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2024-04-29 08:32:57

Gene list

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Genomic element: pHCM2

Number of genes found: 300

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA pHCM2 misc_feature16368 552 - 0.530797
NA pHCM2 repeat_unit104273 21 + 0.52381
NA pHCM2 RBS93773 5 - 0.4
NA pHCM2 RBS53762 5 - 0.6
NA pHCM2 misc_feature42188 13839 + 0.539273
NA pHCM2 misc_feature67908 33 + 0.454545
NA pHCM2 misc_feature4166 906 - 0.532009
NA pHCM2 RBS60377 5 - 0.4
NA pHCM2 RBS84703 4 - 0.75
NA pHCM2 RBS81295 5 - 0.6
NA pHCM2 RBS6170 6 - 0.5
NA pHCM2 repeat_unit105915 21 + 0.47619
NA pHCM2 misc_feature103255 3162 + 0.492094
NA pHCM2 RBS65230 6 - 0.5
NA pHCM2 RBS27312 4 - 0.75
NA pHCM2 repeat_unit71561 57 + 0.368421
NA pHCM2 RBS98824 4 - 0.75
NA pHCM2 misc_feature224 6499 + 0.517003
NA pHCM2 misc_feature14269 3207 - 0.475522
NA pHCM2 RBS90717 4 - 0.5
NA pHCM2 misc_feature19641 24 - 0.666667
NA pHCM2 RBS73932 6 - 0.5
NA pHCM2 RBS5082 6 - 0.5
NA pHCM2 RBS102044 5 - 0.4
NA pHCM2 misc_feature3547 180 - 0.555556
NA pHCM2 stem_loop62412 69 + 0.333333
NA pHCM2 RBS56906 5 - 0.6
NA pHCM2 repeat_unit23268 19 + 0.578947
NA pHCM2 RBS98064 7 - 0.428571
NA pHCM2 repeat_unit22861 20 + 0.6
NA pHCM2 RBS80328 6 - 0.333333
NA pHCM2 RBS2699 5 - 0.4
NA pHCM2 repeat_unit104699 21 + 0.380952
NA pHCM2 misc_feature2427 33 - 0.545455
NA pHCM2 RBS74060 4 + 0.75
NA pHCM2 misc_feature39720 518 + 0.503861
NA pHCM2 repeat_unit106270 21 - 0.380952
NA pHCM2 RBS18895 6 - 0.333333
NA pHCM2 RBS83755 6 - 0.333333
NA pHCM2 RBS31946 4 - 0.75
NA pHCM2 misc_feature91603 306 - 0.562092
NA pHCM2 misc_feature92347 318 - 0.525157
NA pHCM2 repeat_unit104677 21 + 0.52381
NA pHCM2 RBS4138 5 - 0.6
NA pHCM2 RBS89581 7 - 0.428571
NA pHCM2 stem_loop87184 57 + 0.298246
NA pHCM2 repeat_unit83765 57 + 0.421053
NA pHCM2 misc_feature63969 444 - 0.563063
NA pHCM2 RBS6943 5 + 0.4
NA pHCM2 RBS77273 7 - 0.428571
NA pHCM2 misc_feature85701 426 - 0.556338
NA pHCM2 repeat_unit70130 25 + 0.56
NA pHCM2 RBS52503 5 - 0.4
NA pHCM2 misc_feature92104 126 - 0.539683
NA pHCM2 RBS67865 6 + 0.333333
NA pHCM2 repeat_unit73005 57 + 0.350877
NA pHCM2 repeat_unit104635 21 + 0.52381
NA pHCM2 misc_feature56254 2011 + 0.530085
NA pHCM2 RBS100726 5 - 0.6
NA pHCM2 RBS1137 5 - 0.6
NA pHCM2 RBS71558 5 - 0.4
NA pHCM2 misc_feature97421 4792 + 0.521494
NA pHCM2 misc_feature25623 1754 + 0.524515
NA pHCM2 repeat_unit22924 20 - 0.6
NA pHCM2 RBS77795 7 + 0.571429
NA pHCM2 RBS87074 6 - 0.333333
NA pHCM2 repeat_unit104210 21 + 0.47619
NA pHCM2 misc_feature64368 24 - 0.583333
NA pHCM2 misc_feature90665 24 - 0.583333
NA pHCM2 RBS22206 6 - 0.333333
NA pHCM2 repeat_unit77276 57 + 0.245614
NA pHCM2 RBS79862 4 - 0.75
NA pHCM2 RBS24435 6 - 0.333333
NA pHCM2 repeat_unit23520 23 - 0.478261
NA pHCM2 repeat_unit106189 21 - 0.380952
NA pHCM2 RBS90013 5 - 0.6
NA pHCM2 RBS65977 5 + 0.6
NA pHCM2 repeat_unit104231 21 + 0.428571
NA pHCM2 repeat_unit106230 21 - 0.47619
NA pHCM2 misc_feature69148 2986 + 0.4501
NA pHCM2 RBS25927 6 - 0.666667
NA pHCM2 misc_feature81557 21 - 0.571429
NA pHCM2 RBS8099 4 - 0.75
NA pHCM2 repeat_unit105843 21 + 0.47619
NA pHCM2 RBS62772 6 - 0.333333
NA pHCM2 misc_feature12473 24 - 0.5
NA pHCM2 misc_feature95537 69 - 0.57971
NA pHCM2 repeat_unit83042 57 + 0.280702
NA pHCM2 repeat_unit73940 57 + 0.333333
NA pHCM2 RBS18514 5 - 0.6
NA pHCM2 repeat_unit106149 21 - 0.428571
NA pHCM2 RBS73002 4 - 0.75
NA pHCM2 repeat_unit62412 24 + 0.375
NA pHCM2 RBS91195 5 - 0.6
NA pHCM2 RBS100958 5 - 0.8
NA pHCM2 misc_feature58316 10523 + 0.527891
NA pHCM2 RBS62309 4 - 0.75
NA pHCM2 RBS19113 6 - 0.333333
NA pHCM2 misc_feature89033 540 - 0.546296
NA pHCM2 RBS78366 4 - 0.75
NA pHCM2 repeat_unit23364 19 - 0.526316
NA pHCM2 repeat_unit104252 21 + 0.380952
NA pHCM2 RBS51830 4 - 0.75
NA pHCM2 RBS72562 4 - 0.75
NA pHCM2 RBS658 6 - 0.5
NA pHCM2 misc_feature67127 246 + 0.520325
NA pHCM2 repeat_unit106065 21 + 0.571429
NA pHCM2 misc_feature30104 942 - 0.555202
NA pHCM2 repeat_unit77707 59 - 0.40678
NA pHCM2 RBS53310 6 - 0.5
NA pHCM2 repeat_unit105882 21 + 0.428571
NA pHCM2 RBS47200 5 - 0.4
NA pHCM2 repeat_unit72053 57 + 0.333333
NA pHCM2 misc_feature21327 33 - 0.575758
NA pHCM2 repeat_unit23453 23 + 0.478261
NA pHCM2 misc_feature103122 38 + 0.657895
NA pHCM2 repeat_unit104593 21 + 0.380952
NA pHCM2 misc_feature3667 24 - 0.666667
NA pHCM2 misc_feature100580 24 - 0.625
NA pHCM2 misc_feature90820 366 - 0.554645
NA pHCM2 misc_feature7648 925 + 0.527568
NA pHCM2 misc_feature95207 1812 - 0.548013
NA pHCM2 repeat_unit104656 21 + 0.428571
NA pHCM2 misc_feature23512 2130 + 0.503756
NA pHCM2 RBS73393 4 - 0.75
NA pHCM2 repeat_unit70443 25 - 0.56
NA pHCM2 misc_feature93906 483 - 0.52588
NA pHCM2 misc_feature66242 609 + 0.538588
NA pHCM2 misc_feature8658 5613 - 0.538037
NA pHCM2 repeat_unit104296 21 + 0.47619
NA pHCM2 misc_feature94488 354 - 0.536723
NA pHCM2 repeat_unit62457 24 - 0.416667
NA pHCM2 misc_feature104881 738 + 0.531165
NA pHCM2 misc_feature61546 24 - 0.666667
NA pHCM2 repeat_unit1565 57 + 0.333333
NA pHCM2 repeat_unit105814 21 + 0.52381
NA pHCM2 misc_feature30488 24 - 0.541667
NA pHCM2 misc_feature1 232 + 0.512931
NA pHCM2 RBS15285 5 - 0.4
NA pHCM2 misc_feature40609 1415 + 0.489046
NA pHCM2 RBS13026 6 - 0.333333
NA pHCM2 repeat_unit77235 59 + 0.38983
NA pHCM2 RBS76947 5 - 0.6
NA pHCM2 repeat_unit87215 26 - 0.307692
NA pHCM2 RBS2499 7 - 0.428571
NA pHCM2 RBS21399 4 - 0.75
NA pHCM2 RBS37558 5 - 0.8
NA pHCM2 RBS72045 5 - 0.8
NA pHCM2 repeat_unit106104 21 + 0.428571
NA pHCM2 misc_feature32830 24 + 0.625
NA pHCM2 RBS78671 4 - 0.75
NA pHCM2 RBS3869 6 - 0.5
NA pHCM2 tRNA22945 75 - 0.546667
NA pHCM2 RBS37223 5 - 0.6
NA pHCM2 repeat_unit87184 26 + 0.269231
NA pHCM2 RBS79222 5 - 0.8
NA pHCM2 RBS36 8 - 0.5
NA pHCM2 repeat_unit106025 21 - 0.428571
NA pHCM2 RBS34520 5 - 0.8
NA pHCM2 RBS1492 6 - 0.5
NA pHCM2 RBS40225 6 - 0.5
NA pHCM2 misc_feature87625 21 - 0.619048
NA pHCM2 repeat_unit106317 21 - 0.571429
NA pHCM2 misc_feature3046 213 - 0.544601
NA pHCM2 misc_feature24628 849 - 0.531213
NA pHCM2 RBS69459 6 + 0.333333
NA pHCM2 RBS58779 5 - 0.4
NA pHCM2 RBS6723 4 - 0.75
HCM2.0001c hypothetical proteinpHCM2 CDS106342 175 - 0.565714
HCM2.0001c hypothetical proteinpHCM2 CDS1 29 - 0.517241
HCM2.0002c putative periplasmic proteinpHCM2 CDS29 306 - 0.477124
HCM2.0003c hypothetical proteinpHCM2 CDS375 276 - 0.481884
HCM2.0004c hypothetical proteinpHCM2 CDS719 411 - 0.557178
HCM2.0005c hypothetical proteinpHCM2 CDS1113 372 - 0.526882
HCM2.0006c putative lipoproteinpHCM2 CDS1647 843 - 0.5172
HCM2.0007c putative membrane proteinpHCM2 CDS2493 201 - 0.437811
HCM2.0008c putative recombinasepHCM2 CDS2785 1077 - 0.552461
HCM2.0009c hypothetical proteinpHCM2 CDS3864 267 - 0.543071
HCM2.0010c putative exonucleasepHCM2 CDS4130 945 - 0.529101
HCM2.0011c hypothetical proteinpHCM2 CDS5135 1029 - 0.524781
HCM2.0012 hypothetical proteinpHCM2 CDS6283 432 - 0.525463
HCM2.0013 putative membrane proteinpHCM2 CDS6960 591 + 0.328257
HCM2.0014c hypothetical proteinpHCM2 CDS7644 444 - 0.527027
HCM2.0015c putative DNA polymerase III alpha subunitpHCM2 CDS8084 3519 - 0.547883
HCM2.0016c putative porphyrin biosynthetic proteinpHCM2 CDS11783 1236 - 0.530744
HCM2.0017c hypothetical proteinpHCM2 CDS13115 2163 - 0.518262
HCM2.0018c hypothetical proteinpHCM2 CDS15387 213 - 0.446009
HCM2.0019 hypothetical proteinpHCM2 CDS15861 387 + 0.488372
HCM2.0020c hypothetical proteinpHCM2 CDS16239 891 - 0.50954
HCM2.0021 hypothetical proteinpHCM2 CDS17197 189 + 0.47619
HCM2.0022 hypothetical proteinpHCM2 CDS17606 492 + 0.408537
HCM2.0023c putative glutaredoxinpHCM2 CDS18262 246 - 0.50813
HCM2.0024c hypothetical proteinpHCM2 CDS18507 381 - 0.496063
HCM2.0025c hypothetical proteinpHCM2 CDS18903 204 - 0.519608
HCM2.0026c putative PhoH-like proteinpHCM2 CDS19116 834 - 0.526379
HCM2.0027c hypothetical proteinpHCM2 CDS20003 555 - 0.421622
HCM2.0028c putative lipoproteinpHCM2 CDS20835 555 - 0.461261
HCM2.0029c hypothetical proteinpHCM2 CDS21468 729 - 0.447188
HCM2.0030c hypothetical proteinpHCM2 CDS22471 291 - 0.388316
HCM2.0031c hypothetical proteinpHCM2 CDS23769 306 - 0.48366
HCM2.0032c hypothetical proteinpHCM2 CDS24071 153 - 0.51634
HCM2.0033c hypothetical proteinpHCM2 CDS24223 207 - 0.478261
HCM2.0034c hypothetical proteinpHCM2 CDS24419 177 - 0.457627
HCM2.0035c putative DNA ligasepHCM2 CDS24595 1323 - 0.529101
HCM2.0036c hypothetical proteinpHCM2 CDS25952 258 - 0.515504
HCM2.0037 hypothetical proteinpHCM2 CDS26379 165 + 0.448485
HCM2.0038c hypothetical proteinpHCM2 CDS26510 795 - 0.544654
HCM2.0039 hypothetical proteinpHCM2 CDS27488 1053 + 0.415005
HCM2.0040c hypothetical proteinpHCM2 CDS28542 1212 - 0.519802
HCM2.0041c putative DNA helicasepHCM2 CDS29816 1341 - 0.548844
HCM2.0042c hypothetical proteinpHCM2 CDS31217 726 - 0.524793
HCM2.0043 hypothetical proteinpHCM2 CDS32224 1056 + 0.453598
HCM2.0044c hypothetical proteinpHCM2 CDS33349 756 - 0.386243
HCM2.0045c hypothetical proteinpHCM2 CDS34153 360 - 0.525
HCM2.0046c hypothetical proteinpHCM2 CDS34512 666 - 0.489489
HCM2.0047 hypothetical proteinpHCM2 CDS35508 552 + 0.463768
HCM2.0048c hypothetical proteinpHCM2 CDS36110 345 - 0.501449
HCM2.0049c hypothetical proteinpHCM2 CDS36523 693 - 0.561328
HCM2.0050c hypothetical proteinpHCM2 CDS37229 324 - 0.493827
HCM2.0051c putative phage tail proteinpHCM2 CDS37667 2553 - 0.46181
HCM2.0052c putative phage tail proteinpHCM2 CDS40302 4389 - 0.512417
HCM2.0053c putative phage tail proteinpHCM2 CDS44705 588 - 0.530612
HCM2.0054c putative phage proteinpHCM2 CDS45280 798 - 0.546366
HCM2.0055c putative phage tail proteinpHCM2 CDS46070 732 - 0.519126
HCM2.0056c putative phage proteinpHCM2 CDS46858 336 - 0.488095
HCM2.0057c hypothetical proteinpHCM2 CDS47235 4584 - 0.563482
HCM2.0058c hypothetical proteinpHCM2 CDS51826 270 - 0.559259
HCM2.0059c hypothetical proteinpHCM2 CDS52176 318 - 0.506289
HCM2.0060c hypothetical proteinpHCM2 CDS52553 747 - 0.546185
HCM2.0061c hypothetical proteinpHCM2 CDS53374 384 - 0.476562
HCM2.0062c hypothetical proteinpHCM2 CDS53759 474 - 0.552743
HCM2.0063c hypothetical proteinpHCM2 CDS54223 459 - 0.542484
HCM2.0064c hypothetical proteinpHCM2 CDS54665 834 - 0.535971
HCM2.0065c hypothetical proteinpHCM2 CDS55498 435 - 0.51954
HCM2.0066c hypothetical proteinpHCM2 CDS55976 924 - 0.549784
HCM2.0067c hypothetical proteinpHCM2 CDS56974 876 - 0.537671
HCM2.0068c hypothetical proteinpHCM2 CDS57876 897 - 0.556299
HCM2.0069c hypothetical proteinpHCM2 CDS58795 1575 - 0.512381
HCM2.0070c hypothetical proteinpHCM2 CDS60403 1257 - 0.544153
HCM2.0071c putative DNA-binding proteinpHCM2 CDS61662 642 - 0.551402
HCM2.0072c hypothetical proteinpHCM2 CDS62499 267 - 0.520599
HCM2.0073c hypothetical proteinpHCM2 CDS62775 900 - 0.556667
HCM2.0074c hypothetical proteinpHCM2 CDS63671 255 - 0.529412
HCM2.0075c putative ABC transporter ATP-binding proteinpHCM2 CDS63918 639 - 0.544601
HCM2.0076c hypothetical proteinpHCM2 CDS64553 669 - 0.559043
HCM2.0077c hypothetical proteinpHCM2 CDS65221 699 - 0.532189
HCM2.0078 putative helicasepHCM2 CDS65984 1560 + 0.514744
HCM2.0079 hypothetical proteinpHCM2 CDS67546 279 + 0.448029
HCM2.0080 putative lipoproteinpHCM2 CDS67884 423 + 0.548463
HCM2.0081 putative transcriptional regulatorpHCM2 CDS68311 528 + 0.505682
HCM2.0082 putative periplasmic proteinpHCM2 CDS68842 309 + 0.485437
HCM2.0083 hypothetical proteinpHCM2 CDS69473 651 + 0.396313
HCM2.0084 hypothetical proteinpHCM2 CDS70208 228 + 0.372807
HCM2.0085c hypothetical proteinpHCM2 CDS71067 483 - 0.509317
HCM2.0086c hypothetical proteinpHCM2 CDS71755 288 - 0.53125
HCM2.0087c hypothetical proteinpHCM2 CDS72163 393 - 0.48855
HCM2.0088c hypothetical proteinpHCM2 CDS72684 312 - 0.541667
HCM2.0089c hypothetical proteinpHCM2 CDS73072 315 - 0.463492
HCM2.0090c hypothetical proteinpHCM2 CDS73481 219 - 0.547945
HCM2.0091c hypothetical proteinpHCM2 CDS73710 216 - 0.518519
HCM2.0092 hypothetical proteinpHCM2 CDS74068 246 + 0.52439
HCM2.0093c hypothetical proteinpHCM2 CDS75750 1191 - 0.437448
HCM2.0094c hypothetical proteinpHCM2 CDS76950 318 - 0.525157
HCM2.0095c hypothetical proteinpHCM2 CDS77352 282 - 0.450355
HCM2.0096 hypothetical proteinpHCM2 CDS77807 204 + 0.490196
HCM2.0097c hypothetical proteinpHCM2 CDS78071 288 - 0.496528
HCM2.0098c hypothetical proteinpHCM2 CDS78355 312 - 0.525641
HCM2.0099c hypothetical proteinpHCM2 CDS78675 543 - 0.499079
HCM2.0100c hypothetical proteinpHCM2 CDS79214 642 - 0.538941
HCM2.0101c hypothetical proteinpHCM2 CDS79947 372 - 0.489247
HCM2.0102c hypothetical proteinpHCM2 CDS80429 174 - 0.522988
HCM2.0103c hypothetical proteinpHCM2 CDS80599 690 - 0.534783
HCM2.0104c putative DNA modification methylasepHCM2 CDS81347 1704 - 0.526995
HCM2.0105c hypothetical proteinpHCM2 CDS83174 573 - 0.516579
HCM2.0106c hypothetical proteinpHCM2 CDS83855 843 - 0.500593
HCM2.0107c hypothetical proteinpHCM2 CDS84806 189 - 0.502645
HCM2.0108 hypothetical proteinpHCM2 CDS85241 213 + 0.549296
HCM2.0109c putative ribonuclease HpHCM2 CDS85641 609 - 0.54023
HCM2.0112c hypothetical proteinpHCM2 CDS87268 594 - 0.542088
HCM2.0113c hypothetical proteinpHCM2 CDS88047 927 - 0.508091
HCM2.0114c hypothetical proteinpHCM2 CDS89018 558 - 0.544803
HCM2.0115c hypothetical proteinpHCM2 CDS89585 420 - 0.540476
HCM2.0116c hypothetical proteinpHCM2 CDS90068 645 - 0.551938
HCM2.0117c putative dihydrofolate reductasepHCM2 CDS90712 477 - 0.536688
HCM2.0118c hypothetical proteinpHCM2 CDS91185 414 - 0.548309
HCM2.0119c putative thymidylate synthasepHCM2 CDS91600 1116 - 0.540323
HCM2.0120c hypothetical proteinpHCM2 CDS92831 930 - 0.497849
HCM2.0121c putative ribonucleoside-diphosphate reductase beta subunitpHCM2 CDS93843 1143 - 0.527559
HCM2.0122c putative ribonucleoside-diphosphate reductase alpha subunitpHCM2 CDS95093 2316 - 0.547496
HCM2.0123c hypothetical proteinpHCM2 CDS97486 570 - 0.522807
HCM2.0124c hypothetical proteinpHCM2 CDS98068 747 - 0.497992
HCM2.0125c hypothetical proteinpHCM2 CDS98804 1917 - 0.53782
HCM2.0126c hypothetical proteinpHCM2 CDS100717 237 - 0.49789
HCM2.0127c hypothetical proteinpHCM2 CDS100950 1086 - 0.544199
HCM2.0128 hypothetical proteinpHCM2 CDS102462 306 + 0.486928
HCM2.0129c hypothetical proteinpHCM2 CDS102799 495 - 0.519192
HCM2.0130c hypothetical proteinpHCM2 CDS103369 645 - 0.536434
HCM2.110c hypothetical proteinpHCM2 CDS86521 135 - 0.488889
HCM2.111c hypothetical proteinpHCM2 CDS86835 231 - 0.471861
repA putative replication protein ApHCM2 CDS104758 1056 + 0.511364