Gene list
Applied filters:
Genomic element: pDC3000A
Number of genes found: 67
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Pseudomonas syringae pv. tomato str. DC3000, DC3000 | |||||||||
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Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | PSPTOA0008 | partion protein, ParB family | SubName: Full=Partion protein, ParB family; | pDC3000A | CDS | 8252 | 885 | - | 0.467797 |
NA | PSPTOA0045 | type IV pilus biogenesis protein | SubName: Full=Type IV pilus biogenesis protein; | pDC3000A | CDS | 44550 | 1182 | + | 0.586294 |
NA | PSPTOA0068 | conjugal transfer protein, TraG/TraD family | SubName: Full=Conjugal transfer protein, TraG/TraD family; | pDC3000A | CDS | 69369 | 2289 | + | 0.601573 |
NA | PSPTOA0046 | hypothetical protein | SubName: Full=Uncharacterized protein; | pDC3000A | CDS | 46304 | 210 | + | 0.571429 |
NA | PSPTOA0065 | exclusion-determining protein, putative | SubName: Full=Exclusion-determining protein, putative; | pDC3000A | CDS | 66269 | 651 | + | 0.517665 |
NA | PSPTOA0030 | glycosyl hydrolase, family 25 | SubName: Full=Glycosyl hydrolase, family 25; | pDC3000A | CDS | 30218 | 624 | - | 0.411859 |
NA | PSPTOA0029 | relaxase/mobilization nuclease MobA, putative | SubName: Full=Relaxase/mobilization nuclease MobA, putative; | pDC3000A | CDS | 27739 | 1953 | + | 0.548387 |
NA | PSPTOA0026 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | pDC3000A | CDS | 26414 | 189 | + | 0.52381 |
NA | PSPTOA0071 | transcriptional regulator, GntR family | SubName: Full=Transcriptional regulator, GntR family; | pDC3000A | CDS | 72879 | 429 | + | 0.582751 |
NA | PSPTOA0004 | site-specific recombinase, phage integrase family | SubName: Full=Site-specific recombinase, phage integrase family; | pDC3000A | CDS | 2530 | 1011 | + | 0.581602 |
NA | PSPTOA0047 | endonuclease | SubName: Full=Endonuclease; | pDC3000A | CDS | 46510 | 552 | + | 0.599638 |
NA | PSPTOA0011 | resolvase, putative | SubName: Full=Resolvase, putative; | pDC3000A | CDS | 14315 | 546 | + | 0.540293 |
NA | PSPTOA0036 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | pDC3000A | CDS | 38204 | 1194 | + | 0.484925 |
NA | PSPTOA0038 | hypothetical protein | SubName: Full=Uncharacterized protein; | pDC3000A | CDS | 40825 | 186 | + | 0.403226 |
NA | PSPTOA0035 | transcriptional regulator, GntR family | SubName: Full=Transcriptional regulator, GntR family; | pDC3000A | CDS | 37434 | 702 | + | 0.51567 |
NA | PSPTOA0043 | traH protein, putative | SubName: Full=TraH protein, putative; | pDC3000A | CDS | 43283 | 474 | + | 0.618143 |
NA | PSPTOA0058 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | pDC3000A | CDS | 57568 | 201 | - | 0.567164 |
NA | PSPTOA0009 | ATPase, ParA family | SubName: Full=ATPase, ParA family; | pDC3000A | CDS | 9357 | 1128 | - | 0.482269 |
NA | PSPTOA0031 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | pDC3000A | CDS | 31647 | 1182 | - | 0.505076 |
NA | PSPTOA0014 | ATPase, ParA family | SubName: Full=ATPase, ParA family; | pDC3000A | CDS | 17627 | 630 | + | 0.547619 |
NA | PSPTOA0041 | lipoprotein, putative | SubName: Full=Lipoprotein, putative; | pDC3000A | CDS | 42480 | 273 | + | 0.611722 |
NA | PSPTOA0027 | mobilization protein MobC, putative | SubName: Full=Mobilization protein MobC, putative; | pDC3000A | CDS | 26676 | 279 | - | 0.537634 |
NA | PSPTOA0013 | ISPsy4, transposase | SubName: Full=ISPsy4, transposase; | pDC3000A | CDS | 16332 | 1023 | - | 0.592375 |
NA | PSPTOA0033 | hypothetical protein | SubName: Full=Uncharacterized protein; | pDC3000A | CDS | 34296 | 399 | + | 0.556391 |
NA | PSPTOA0049 | DNA primase, putative | SubName: Full=DNA primase, putative; | pDC3000A | CDS | 47811 | 4170 | + | 0.604077 |
NA | PSPTOA0028 | mobilization protein MobB, putative | SubName: Full=Mobilization protein MobB, putative; | pDC3000A | CDS | 27399 | 330 | + | 0.506061 |
NA | PSPTOA0025 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | pDC3000A | CDS | 25520 | 837 | + | 0.561529 |
NA | PSPTOA0061 | hypothetical protein | SubName: Full=Uncharacterized protein; | pDC3000A | CDS | 61667 | 237 | + | 0.565401 |
NA | PSPTOA0021 | resolvase, putative | SubName: Full=Resolvase, putative; | pDC3000A | CDS | 23291 | 666 | - | 0.557057 |
NA | PSPTOA0024 | hypothetical protein | SubName: Full=Uncharacterized protein; | pDC3000A | CDS | 25096 | 378 | + | 0.555556 |
NA | PSPTOA0015 | conserved hypothetical protein | SubName: Full=Plasmid partition protein ParB, truncated; | pDC3000A | CDS | 18277 | 219 | + | 0.502283 |
NA | PSPTOA0022 | hypothetical protein | SubName: Full=Uncharacterized protein; | pDC3000A | CDS | 24081 | 582 | + | 0.541237 |
NA | PSPTOA0039 | transcriptional regulator, PbsX family | SubName: Full=Transcriptional regulator, PbsX family; | pDC3000A | CDS | 41032 | 336 | - | 0.458333 |
NA | PSPTOA0057 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | pDC3000A | CDS | 57315 | 276 | - | 0.568841 |
NA | PSPTOA0010 | transposase, Tn3 family | SubName: Full=Transposase, Tn3 family; | pDC3000A | CDS | 11224 | 2970 | - | 0.549832 |
NA | PSPTOA0007 | membrane protein, putative | SubName: Full=Membrane protein, putative; | pDC3000A | CDS | 7782 | 474 | - | 0.506329 |
NA | PSPTOA0037 | major facilitator family transporter | SubName: Full=Major facilitator family transporter; | pDC3000A | CDS | 39438 | 1347 | + | 0.478842 |
NA | PSPTOA0069 | hypothetical protein | SubName: Full=Uncharacterized protein; | pDC3000A | CDS | 71685 | 423 | + | 0.513002 |
NA | PSPTOA0070 | hypothetical protein | SubName: Full=Uncharacterized protein; | pDC3000A | CDS | 72068 | 624 | + | 0.591346 |
NA | PSPTOA0034 | GGDEF domain/EAL domain protein | SubName: Full=GGDEF domain/EAL domain protein; | pDC3000A | CDS | 34863 | 1950 | - | 0.551795 |
NA | PSPTOA0040 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | pDC3000A | CDS | 41631 | 534 | + | 0.548689 |
NA | PSPTOA0023 | hypothetical protein | SubName: Full=Uncharacterized protein; | pDC3000A | CDS | 24612 | 351 | - | 0.652422 |
HopX1 | PSPTOA0012 | type III effector HopX1 | SubName: Full=Type III effector HopX1; | pDC3000A | CDS | 14914 | 1155 | - | 0.537662 |
hopAM1-1 | PSPTOA0005 | type III effector HopAM1-1 | SubName: Full=Type III effector HopAM1-1; SubName: Full=Type III effector HopAM1-2; | pDC3000A | CDS | 5731 | 831 | - | 0.397112 |
hopO1-1 | PSPTOA0018 | type III effector HopO1-1 | SubName: Full=Type III effector HopO1-1; | pDC3000A | CDS | 20399 | 852 | + | 0.464789 |
hopT1-1 | PSPTOA0019 | type III effector HopT1-1 | SubName: Full=Type III effector HopT1-1; | pDC3000A | CDS | 21259 | 1137 | + | 0.51803 |
lsc-3 | PSPTOA0032 | levansucrase | SubName: Full=Levansucrase; | pDC3000A | CDS | 32908 | 1296 | - | 0.555556 |
pilT | PSPTOA0042 | pilT protein | SubName: Full=PilT protein; | pDC3000A | CDS | 42755 | 492 | + | 0.589431 |
repA | PSPTOA0001 | replication protein RepA | SubName: Full=Replication protein RepA; | pDC3000A | CDS | 351 | 1314 | + | 0.609589 |
rulA | PSPTOA0002 | ultraviolet light resistance protein A | SubName: Full=Ultraviolet light resistance protein A; | pDC3000A | CDS | 1803 | 426 | + | 0.530516 |
shcO1 | PSPTOA0017 | type III chaperone ShcO1 | SubName: Full=Type III chaperone ShcO1; | pDC3000A | CDS | 19718 | 429 | + | 0.547786 |
traI | PSPTOA0044 | relaxase | SubName: Full=Relaxase; SubName: Full=TraI protein; | pDC3000A | CDS | 43753 | 801 | + | 0.600499 |
traK-2 | PSPTOA0048 | traK protein | SubName: Full=TraK protein; | pDC3000A | CDS | 47372 | 288 | + | 0.583333 |
traL-2 | PSPTOA0050 | traL protein | SubName: Full=TraL protein; | pDC3000A | CDS | 52006 | 354 | + | 0.601695 |
traM-2 | PSPTOA0051 | traM protein | SubName: Full=TraM protein; | pDC3000A | CDS | 52356 | 708 | + | 0.576271 |
traN-2 | PSPTOA0052 | traN protein | SubName: Full=TraN protein; | pDC3000A | CDS | 53120 | 1059 | + | 0.616619 |
traO-2 | PSPTOA0053 | traO protein | SubName: Full=TraO protein; | pDC3000A | CDS | 54184 | 1359 | + | 0.593083 |
traP-2 | PSPTOA0054 | traP protein | SubName: Full=TraP protein; | pDC3000A | CDS | 55584 | 666 | + | 0.599099 |
traQ-2 | PSPTOA0055 | traQ protein | SubName: Full=TraQ protein; | pDC3000A | CDS | 56258 | 543 | + | 0.59116 |
traR-2 | PSPTOA0056 | traR protein | SubName: Full=TraR protein; | pDC3000A | CDS | 56876 | 396 | + | 0.55303 |
traT | PSPTOA0059 | traT protein | SubName: Full=TraT protein; | pDC3000A | CDS | 57953 | 660 | + | 0.622727 |
traU-2 | PSPTOA0060 | traU protein | SubName: Full=TraU protein; | pDC3000A | CDS | 58596 | 3048 | + | 0.59416 |
traW-2 | PSPTOA0062 | traW protein | SubName: Full=TraW protein; | pDC3000A | CDS | 61946 | 1215 | + | 0.620576 |
traX-2 | PSPTOA0063 | traX protein | SubName: Full=TraX protein; | pDC3000A | CDS | 63150 | 603 | + | 0.583748 |
traY-2 | PSPTOA0064 | traY protein | SubName: Full=TraY protein; | pDC3000A | CDS | 63781 | 2145 | + | 0.566434 |
trbA | PSPTOA0066 | trbA protein | SubName: Full=TrbA protein; | pDC3000A | CDS | 67012 | 1200 | + | 0.589167 |
trbB | PSPTOA0067 | trbB protein | SubName: Full=TrbB protein; | pDC3000A | CDS | 68297 | 1086 | + | 0.60221 |