 + 0.481583
yscA pCD33 hypothetical protein YscApCD1 CDS23771 99 - 0.313131
yscB pCD32 hypothetical proteinpCD1 CDS23132 414 - 0.417874
yscC pCD31 putative type III secretion protein YscCpCD1 CDS21303 1824 - 0.454496
yscD pCD30 putative type III secretion protein YscDpCD1 CDS20047 1260 - 0.46746
yscD pCD30 pCD1 misc_feature20869 69 - 0.449275
yscE pCD29 putative type III secretion protein YscEpCD1 CDS19850 201 - 0.422886
yscF pCD28 putative type III secretion protein YscFpCD1 CDS19586 264 - 0.416667
yscG pCD27 putative type III secretion protein YscGpCD1 CDS19237 348 - 0.439655
yscH pCD26 putative type III secretion protein YscHpCD1 CDS18743 498 - 0.429719
yscI pCD25 putative type III secretion protein YscIpCD1 CDS18395 348 - 0.468391
yscJ pCD24 putative type III secretion lipoprotein YscJpCD1 CDS17654 735 - 0.428571
yscJ pCD24 pCD1 misc_feature17671 67 - 0.373134
yscK pCD23 putative type III secretion protein YscKpCD1 CDS17025 651 - 0.483871
yscL pCD22 putative typee III secretion protein YscLpCD1 CDS16414 666 - 0.447447
yscM pCD21 putative type III secretion regulatory protein YscMpCD1 CDS15842 348 - 0.479885
yscN pCD43 putative Yops secretion ATP synthase YscNpCD1 CDS31370 1320 - 0.508333
yscO pCD42 putative type III secretion protein YscOpCD1 CDS30909 465 - 0.458065
yscP pCD41 putative type III secretion protein YscPpCD1 CDS29542 1368 - 0.486842
yscQ pCD40 putative type III secretion protein YscQpCD1 CDS28622 924 - 0.481602
yscR pCD39 putative Yop secretion membrane protein YscRpCD1 CDS27972 654 - 0.43578
yscR pCD39 pCD1 misc_feature28407 69 - 0.478261
yscR pCD39 pCD1 misc_feature28083 69 - 0.362319
yscR pCD39 pCD1 misc_feature28533 69 - 0.391304
yscS pCD38 pCD1 misc_feature27761 69 - 0.521739
yscS pCD38 type III secretion protein yscS YscSpCD1 CDS27704 267 - 0.453184
yscS pCD38 pCD1 misc_feature27866 69 - 0.536232
yscT pCD37 pCD1 misc_feature27102 69 - 0.391304
yscT pCD37 pCD1 misc_feature27411 69 - 0.463768
yscT pCD37 pCD1 misc_feature27615 66 - 0.393939
yscT pCD37 pCD1 misc_feature27246 69 - 0.42029
yscT pCD37 putative type III secretion protein YscTpCD1 CDS26922 786 - 0.428753
yscT pCD37 pCD1 misc_feature27000 69 - 0.449275
yscT pCD37 pCD1 misc_feature27537 60 - 0.45
yscU pCD36 putative type III secretion protein YscUpCD1 CDS25858 1065 - 0.431925
yscU pCD36 pCD1 misc_feature26773 69 - 0.492754
yscU pCD36 pCD1 misc_feature26449 69 - 0.347826
yscU pCD36 pCD1 misc_feature26299 69 - 0.42029
yscU pCD36 pCD1 misc_feature26620 69 - 0.42029
yscV pCD49 pCD1 misc_feature35291 69 + 0.521739
yscV pCD49 pCD1 misc_feature35948 69 + 0.492754
yscV pCD49 pCD1 misc_feature35135 61 + 0.540984
yscV pCD49 pCD1 misc_feature35204 69 + 0.362319
yscV pCD49 putative membrane-bound Yop protein YscVpCD1 CDS35078 2115 + 0.463357
yscV pCD49 pCD1 misc_feature35402 69 + 0.449275
yscV pCD49 pCD1 misc_feature35780 69 + 0.536232
yscV pCD49 pCD1 misc_feature35678 69 + 0.42029
yscX pCD47 putative type III secretion protein YscXpCD1 CDS34382 369 + 0.495935
yscY pCD48 putative type III secretion protein YscYpCD1 CDS34747 345 + 0.46087
yscY pCD48 pCD1 misc_feature34753 318 + 0.471698