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# Rickettsia felis URRWXCal2, URRWXCal2; California 2

>RF_p16 Putative Zn-dependent protease
MKNKNYIQRSSMRLGEKEQKTYFKQGINFLDQGKYEKALQIFGMLLMGES
KNASFHYYKGNTLHKLKRYEEALESFKAAIKLKPWEGAYYYGLASSYYAV
GNGTEGLEALQKAVSVYGASEKIYHKHNMLAGFKRVEGGHQEMQLNVVAH
TAIESCSHLKQYAEVKVGDNYSFGFMR
>RF_p43 Putative conjugative transfer protein TraD_F
MLRITTYSSNSEFAKAFENTAVAGMINNSAPETSTGVQATLSKNIAALKH
LAPIRDFSIRQWCNDEENKSWLFLTALPSQRATLSPLLSAWISVALKSLM
SRDIGSTVENLWFIMDELPALGKINSLNTALAESRKYGGCFVAGIQNIFQ
LDKIYGSAAANDLLDLFNSKFIFRVGDQQTAHRSAMMLGEQEIRKTQESL
SYGSNTIRDGVNINTIEQKKMQVLPAEIMSLPNLSCFVKLAGHYPISKLK
MKWQN
>RF_p67 Transposase
MDYSYNFISLEASNVLRDWLLEFSFIYEITKNRYCANYGRPSIDPVLFFR
MQIISYLIW
>RF_p08 unknown
MAHIAKYKIDVIILGIDLEEVDGIKICTRLKQNPSTTYIPVVMIAEKEDT
DIRIQAFNAGADELITYPINIIVFTS
>RF_p15 unknown
MFKIARTVKQIYNAARNIPKSFLSSINNGLKYCSQSKGYVEDASEEFSFL
KAPRDQLSKDLIQDKFKAFKPNLQNLENLKSTQLLDSAEIRKLIYARFAD
EIAAKPSDTEENQNLETKSHATRGHVETFTTYNIADEFNDLREQGYNFKE
LRSAIINHNSSQQSENIEERNTSDNRSGKSLSQRMKELVVSGHISSYSGE
SGLKEEVEKVMHQKALVIEEFMQKVNERLGFVSVDNSVLLVDSENDEAGT
DATKTDLLGEY
>RF_p05 unknown
MQLFYPLGLPSENIGIHGFHDTTKNQPQSYIPITGCVLSHILSCSRLSSL
EKMYFILADSLICINSSKGRNRSIALPATSWAERLSCSKSKVFILQKSLE
DKGYFIIYRDKNDQGQNNRNTITTTIPDHVFSDLKYEPDRFNLNSDSDIE
TQSTNHSQSDNLDSIDKTFIPTLEGKRQHLAKTKMFIRVPYKFLKELNSN
CNISATSKVVLLHLFTKMYKSSVCKYDYNCFGSRYDYGNAVDYLTQNSNS
IVTSYQELQQELKLHRNSLTKALQTLETANLIKRGQIVIKNDNYYNSRAD
KSLWRISLVNALRITNDSTLHEQKGQIGYDEQEERFDKTQLLISTSNTTI
RTNDQKNDTGKNRVRESFSEKGCTKHDPPCTDSGQLYIKYFIVNNNINKN
IDYIDVKSEEEFLENELCSFPSESYNNSFKSSIKAKPSCSNTTSESAART
IKNTSEYKELRNFYPLSEQDVDTLNFRAGREFSNNFMNQLLLKLYIKYPE
KRFKNKFSFLSYMEKILKNEKHQGPLVNHTTFRFSCNIGAIEKNLLEYEK
YLNQIESSFDTSKDMQIRKKIAGRFSTNVAYEILKEVEFKTNNDNSFILA
LVPNQLALSERQIATLSEQLEAVYGINGYYVTVLEGDVNPEDVEYAERSR
GKKEIAIGVNNEMIYPKTAVFDNVENDTPIDIPASNSVVNTTNENTVWNQ
IRKGLREELGEAVDETWFSKAEAKECKETKTLTLTMPTRFMSDWVRNNYS
HVIRGLSEGYKINYKFKEVFKCHY
>RF_p06 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases
MPLLNERDVETRIEEQLKNLEWIDNPSLPNRNVYKQNPKTEKQRKALGSK
RPDYTLYRDNSDDPLIVIEAKRPNTNLSQALEQGNNYAKAINAPIVIATD
GIFAKTFHTKMQKPLFLDKEEISKIIQQSLAIEYIDKNEYFSIDEKVIKS
RDELLTIFKEINNQFKDAGVSRGLPRIELFCNLLFLKVITELVGTNSLIH
SLPDWCTWDKIKAKKGDDLWTFINTQAFDYLSF
>RF_p49 Integrase
MNLNQKIIKSKLGLLELAKSLGSISSACKAMGYSRDSYYRFKELYETGGE
EALYEISRRKPMS
>RF_p09 unknown
MSSLIHVTIITIILYVPKNKHITISDLSIYDGITLVPKSGVYSKMDETRV
FNKEAFETIELEINPPDTSSNASDDSDGISSTSDQLSSDSSSVLCSSCCS
SLDISDFLSSDDDMDLTGNNAADLANN
>RF_p04 unknown
MHKSKINPLVESKLSKTVAKIISEKPIEKSGFITSSNNKTTHYKTKTFRL
RQLDAENLIKIIKAVNHYNHRKTYSDSEVIRGLINFISDNLDTNIKKLTS
YINSSS
>RF_p02 unknown
MSPNPDFITIVKIANYFNCAVDQVVGRRKFLPSINLIVSFNNPDLNDINS
NLCNFLKAKLSQDNISPYLLSKNIGFSKKIIHCFLKANSPYKMLSTNVII
ALADYFNVSVDDMIERYPTTKQ
>RF_p10 unknown
MSYNQEGYEFKITQAFNCLNDAIALTYSSVNHFLDIPKVINKYGVLATVA
LSKTKQLNLTDTKLESIVKNGFIIYEVVETIIKASNAITKDQQLFSKAID
DGLNAVNKLQEAAIHLSGAYEPLAEYVTSFFGSNDQHEPLLFDTYTPNST
SAVNEGYHLIGNNAQLIAVEV
>RF_p30 Transposase
MNNHLGYSKYNQSDAQNSRNGYNTKNLITKNGAVEIEVPRDRNSSFAPSL
VAKRQRRLDGFDDKVLSLYAKGMSLSDIKLQLQELYGADVSESLISQITD
DIIEDVKLWQSRPLDPVYAIVFFDCLIVKVRQDKRIINKSVYVALGIDLE
GRKDILGLWISENEGAKFWLGNFTEMKNRGIQDILIACSDNLNGMSEAIG
AVFPKTEHQLCIVHQIRNSLRYVSYKDRKELAGDLKPIYTLAQKKKHFPL
>RF_p18 TPR, tetratricopeptide repeat domain
MRSFMNISHYPCVGNSSRVVPAHSHKALASAASRSVSNSCALPQKPHSQK
STKDKLEYKTESKAARLVSISHDRDSAGFMDQADNANHNTQSPTELFNSK
SQSRKTITVLISFLKLSKYDDAWLKLGKQLLLLHKTPNKQKFYRSALCCF
KSSIKAHPDNHVAYYFSGIILCLLGRYEEAVRMFLSSLRKNAETSTTLLH
TLSEMLSITEGIRLATGGEDVNGIGNSDAAVQQDSSSNNRDTINKDSIFN
KTLDKLEMAIINKLQRCKIEGAVSNSMAKEQEQWNRYFELGMYWYGREQG
NHKSLMYFRRCLQLNPKNEQANYYVGLIMQKQGRYHESLEAYKQAISLRP
DEGFYYYMASQVYTDLEESKEAIEMIDKAISLSPKDIAYRNMKEHILRAF
GIEQDLVDIVKITGELPKV
>RF_p19 unknown
MTLLALIMVNYIIKTFVLKDSIIENIDYIDGKKKFLENELCSFPSESYNN
SFKSSIKAKPSCSNTTSESAARTIKDISEYKELRHFYPLSEKDIDTLNFR
AGREFSNNFMNQLLLKLYIKYPEKRFKNKFTFLSYMEQILANEKHQGPLV
NHTSFRFSCNIEKNLLEYEKYLNKIESSFDTSKEMQVRKKIAGRFSTELA
YEILTKVQFKTNHGNSVVAALVPNQLALSERQIATLSEQLEAVYGVNGYY
VQEVEQEEQITDIKTEDVGYDEDGILEGGRKEEIEKKNSKIKEPDIISSN
KDIGILDIGKELDATNKNTVWHQIRKGLRKELGEHIDQAWFAKAEAKECR
NTGLLTLTMPTRFMADWVRNNYSHVIRRLSEGYGIKRVEYGMRDIL
>RF_p29 unknown
MSIGQNLQKFLTQKISDMKIKKKDFIMKCGIKQPVFNKILDGSLTNPKLT
TITKLADFCNASIDEILGRAPKYYSSKKQTFNPINSHSITNNLLSVVKNT
MTDLDISAYQLAKRIHVSSNTLNMFLDPNVSATPGAATTLALANFLDASI
DDMIGRRPPSRTQEQKRDIPNQLSSLFKQDLEKLSDIKHSVKSSAAQNQN
IKKTTSIKHLNKHKDEGRSH
>RF_p40 unknown
MREWKRDIEAVGNITRLHSKILSQATNLKSIKLDDTSAATSFELDLNIKD
LKIDPYSIALSEVQDSFKYVIENILKEAREEKSESAYSSKQDSLEPKAIK
GITNIDGKACINFKELDSKHQSKIIAICLKESTFENLKEIFEELKLEKEV
LRDYASVICDSYSSVVSAEDAKEFNKLIFAKKDESKLVTESKVELRALVR
EQNFSKSEERKTQLEEQITIVKEQSAQHDEKLVEIAGRISNRLSLIKEHT
TLDSSSVLMGERTIQLNINYETLRKHAGYDMAEYEAGSFKKKLIICAAAF
AMLVASCCISSYIVYKKFPGRIQMRHDGPMHVENSSVMLHYPTIGKIDGT
NNKKIGK
>RF_p58 Transposase
MVGIDIAKRIFQIHGVDKNGNTVLKKKLMREQILTFMANLPKCLVGTEAC
GGASWAREITKLDHTVKLMAPQFVKPYVKTNKNDQADAEAICEAVADQI
>RF_p59 unknown
MEINGKKAKIYYSDSASADGPDYAIIDISSKKAKYKKATYDTSNPSSSHS
DDHERMELINSSDNSIQDNINVISYSIVSAAANKTDYINTSSKRDR
>RF_p28 unknown
MQFKYKRVNIPENDQSGINTYLSNKYVRKENLTLMLANYEERRKCEADEA
YKTDEILREISDNGNKDSTWDLFLNFVIGVKETAFYLAMSVINGYGITHN
EFLMYLTMAIGVKLGDEKTLELVGDEKIPEETKVLAERCMERIKFHKEEV
YNRDVMWEEIMARGKDFDNLVKSESGHSYYDSIPNQGTVMKKWSVYVEPI
IEDNANIQVDMTGQESSCCCCVII
>RF_p65 unknown
MPNKLGYSYKKNFSSSEKGYWSRNEFILKLKTIDKQDLCILCYAVILKLQ
HYNWDSLLAYIQCCFLNTESTIKIWNVQSKIISVRCVDILNNNEYMQIVH
SGIILLILMLLAICVMPIILLTVCLIMYTIISELKRF
>RF_p45 unknown
MLFQILPIFWIIAICAKIPMTKKLIMKFPIISKIWLMLLKFIKDLDIKGM
YSSPNNLTGFSSDMGNHRRDDERSTSPSYFYLPYNIYYESDK
>RF_p39 Conjugative transfer protein TraA_Ti
MERSRSKRKRADSRTASEIEFSLPREVSKELNISLVEKYVNEYIVARGVV
CDVNIHYDNPDNPHVHIQYLTRKLERLENGEVVLGKTKNRELESTKFLYF
LRDRCEIEINKVYEEAGLPYRVTAKSFETLGIDQIPKLHIGPAHHMPATE
LEAKNKEIIAENAKKIYESPEIVFGRISYTKPVFTKEDIAIALSDALMVH
LVSKGSDIAKEQEAIRAFGKGLVNEQAGDGNTEQNIVNDAVGTAAGGGAE
NTDSSQVKETTNNPAIEHLNKEYGEEFLRLYNQLLVSDKIELMDQKDLMG
RTLYSLKSRVNLERRYVSAIEELNTKGEHKLNILDNTIGERNSLKEQIGD
LVNVVGANLQNKFNDKLGSGLGLKLNVFGSKKHAFSDEQIKAILSVCSGS
DISVLEGNPGAGKTFVMKEIVRQYKAAGFKVVGTGPSSVSAKVLSRNAGI
KADNTSLLRKKIVESKGGDFKIDLSSKYYEEEEYLKSIGCDSILNFLRSD
VLDSKTVLIVDEASMIELANMDYLAHEVLRSKAKLVLVGDNNQFTAVGMT
GAFNKARKIAGGVKLTEVRRQERVEYRQATRAMGRFAMQEAIEIYRKLDV
FNIKDNEQEAKTSLVTSFAKEYTEQIDNLKRDDLIAIRSIAIGAYTNEKV
ADNTRVRSELKHSGALKGTEVQISSGGRMLSLMKGDRIVFEENSLRYGIS
NGEVGTILSVKPSVKSFSGGASSKGESDGDGLLKILVHKADGSKDIINID
TASDAANNKWRIKLNHGYALTGYKLQGETVDRMHVYFDRSIGYEAFLVLM
SRHREEVKLHASAEELENIVYQRLDSDVEKVRNQFKINSYEMRDETRINS
AGEEYTVQVKEEIPNWLIGLTLAVSRRANNSFAIDYGKGGTLEGSQLIIK
EYLEARG
>RF_p36 unknown
MVLLYMKRRQKQTLFYFYDSNNLKKEAGMYLNINQNISNLTNIEKEFIAD
KYDAILFNNGNLMFKATHGCLPQFQEEIIKLLDIKLFREVIIEHIFLYEI
KFCEEELRNMRLNKTQEKQIQEKIDEINLLKTQYKTCISISAPNNLNDKA
KIKTLLNDYYSAVLNSVQCSSYLDSLYNFASSSCDSYHYDSYDGAFYIPK
EELKEWEEMQKDNDKEIKICSTQYKELRTQYVNLQEQLSQLVNNLQ
>RF_p60 hypothetical protein
MSVGRKNWLFAGSDSGGHTASIIYSIIKTAKLNHINLWKYLQKVLAIIQD
YRANKVEDLLPWNILLD
>RF_p34 DNA polymerase III, epsilon subunit-like protein
MKHYWTKDHKYYRLTTQANLFGTTDLICSWGSLHSNKGNYKVIHCNSPYD
MDKNIKRITRIRKARGYQHTLPMQEVSNTAGKDFKYNNLEQIADILSISD
QYKVIKRYTKPNFYHLPDNTPKQIGIFLDTETTGLSHEKDKILELGMVKF
EYTEDGRIYQIVDELNQYQDPQQPIPLRITELTGITDEMVQGKAIDQEAV
TQFLENVDIIIAHNASFDRPFFDKMFLHLPPKAWGCSRADIDWKAEKIES
HKLEYLAYKYNFFYEGHRAVTDCLAGLHLLAQTLPIAKQPVLKQLLVNCN
KTRFKIWAKNAPYDTKDLLKARGYRWSTHPQDNYKAWIIEVFEDNLEIEL
AFLRSDVYSTPYNIPVQTINPVDRFRV
>RF_p50 unknown
MKRVCMSKLLGGWSMSLTRYPFNEFDYIMYGMVTNLEELTTGSMASPGWS
PENEQKPDNNPCFTGKRLWVYGGGGCAPEEKPSSMNDVSRIISATINNGW
DGVDFDDECNMNTAFVIKTMEKLKENSKETSFGFIAGYSYNHPNTEKGKK
ITDKVKAIIASGQCDRLVHYCYAAAMWNQNDIINNVKQALVQSISYGIEQ
DKIVLALTTLGLTDWNLNYFLDQIIDLNLGGLFIWRYDELTPNHYKIIKK
RLNKLY
>RF_p07 Type I restriction-modification system methyltransferase subunit
MSPIETLVKPSILNTIVAKLDDLHLSATHSDIKGDAFEYFLRNYGGADTD
FGEYFTPRHIVTALVNLLDPKFGEKVYDPFCGTGGMLITSYKHIYDNLSL
RTPENIQRLKKQTVYGGEITKMYRIAKMNMILAGDGHSNIVRQNSYGTPD
TIKQIDVIKDGFVTKENIKIKYDVVISNMPFGRKMKTEHAGLYGFNTRSA
EITGVLHCLNSLNNNENARLGLIVPEGILFDKRELISIRSISLSDALISS
SSPVNLYICLVILLILSLILCVLPLSPITAILLSASSSILIAATPRMILL
LFLIISSSINFLVLDNAVNLTSKHYNINWICY
>RF_p53 DNA polymerase III, epsilon subunit-like protein
MIRLKFLEEVDIIIAHNAAFDRPFFDKMFPEVITKVWGCSRVDIDWKAEK
IESHKLEYLTYKYNFFYEGHRAVIDCRAGLHLLAQTLPITKTLVLKQLLN
NCHKTRFNVWVHNAPYDSKDLLKSRGYRWSINPQANYKAWMIEVFEDTLE
TELTFLNSNVYKTPYNIPVQTINPCDRFMG
>RF_p20 unknown
MFIRVPYQFLKQLNSNCSISATSRVIMLYLFTKIYKSSANKYNYDDSDSS
LTRHSYSIVTSYRKLQKELKLHRNSISKALKTLEDNNFISKQRFFIKDTE
DYNNSRADKSLWQISVLNVPFITNHNNRHTQEAVISNQTKVEYNNNEALE
SSKEWECTKYDPACTDYGQLYNKDFCIKG
>RF_p41 Transposase
MNNKNIPKDYSEVSVADTKASNRHHEQVDLDSHNTSERPRHDALIRKALE
NPLVAKEFFEMHLPKEIKAMFSSHTLKMEKESFVEADLKHSISDILFSAK
FKDNTGYLWVLLEHQSTPDHFMAFRLFKYMTDIASRHLTLNPKSKHLPFV
YPLVFYNGKKKYNAPKNIWDLCQHKELMQDIWTKDHKVVNVHDIPDEELK
KKAWAGILQFFMKHIHERDLLKRWYEVADLLPEFAKLNIGIDYLELILTY
TLIKIEKSDKIELEKLLKSRLNTEQGEKLMTSLAHHWEQQGVEKGMQIGE
AKGMQIGRNEGKHEKTIEVAKNMLSNNYSIPEVSRITGLSIAEINDLLKS
>RF_p57 Transposase
MRFVPIKTVEQQDILSIHRVRERLIKNRTALANEIRGLLHEFGFIIPQGI
NKVMTKLTEILDEGNLSQLGYQTFSELKEEFLDNNKKIKEIEKRLKIITS
NLTQYQRLTTIPGLGLITATALIASIGSATNFDNGRQLSAWLGLVPRQHS
SGGKDKLFGISKRGDVYLRTLLIQGARAVLNAKIRFTSEEQKSKKDFSKF
TQWMFNLSERSGHNKTTVAIANKLARVVFAVLRSGDDYVESKVCS
>RF_p27 unknown
MSKDGQDDKNVNNEKTQLNDNNSNNKQDQKENTSINHDTLTPEAVTSPSN
ANIADEQNTSQINSEFNQAPKAEGITNDPVGVEQNETNNKKEQSSPGTNI
GDTQKKEESVDANREDTSTEEDEQAVKVSVEAKENAVQAGNTPNEAKEQV
IANNVPTEPDKQDADSVDKDLKQLLSRIDKGESSQKLEDAQVKNVLGAIK
AQLTATANPAELARLASAAASLASSTNNPEMLEQIKGIQAAIAKKEETAE
QIVNSDIAAENLEVQEHQDPEMVRKHLEHEERKTRIDNNWAEYEKIEKES
RERLIANNRFLDQIYNDPNSLTEEQKRLARGQYRSTEEKEEVERKAQQDI
DFAKRTHELHRDLKHAIEHEQEQLNILAPKIEIEQTRAGNDELLQKKQQY
EANISLYKERLEQHINPAIAELDLEREKLLKVVDTHPDLVKDRIRIHFEG
NRDRYEEMKNLKGEPKALEEMEQLMKKAGLENKLNTKKRDKVDVPQSKET
TSSQVVLSDISTNNKRHNILEETLNIVSENKLGGVAKEVISNIQIKGIEN
VGWLGDAQKMTGRSVTGPTSSVGNVTIKPPAQTPSVQKFAARGANIIKK
>RF_p44 Putative conjugative transfer protein TraD_F
MNIQEQGRFTRGAQIFAHQIRMLTQGITNALTVSLTASCMWLIFRILQKI
NILSLYYYCIECYVQLKLAVGQYFYDISQIGITFYDVKRQEWIYRSAEDF
IHKFWYVTKHGTQITSFGSWLAGSAAFEVLGVFALTMPGITIFFWYRGIK
TIGSQKLRGMDYVQASELTKILSKEKVASNIKFAGLPIVKDSERQHILIT
GTTGTGKTNMLNELLPQIRSNNEKAIIVDMTGSYVNKFYDPSNGDIILNP
FDSRTSNWLPWNDIVDTEDFDDLASHFSSNNGMGRASFFDRTAELVLAEA
LKKYAVSRD
>RF_p21 unknown
MMYITALQLKVARNILDLGVRDIAVLLHVSKTTISKVELNKTRDFLPKHN
AALVHFFSCNNISFPNPFSIQYKPQNIINTNTESAITRFQLKGARCILNI
SQADLAKALNINRSVIIEAEKYQNEQRLTLFGQQKELEIIQFFNDNNIVL
YDHLSLFFRKRVDK
>RF_p54 Transposase
MVVKVRQDKRIINKSVYVALGIDLEGRKDILGLWISENEEAKFWLGNFTE
MKNRGMQDILIACSDNLNGMSEAIGAVFPKTEHQLCIVHQIRNSLRYVSY
KDRKELAGDLKPIYTANTEKEALSALEAFESKWSKQYPQIAKSWYIHWDN
LMILGYPEEIRKIIYTTNAVESVNSQLRKVTKNKRLFPNDNAVFKSLYLA
IDYMTKKWSMPIPNWNAAMAHFLIKFEERI
>RF_p56 Hyaluronidase
MNIFSLDTFSYGIIMGYYGPVWSNEVLIEYADFCKKYGYKYFIYAPKMDK
LLRDNWNIFFTESRVQELKNIRDTFEEKGVAFGIGLSPLGLNNLKDIEKV
EKVLQQKITQINNINPTILGIFFDDINKDSIVPDLGVGQVQVAEYIAQRS
NAQNFASVPSYYSNDQILQRVLGPTPESYFADFSQLDQKFSIFWTGEHIM
SDGYSQKELDNISNKLGRKVLIWDNYPVNDPTYLKDHLRISGIDRPQELS
SWTPSIAFNPMIQPNMSKIPLSTAQCLFSSEKYNKREIYIEKLIELCGKD
LAQAIDQNLPYFELNGINRTETSNIKRMKELFSLFAEINEQQYTHEIIKL
LGGSQEI
>RF_p66 Site-specific recombinases
MAKVGYARVSSLGQLLSIQLDKLKDCDKIFQEKKSGLDGTRSALKNALDY
VREGDIFIVTKLDRLARSTAHLCKIAEILNQKSVALKVLDQNIDTKDATG
RLIFNVLGAIGQFETEIRAERQIDGILKAKERGIQFGKKQYLTKQQLNDL
KEKRKQGIKIKNLMQEFNLSKASIYRYLAQEV
>RF_p68 unknown
MAKGWIKEQEESLITQILAGKFYHNLSNEIPCDSLPVLQSPSNTQYWGNE
NPSVSSVLLADIVASCNKKQDNLAGAATFFPFIDSSYALPDSIVPASYSF
ATKNGMTLFGDYQYGAHRYFKEQLVFGPEDCSTAVGKATYLTTDQIKDIN
TTNMQAAYEASIETGSPDPKYHYQAVTFLSGDIQDSQLRLIQEGDIYLVK
GHTALIATKPDSRSTITTIQFNRDIDSAENKILGGGTYDYNLCDKAKEIK
TGIYILRPTTVQPLHKSYSLGELLNQIDSKYLTLFPDGPTNISGDCRIFL
EDNTTNIVGDTGYSTGQF
>RF_p38 Conjugative transfer protein TraA_Ti
MHTHSHIQRSKGQNAVAKAAYISASKLVYKTTCHETGEEISITFDFTQKQ
GVIYSKIFVPEGFEDAAWLQDREQLWNGAEAREKERILGLHQK
>RF_p63 unknown
MGGSNAADRVNWSQLQFQWRDAIIWPDNDQPGFKAAEVIKDKINKANEHI
GFVSVVDPRRLQFGGSTHKDLLPEKWDQEKSSHYIKYLEATGKGGVAHDY
LKYDSIMYQDILTSLAMRDERLSKSIKELSDSNNTSDIETIEHRTKLIDD
TQNLYEKKALEYSGIAGTNVVYRGHLELMVKNYGESHEKVT
>RF_p61 Transposase
MTNEEHNQRQQQTDVSTNGDANDTTAERPRHDELFKKVMSEPVAAREFLE
HYLPASFKNKINLNSIKIEKESFVTEDLRKRFSDVVYSVSLNKNNIKDST
TGSANNDKAYVYVLIEHQSSSDYWIAFRLWQYMLLLCKRHKDANKNKSNA
AAEKDNKLPLICPIVVYANDKLYNAPRSFWELFEDCKTAKEMMGGEYLLV
DLQKQSDDEIEQKKHLGMIEYMLKHIKARDILNLWQSLLEKFESSIEIDK
ENGYIYIKWLLWYSDAKVSEDKQVELAKIIAKHLNKADQEGLMRTIADKY
IDEGVQKGMVQGMQIGRNEGMQIGEARGMQIGEAKRTMEVAKNMLNAGSD
ISFISKVTGLSISELNQLLKS
>RF_p64 Transposase
MTYSMSWIILNEKLMAKAYSYDLRIRVIKSLTEGKTIKETSEIYSISRKT
IIEWKELKKQTGDVKAKSGYHTGHRRIIRDIEGFKKFIELNFDKTTMELA
NN
>RF_p33 unknown
MVKKSLFLILLCIPILSGCKCSKHHNAKHQYNEYSKTACGNPPPPCVHHE
ALVTPYSGPLVSIDCPKESLGHHSKHYKKHHKKHNKSHDMTGALPPKYLQ
VKDFKECLSTEQVSTYTQYCMPEHKPEHCPFNSWQQLVKLDMPRCKA
>RF_p24 unknown
MRSFMNISHHHTVGNSSKLFAASSTNQSQYLESDYFLPASYSENYYSRKY
SRSISKISRIVSASLLSAMMLTATLDAKAHPSVESSILEPNQSFLFGKDS
AGISTNVPLPPIMPQSPPSAPPIPPVLPAMPDFISDASIGGKSDNRSALL
ESIRNFGKNILKKSRKNQSLKLYLAMAGI
>RF_p31 Transposase
MIFLGYPEEIRKIIYTTNAVESVNSQLRKVTKNKRVFPNDNAVFKSLYLA
IDYMTKKWSMPIPNWNAAMAHFLIKFDERI
>RF_p22 unknown
MALKKRPLQISQQKIENLANELADKPYGYTKEDDTLVRTTISLPASVLFK
LEDLSRHNKRTRSSLKSVSAIIRDCIAKSLNI
>RF_p01 Transposase
MPYKERAKTGLPRNVDKPKYKVTNWSQYNKSLRQRGMISLYFPEGDLESL
FINVEPYVEGESGRATTYQVPYIQLIYTLYRLFGFGQRQITGYLWFIFAD
SIRGQTVLQ
>RF_p47 Conjugative transfer protein TraG
MVLPLTCLVGGFKFFQFWCNFTIWVSSWPIFYSLVHCLGMLSLSGKVSVF
GGNGMSILSQGSYSEYALNTYATYQMLECLVPPLSWALFKACSHGMSMLA
GQFSPLSVASSVAAGIADNNLSMDNVSIGNRTISQQNLAPSLMMADSSLQ
KALIH
>RF_p14 Ankyrin repeat
MVSMKQVERQKLNQKLMRAAATGDIEAVQKLVLRGADIYCRDHQGDTALS
LAAGSGYLDILDI
>RF_p62 unknown
MNINDVPDSHHKEIARDVYSTISEYSNRYALDATDKNKIANSVYEAHCTL
KAWQQRSYAQVATSYTVYQDRQKYLEHKRLADIERESERKTLIEHTQQIK
HEILVAKTVSEIFVALEKDQKFFIEQNGNIKYTTFNYKFVDLVEQALEYK
EQELLPQLKDAAAEAEQHGVFSTQDILAELKGSKDLAETYKHFDSSLERH
HLETQHQQIRKDKVDAKTTDEMLTTIRREHEFFKSLNGKLKYAGQYDSSV
LSAISNAKSIEQDKLITNMHNMVVYAKKHGILNDHEILNQFNSNDSQNVL
KNLSKTCEKHYMDRHNENIKQLLDDEHVIIGSKKYSCPLKYMKHEMQNDI
PSFIDEKQIAATFAKVKAEVKELRLERELEHTMTMRF
>RF_p55 Transposase
MCKFLKGYIKENITKRGITMPQKQNAAMNQAIDLLINNDTDVSTLFKEDG
LLKELTKHLVEKALQSEMNNHLGYSKYNQSDAQNSRNGYNTKNLITKNGA
VEIEVPRDRNSSFEPSLVAKRQRRLDGFDDKVLSLYAKGMSLSDIKLQLQ
ELYGADVSESLIVGLQMI
>RF_p42 Ankyrin repeat
MHHLIDQLKSKNNIFYIRALVPMIVLCVLLISKTVYGYDTKLEHLCKAIS
NNNIDLVKQAQQKSQYNQRCIQERETPLILAISNNNIKVVQMLLDFGVDI
EQEGRYGGAALYNAICHDTNIVKLLIKHGANINKRLSEGSRETPLIKATK
CFENGSIANTEHIKILLKYGADINAKDVNGITALKMAEMQNDQSAINLLR
SSGKK
>RF_p17 TPR, tetratricopeptide repeat domain
MKKRNEQEAFKLLTSGQLLALYRSYSRAGELKYASPVLEYLLESTYSDAE
RYFEKAVVLKEILRTEEALEACDKAIELKPDYAAAYDLNGRILYRPWKYE
EAIKAFDKVIELNPDFQDVYLNKGWCLTEIGRYEEAVECFNIGIKKNQCS
EELYASKAWVLLQELNQKDEEALQAYKKAIELSPKDNIYYFFAAQILKEL
GQDEEAIAMIDEAIALEPTMKECILYCFKNDDFDYVVTLRKRECMKLTKA
YFRE
>RF_p46 unknown
MSDQYAATSSRLNSLSSKDSMLRTMSGQQALELASRLIAEEARSIGISEQ
EQMQFKDAVSTDSTTTDNTIMRNNKETATSNNASVGFNAFGLGGASARVS
ASNNTSSSSEEVLSKKQTINNVLEKTKSALQEGRLNSFNSDTQSLARTLS
QNYQEQESIGREISDAISAQDQLSRSRQYVAQNAATIDRNMNEPVLNAII
DSNIPGVSSKEQAARWARTHIHEAASIANSVMPVDNIALDNGRHLSGISS
DVKNIPMRSEQHLKNEYQVQTGKIEASADKINNKQELAYQSVETRLNNNL
SNSVKESYNNLNNTAQLVEQKGKKIEDQYEDTSDSTVKRTLDEIGKNSRL
>RF_p12 unknown
MFKIKNITKSIKHIKKILTPSSHKTTCSSIVASTFDMETSNKITSDFGFS
KKYVVNNSKEIDWVGIRKAIYNRFSDEIDATNIQSLEQVTPLVASKQQGF
SATNVNINWAEIRALIYNRFADEIHAWSKKQHGDIIKYSPVRDVNEELEI
IKEQGYSFAKQKAALKRSITDKWDEIERIKYLSQDTSWNTKSQQKLLSHD
NSIIGRMKFLSIKGYLSNYAGDDELSQSIDSVIKIKDTLITEFMNRVYDK
HMHATAARQNVAEAITFDSLIDEQEVMVLGE
>RF_p48 Transposase
MDMAIEYPAYGQLRVSNELKKSGILVSPGEVRSIWLRNDLNNISKRLKAL
EAKMAQDGIVLTEAQLQVLEKRRNEKEAHGEIETQHPGYLGCQDTCYVGN
FKGIGKVYSQVFIDSYTRVVDAKLYADKTAITAADMLNDRVLPWYETQGI
PMLRILTDRGSEYKGNIEHHAFELFLSIEGIEHTTTKAYSPQTNGMCERF
NKTMKQEFFDTAMRKKIYTDLDDLQLDLDIWLEHFNNERLHSGKYCYGKT
PMQTFQDSKKLAIEKNNEILYLEYSSDSQNLTDNQVQNL
>RF_p52 hspP1, Small heat shock protein
MNTYLSEITNLIYYINLKEVCMLYNNIKSYLLSGITVILLTGHPVIAADN
VSKPDNKSQTAYLQHPPDLRPFSIFDYYLDNMFEHKLSAYSSSAIRTKFI
TQDKQYILVLEVPGYDKSQIKVKVNSNKLFITGNVEQNNKSEASDDYTKR
NFNYVVSLYEDVDQNNISSNLKNGILTITLPRIEVKEKDAKEIPIQ
>RF_p51 hspP2, Small heat shock protein
MFNKLMEVLMSFNLPRIRNKSELQHHTNKQSYVDDVFNNFFNEIASFSYP
THYNNKILSPRTDITENESEYHLEVELPGVTQDNIDLKIDSNILTIDGKK
EQSTEKKDHNYHMKERYYGSFSRSISLPSNVDEEHVTANFKDGILSIKIP
KKEQSKAKKIKIS
>RF_p26 lon, ATP-dependent protease La, bacterial type
MKNVEYQENIAEVEEVKIRRKNMKSYVLALELCNKVMKTDGIDNIPREDH
TNLFNFKVYKNGIVALSELLVRTIDEKTKIKDEKLIEGYEPIINLLEKFI
RPKNDAEHYFRQGQRLYGNGEYEEALISFEEASNIITRSMYYHHKGKALL
KLERAEEAIKAFNRAIELKPDYAEAYNEKGYALASLEKHNDAISCYNKAI
ALKPDYADAYRCKGDILHNLKRYEEAIKEYNKAIKLDPNFQHALNNKKEA
LQAIARQASDKDFEVLLSNTPLPSNVGKVAEQKIARLKGSQGSNDGDRSY
TEKYLNYLFRLPWGKYDKASIDIIEAEKVLNENQYGLESIKQKIIEALAF
MANSQNAKPPILCLVDAPGVGKTSIAKIISKALNRKSVTLSLAGARDEDL
IRGCMDFYMGARPGKVLSLLSEVGSSNPVMILDEIDKISQERGALLEGAL
LQLIDPSQNDSFTDDYFDFGYDMSKVFFIATANSIDNISYPLLHRMEVID
ISGYTDNEKVKITQDYIIPKLMKEANVPSNKFTLSNELIRYIIENYTWES
GVRDIERKIKELLQKSLLAEARKEQITLNKETIEEYFKHSKYHKQKLQDD
EVTIGMINGLAHTARGGDLIKIEASKYKGDGKIKATGKLGEVLKESIDAA
MTCLKSSIDSKTKEINDDILKTHDIHIHLPAGATPKNGPSAGITIYTALY
SLLSNKKIRQDIAMTGEITLKGRVLEIGGLKEKLTAAVREGIKEVIIPKD
NERDLAEIPEEIKQALIIHTVSNTSEILRIVFDTKVSNKNTKQKTPKENM
GKVLQFPKQKKDKKN
>RF_p03 parA1, Chromosome partitioning ParA family protein
MVRVYYNCITWRLCMSSKIIAIINQKGGVGKSTIAVNLSFGLYKKTSRVL
LIDLDPQAHSSCIYCPETILYDKTIATAFINKKIDINNLILEAIVHNEKL
NNLKIIPSNIKLATVIEQISSTVYRERILQNHLNTIKKDYDYIILDCPPT
LGILAVNAIYCANSIIIPTNYGRYSLDGMADLLTAIQEIKEDHDYKFFIL
KNLYEQKNSQTNRYINEQLKALDEHLLTTIIRKNEAINQAQINNLPIQIF
NSSSKGAQDFSLLVDEVIHYA
>RF_p23 parA2, Plasmid stability protein ParA
MIVIIGSNKGGTGKTTTATNIALALAYSNYDVCLVDADFQRSASRWHQDR
QEAKLMPSITLIEKYDNISTTLEELDKKFNYIIVDVAGRNSREMITGLSV
ADILISPHQASQLDLDTIVELQEQIIRVKDINPKLSSYILHTMASTNPTV
RTNERKEFFEYLSDFPQLKLLNTCCYYRKIYRDVMPLGKAVIEYNNLQAK
NEILELIKEVF
>RF_p35 parB, ParB-like nuclease domain
MQIVTVDPKDCTRWKYADRGNFEFGDVVELASDIKKNGQIEPVHLRYCKH
DPKFTYEIIAGSRRWKACLDAELPLRAVIEDVTDEHAAIIQIKENQGLDI
CDYSKGMYYTRLLADLSITQGHLAKNLGISRQKLVNYLYFAKIPKEIWDT
VGNVTKVTSRTACTIFSLSQKGSKYIEALIECADDIRKGIGATSLETLIL
SKVKNDIKILSHFPLALDDGTIVGTWKNGDFKLNKDLNINKDKFLKHILK
FF
>RF_p11 pat2, Patatin-like phospholipase
MTTAIHTQQTFEHIEQGTVDNIKGDNTTHDSTSESIKSNRILSLSGGGVK
GIAELVVLAEIEERTGKSISELFPIISGTSVGGLIAGLLTIPKEQGSNIA
KYSAKDALKIFTDAAPKIFEHHWYDGIKQIFTHKHSQGPLKEILEQHLAG
LRLDDTTSRLIIPVTDLASKDKEVKIFDSHDSYSPHIRVQDVLLATTAAP
TYFKPVTNQEHIKGYENQEDALYAYADGGLGANRPAYEALKILKNGHSRE
ENAKILDDTMVLSLNFDNDHKASSSIPKIGFDGVIGWLVKGKLVSRLMQS
SEDSSTAEVRVGLPGEDEFVEVKLPITKETSSLDNSSLKNIEALVAVGRK
YIEEHTEQLQKLCDNLVKYVEVETKAMTHEKAAKDAGGAIELGSGLDLEN
SSDDDAMINKEAIANSNEDANKSDGDDVVSNSIITNENREQILDGIKQYL
TSFANDNPDLQENIVQYLTSVNDYSNQELEKLILDFAEGQKVVQEMELHE
AESVLAPYMSCGMEANQEAMELEGIDDEVQNHEVLA
>RF_p25 sca12, Cell surface antigen-like protein Sca12
MGTMMIGVVRIVFQILMDMTLYTSSGSEYSEDSGDEDGIPISPPAIEEDR
AELDSIRELQVSRQSSAVASNDSINEVSFAADSSGFKEEQQEESTTESDF
EILDEVDEEDSLSKDISTNLGGTVSTEPQEQSTAKDKEELLKKATIAVAS
HNQAREANKISSKQIRHRMFVRDILISPVSAGEDGTDILARIIGYHIWSS
GTLGSNKQKSKADLNGYSSKIAGGTIGLELNLENDLLLGANFSKFSSRVK
YQDQGGSSDLRSSTASNRAKYDTHIFSLYGLSPVSRNMSVSVIGSAGLSK
GRKARSKLLSFEPHLNYRVELPKAVTLIPHIGLRYEYEKANAYQEQIASN
LSIESAKKSYQALSGEIGSRVIFAPIKLNGSTPRAISITPTVHFSVERKI
GSRGTSHPFTLTYYESKQTIGTGTISANAQNERTSLNAGVGLIAASQNIK
LELLYDQQRQRRFKSHQGVLKLKVSL
>RF_p13 tmk, Thymidylate kinase
MNSTNRVKRGRFITLEGVDGSGKSTQCRILKEYLISRDIPVMSTREPGGT
EIAEEMRSILVHRDLLPMSELLQVMAARYDHIVKKILPAIEAGYTVICDR
FIDSTVVYQGLEIDSGMELVYSLHKKLMPSIMPDITFFIDIEPVLAMERV
KVRNGSNYSSSNLRNNRFDIKDLDYYKKIHNGFRTLADKYLKRIKTIKVT
ALSTPTPTHKIITRYYQGLDLGYAKQI
>RF_p32 tnpR, TnpR resolvase
MRLFGYARVSTNQQLLDLQIKRLKDAGVKESRIFHDKATGSNLDRAGLNN
LLHKVEEGDVILITKLDRLGRDTADMINLVNQFANIGVAVRFLDDGISTE
GSTGKMVITILSAIAEAERARILERTNEGRLEAKTKKVLSLVATVL
>RF_p37 traD_Ti, Conjugative transfer protein TraD_Ti
MSLASLYMRMRMQLQKAVAFDRKSDARKKIMLGGLFVKAGLDYLHPDNAH
ILYGMLLDCKEQLIINPKIIDKWKSKGQQLLKKSI