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2024-05-05 16:46:58

Gene list

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Genomic element: pDC3000A

Number of genes found: 67

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Pseudomonas syringae pv. tomato str. DC3000, DC3000
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA PSPTOA0039 transcriptional regulator, PbsX familypDC3000A CDS41032 336 - 0.458333
NA PSPTOA0031 conserved hypothetical proteinpDC3000A CDS31647 1182 - 0.505076
NA PSPTOA0058 conserved hypothetical proteinpDC3000A CDS57568 201 - 0.567164
NA PSPTOA0021 resolvase, putativepDC3000A CDS23291 666 - 0.557057
NA PSPTOA0027 mobilization protein MobC, putativepDC3000A CDS26676 279 - 0.537634
NA PSPTOA0043 traH protein, putativepDC3000A CDS43283 474 + 0.618143
NA PSPTOA0045 type IV pilus biogenesis proteinpDC3000A CDS44550 1182 + 0.586294
NA PSPTOA0065 exclusion-determining protein, putativepDC3000A CDS66269 651 + 0.517665
NA PSPTOA0013 ISPsy4, transposasepDC3000A CDS16332 1023 - 0.592375
NA PSPTOA0041 lipoprotein, putativepDC3000A CDS42480 273 + 0.611722
NA PSPTOA0023 hypothetical proteinpDC3000A CDS24612 351 - 0.652422
NA PSPTOA0025 conserved hypothetical proteinpDC3000A CDS25520 837 + 0.561529
NA PSPTOA0015 conserved hypothetical proteinpDC3000A CDS18277 219 + 0.502283
NA PSPTOA0047 endonucleasepDC3000A CDS46510 552 + 0.599638
NA PSPTOA0071 transcriptional regulator, GntR familypDC3000A CDS72879 429 + 0.582751
NA PSPTOA0010 transposase, Tn3 familypDC3000A CDS11224 2970 - 0.549832
NA PSPTOA0068 conjugal transfer protein, TraG/TraD familypDC3000A CDS69369 2289 + 0.601573
NA PSPTOA0024 hypothetical proteinpDC3000A CDS25096 378 + 0.555556
NA PSPTOA0029 relaxase/mobilization nuclease MobA, putativepDC3000A CDS27739 1953 + 0.548387
NA PSPTOA0040 conserved hypothetical proteinpDC3000A CDS41631 534 + 0.548689
NA PSPTOA0028 mobilization protein MobB, putativepDC3000A CDS27399 330 + 0.506061
NA PSPTOA0004 site-specific recombinase, phage integrase familypDC3000A CDS2530 1011 + 0.581602
NA PSPTOA0011 resolvase, putativepDC3000A CDS14315 546 + 0.540293
NA PSPTOA0046 hypothetical proteinpDC3000A CDS46304 210 + 0.571429
NA PSPTOA0037 major facilitator family transporterpDC3000A CDS39438 1347 + 0.478842
NA PSPTOA0030 glycosyl hydrolase, family 25pDC3000A CDS30218 624 - 0.411859
NA PSPTOA0026 conserved hypothetical proteinpDC3000A CDS26414 189 + 0.52381
NA PSPTOA0035 transcriptional regulator, GntR familypDC3000A CDS37434 702 + 0.51567
NA PSPTOA0036 conserved hypothetical proteinpDC3000A CDS38204 1194 + 0.484925
NA PSPTOA0033 hypothetical proteinpDC3000A CDS34296 399 + 0.556391
NA PSPTOA0069 hypothetical proteinpDC3000A CDS71685 423 + 0.513002
NA PSPTOA0034 GGDEF domain/EAL domain proteinpDC3000A CDS34863 1950 - 0.551795
NA PSPTOA0057 conserved hypothetical proteinpDC3000A CDS57315 276 - 0.568841
NA PSPTOA0061 hypothetical proteinpDC3000A CDS61667 237 + 0.565401
NA PSPTOA0049 DNA primase, putativepDC3000A CDS47811 4170 + 0.604077
NA PSPTOA0022 hypothetical proteinpDC3000A CDS24081 582 + 0.541237
NA PSPTOA0007 membrane protein, putativepDC3000A CDS7782 474 - 0.506329
NA PSPTOA0009 ATPase, ParA familypDC3000A CDS9357 1128 - 0.482269
NA PSPTOA0014 ATPase, ParA familypDC3000A CDS17627 630 + 0.547619
NA PSPTOA0070 hypothetical proteinpDC3000A CDS72068 624 + 0.591346
NA PSPTOA0038 hypothetical proteinpDC3000A CDS40825 186 + 0.403226
NA PSPTOA0008 partion protein, ParB familypDC3000A CDS8252 885 - 0.467797
HopX1 PSPTOA0012 type III effector HopX1pDC3000A CDS14914 1155 - 0.537662
hopAM1-1 PSPTOA0005 type III effector HopAM1-1pDC3000A CDS5731 831 - 0.397112
hopO1-1 PSPTOA0018 type III effector HopO1-1pDC3000A CDS20399 852 + 0.464789
hopT1-1 PSPTOA0019 type III effector HopT1-1pDC3000A CDS21259 1137 + 0.51803
lsc-3 PSPTOA0032 levansucrasepDC3000A CDS32908 1296 - 0.555556
pilT PSPTOA0042 pilT proteinpDC3000A CDS42755 492 + 0.589431
repA PSPTOA0001 replication protein RepApDC3000A CDS351 1314 + 0.609589
rulA PSPTOA0002 ultraviolet light resistance protein ApDC3000A CDS1803 426 + 0.530516
shcO1 PSPTOA0017 type III chaperone ShcO1pDC3000A CDS19718 429 + 0.547786
traI PSPTOA0044 relaxasepDC3000A CDS43753 801 + 0.600499
traK-2 PSPTOA0048 traK proteinpDC3000A CDS47372 288 + 0.583333
traL-2 PSPTOA0050 traL proteinpDC3000A CDS52006 354 + 0.601695
traM-2 PSPTOA0051 traM proteinpDC3000A CDS52356 708 + 0.576271
traN-2 PSPTOA0052 traN proteinpDC3000A CDS53120 1059 + 0.616619
traO-2 PSPTOA0053 traO proteinpDC3000A CDS54184 1359 + 0.593083
traP-2 PSPTOA0054 traP proteinpDC3000A CDS55584 666 + 0.599099
traQ-2 PSPTOA0055 traQ proteinpDC3000A CDS56258 543 + 0.59116
traR-2 PSPTOA0056 traR proteinpDC3000A CDS56876 396 + 0.55303
traT PSPTOA0059 traT proteinpDC3000A CDS57953 660 + 0.622727
traU-2 PSPTOA0060 traU proteinpDC3000A CDS58596 3048 + 0.59416
traW-2 PSPTOA0062 traW proteinpDC3000A CDS61946 1215 + 0.620576
traX-2 PSPTOA0063 traX proteinpDC3000A CDS63150 603 + 0.583748
traY-2 PSPTOA0064 traY proteinpDC3000A CDS63781 2145 + 0.566434
trbA PSPTOA0066 trbA proteinpDC3000A CDS67012 1200 + 0.589167
trbB PSPTOA0067 trbB proteinpDC3000A CDS68297 1086 + 0.60221