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2024-04-29 10:39:45

Gene list

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Genomic element: pYV

Number of genes found: 99

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Yersinia pseudotuberculosis IP 32953, IP 32953
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA pYV0051 hypothetical proteinpYV CDS35593 324 + 0.382716
NA pYV0023 possible transposase remnantpYV CDS19220 615 + 0.55122
NA pYV0030 hypothetical proteinpYV CDS22682 294 - 0.5
NA pYV0037 C-term conjugative transfer: surface exclusionpYV pseudo27269 606 - 0.486799
NA pYV0055 yopB; putative Yop targeting proteinpYV CDS37490 1206 - 0.466003
NA pYV0097 hypothetical proteinpYV CDS66903 93 - 0.387097
NA pYV0086 yscJ, ylpB; putative type III secretion lipoproteinpYV CDS59745 735 + 0.428571
NA pYV0080 yscD; putative type III secretion proteinpYV CDS56827 1260 + 0.468254
NA pYV0036 hypothetical proteinpYV CDS26842 261 - 0.509579
NA pYV0084 yscH, yopR, lcrP; putative type III secretion proteinpYV CDS58893 498 + 0.427711
NA pYV0032 sopA; putative plasmid partitioning transcription repressorpYV CDS24085 1209 - 0.434243
NA pYV0045 hypothetical proteinpYV CDS32524 192 - 0.458333
NA pYV0009 hyothetical proteinpYV CDS7489 318 - 0.493711
NA pYV0072 yscS; putative type III secretion proteinpYV CDS50163 267 + 0.453184
NA pYV0016 tnpA; putative transposase proteinpYV CDS11386 2316 - 0.51943
NA pYV0079 yscC; putative type III secretion proteinpYV CDS55007 1824 + 0.453947
NA pYV0054 yopD; putative Yop negative regulation/targeting componentpYV CDS36551 921 - 0.431053
NA pYV0041 yop targeted effector yopTpYV CDS29513 969 + 0.430341
NA pYV0024 sycE, yerA; putative yopE chaperonepYV CDS19897 393 - 0.409669
NA pYV0010 hypothetical proteinpYV CDS7978 459 - 0.555556
NA pYV0019 putative transposasepYV CDS15757 810 + 0.507407
NA pYV0070 yscQ; putative type III secretion proteinpYV CDS48588 924 + 0.481602
NA pYV0033 hypothetical proteinpYV CDS25800 114 + 0.561404
NA pYV0005 repA, repA1; putative replication initiation proteinpYV CDS4823 879 - 0.5438
NA pYV0095 putative transposasepYV CDS66154 537 + 0.489758
NA pYV0090 putative transposasepYV CDS62839 267 + 0.434457
NA pYV0039 putative transposasepYV CDS28171 183 - 0.513661
NA pYV0043 possible transposase remnantpYV CDS31368 192 + 0.458333
NA pYV0098 yopP, yopJ; putative targeted effector proteinpYV CDS67276 867 - 0.346021
NA pYV0061 yscY; putative type III secretion proteinpYV CDS43041 345 - 0.46087
NA pYV0040 yop targeting protein yopK, yopQpYV CDS28491 549 - 0.333333
NA pYV0071 yscR; putative Yop secretion membrane proteinpYV CDS49508 654 + 0.43578
NA pYV0094 yopH; putative protein-tyrosine phosphatase Yop effectorpYV CDS64367 1407 - 0.474058
NA pYV0035 hypothetical proteinpYV CDS26357 459 - 0.551198
NA pYV0042 yopT chaperonepYV CDS30481 393 + 0.414758
NA pYV0011 possible transposase remnamepYV CDS8586 189 + 0.492063
NA pYV0034 putative transposase remnantpYV CDS26051 195 - 0.497436
NA pYV0027 hypothetical proteinpYV CDS21574 276 - 0.434783
NA pYV0029 hypothetical proteinpYV CDS22359 174 + 0.471264
NA pYV0093 putative transposasepYV CDS63967 180 + 0.472222
NA pYV0047 yopM; putative targeted effector proteinpYV CDS33232 1653 - 0.395644
NA pYV0060 lcrD, yscV; putative membrane-bound Yop proteinpYV CDS40940 2115 - 0.46383
NA pYV0018 putative transposasepYV CDS15467 267 + 0.479401
NA pYV0053 hypothetical proteinpYV CDS36160 168 + 0.428571
NA pYV0004 hypothetical proteinpYV CDS3411 240 - 0.504167
NA pYV0067 putative Yops secretion ATP synthasepYV CDS45443 1320 + 0.508333
NA pYV0059 lcrR; hypothetical protein lcrRpYV CDS40503 441 - 0.489796
NA pYV0003 putative transposase remnantpYV CDS2919 321 - 0.510903
NA pYV0031 sopB; putative plasmid partitioning control proteinpYV CDS23123 966 - 0.415114
NA pYV0006 hypothetical proteinpYV CDS5803 153 + 0.490196
NA pYV0069 yscP; putative type III secretion proteinpYV CDS47223 1248 + 0.489583
NA pYV0088 yscL; putative type III secretion proteinpYV CDS61087 633 + 0.450237
NA pYV0099 hypothetical proteinpYV CDS68143 135 - 0.392593
NA pYV0087 yscK; putative type III secretion proteinpYV CDS60458 651 + 0.482335
NA pYV0050 hypothetical proteinpYV CDS35445 123 + 0.463415
NA pYV0002 hypothetical proteinpYV CDS2218 450 - 0.453333
NA pYV0049 hypothetical proteinpYV CDS35209 216 - 0.430556
NA pYV0078 hypothetical proteinpYV CDS54588 414 + 0.42029
NA pYV0008 possible transposase remnantpYV CDS6779 405 + 0.516049
NA pYV0068 yscO; putative type III secretion proteinpYV CDS46759 465 + 0.455914
NA pYV0074 yscU; putative type III secretion proteinpYV CDS51211 1065 + 0.431925
NA pYV0077 hypothetical proteinpYV CDS54264 99 + 0.323232
NA pYV0092 putative transposasepYV CDS63560 402 + 0.470149
NA pYV0096 transposase, IS630 familypYV CDS66692 129 - 0.434109
NA pYV0028 putative transposase remnantpYV CDS21960 204 - 0.480392
NA pYV0021 putative transposasepYV CDS17484 432 - 0.571759
NA pYV0012 hypothetical proteinpYV CDS8771 210 - 0.447619
NA pYV0020 sycH; putative yopH targeting proteinpYV CDS16714 426 - 0.41784
NA pYV0064 tyeA; putative Yop secretion and targeting proteinpYV CDS44105 279 - 0.433692
NA pYV0091 putative transposasepYV CDS63141 423 + 0.453901
NA pYV0085 yscI, lcrO; putative type III secretion proteinpYV CDS59391 348 + 0.468391
NA pYV0063 sycN; putative type III secretion proteinpYV CDS43747 372 - 0.524194
NA pYV0083 yscG; putative type III secretion proteinpYV CDS58549 348 + 0.442529
NA pYV0044 hypothetical proteinpYV CDS31576 420 + 0.388095
NA pYV0057 lcrV; putative V antigen, antihost protein/regulatorpYV CDS39192 981 - 0.372069
NA pYV0076 lcrF, virF; putative thermoregulatory proteinpYV CDS53370 816 + 0.416667
NA pYV0007 repB, repA2, copB; putative replication transcriptional regulatorpYV CDS5998 255 - 0.423529
NA pYV0017 putative resolvasepYV CDS13865 552 + 0.46558
NA pYV0001 ypkA; putative targeted effector protein kinasepYV CDS12 2199 - 0.482947
NA pYV0066 hypothetical proteinpYV CDS45305 105 + 0.390476
NA pYV0065 yopN, lcrE; putative membrane-bound Yop targeting proteinpYV CDS44364 882 - 0.460317
NA pYV0038 N-term fragment conjugative transfer: surface exclusionpYV pseudo27894 114 - 0.412281
NA pYV0022 putative transposasepYV CDS17915 1173 - 0.544757
NA pYV0073 yscT; putative type III secretion proteinpYV CDS50426 786 + 0.428753
NA pYV0015 possible transposase remnantpYV pseudo11219 171 + 0.48538
NA pYV0013 hypothetical proteinpYV CDS9103 1299 - 0.43341
NA pYV0062 yscX; putative type III secretion proteinpYV CDS43382 369 - 0.495935
NA pYV0014 possible transposase remnantpYV pseudo11010 225 + 0.524444
NA pYV0056 lcrH, sycD; low calcium response protein HpYV CDS38673 507 - 0.441815
NA pYV0026 hypothetical proteinpYV CDS21282 300 - 0.38
NA pYV0048 hypothetical proteinpYV CDS35009 96 - 0.40625
NA pYV0075 virG; putative Yop targeting lipoproteinpYV CDS52851 396 + 0.444444
NA pYV0082 yscF; putative type III secretion proteinpYV CDS58284 264 + 0.416667
NA pYV0046 putative transposase remnantpYV CDS32890 300 + 0.436667
NA pYV0058 lcrG; putative Yop regulatorpYV CDS40174 288 - 0.465278
NA pYV0052 hypothetical proteinpYV CDS35951 123 + 0.479675
NA pYV0081 yscE; putative type III secretion proteinpYV CDS58083 201 + 0.422886
NA pYV0025 putative outer membrane virulence proteinpYV CDS20483 660 + 0.510606
NA pYV0089 yscM, lcrQ; putative type III secretion regulatorypYV CDS61944 348 + 0.479885