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2024-05-17 14:40:20

Gene list

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Genomic element: pCD1

Number of genes found: 201

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Yersinia pestis CO92, CO-92 Biovar Orientalis
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA pCD1 repeat_region28699 9 + 1
NA pCD1 repeat_unit62808 3065 + 0.502773
NA pCD1 misc_feature54237 1 +
NA pCD1 repeat_unit49046 612 + 0.495098
NA pCD1 misc_feature16855 126 - 0.365079
NA pCD1 repeat_unit58109 1236 + 0.510518
NA pCD1 misc_feature32823 39 + 0.358974
NA pCD1 misc_feature33953 1026 + 0.436647
NA pCD1 misc_feature69046 24 - 0.625
NA pCD1 misc_feature67186 7 + 0.142857
NA pCD1 misc_feature36760 129 + 0.426357
NA pCD1 misc_feature1956 44316 + 0.437246
NA pCD1 misc_feature46267 24034 + 0.463344
NA pCD1 misc_feature16981 126 - 0.365079
NA pCD1 repeat_unit10261 40 - 0.425
NA pCD1 misc_feature23564 1 +
NA pCD1 misc_feature17236 117 - 0.435897
NA pCD1 repeat_region55733 15 - 1
NA pCD1 misc_feature18121 777 + 0.42471
NA pCD1 misc_feature46626 60 + 0.516667
NA pCD1 repeat_unit46081 186 - 0.456989
NA pCD1 misc_feature16555 120 - 0.383333
NA pCD1 misc_feature65339 522 + 0.47318
NA pCD1 repeat_unit58855 395 + 0.493671
NA pCD1 misc_feature52838 39 - 0.358974
NA pCD1 misc_feature68823 2 +
NA pCD1 misc_feature65345 27 + 0.555556
NA pCD1 misc_feature42511 33 + 0.272727
NA pCD1 repeat_unit18602 329 + 0.43769
NA pCD1 misc_feature1434 24 + 0.625
NA pCD1 misc_feature33183 744 + 0.432796
NA pCD1 misc_feature36649 261 + 0.452107
NA pCD1 misc_feature58841 11460 + 0.462216
NA pCD1 misc_feature37872 1407 + 0.459133
NA pCD1 repeat_unit59944 395 - 0.496203
NA pCD1 repeat_unit54563 137 + 0.518248
NA pCD1 misc_feature50547 1 +
NA pCD1 repeat_unit15574 274 - 0.448905
NA pCD1 misc_feature51732 1 + 1
NA pCD1 misc_RNA57257 75 - 0.48
NA pCD1 repeat_unit1 1956 + 0.514826
NA pCD1 misc_feature53722 11 + 0.545455
NA pCD1 repeat_unit68981 1324 - 0.567976
NA pCD1 misc_feature7382 339 - 0.421829
NA pCD1 misc_feature50462 1 +
NA pCD1 misc_feature29230 30 + 0.533333
NA pCD1 misc_feature16726 129 - 0.372093
NA pCD1 misc_feature17107 126 - 0.373016
NA pCD1 misc_feature28690 24 + 0.791667
NA pCD1 repeat_unit67452 612 + 0.495098
NA pCD1 misc_feature63805 1 + 1
NA pCD1 misc_feature18852 2 +
NA pCD1 misc_feature32679 48 + 0.479167
NA pCD1 misc_feature32914 228 + 0.469298
NA pCD1 misc_feature47149 714 - 0.453782
NA pCD1 misc_feature9970 6 - 0.166667
NA pCD1 misc_feature23710 2013 - 0.464481
NA pCD1 misc_feature46267 12624 + 0.464195
NA pCD1 repeat_region52267 8 + 1
NA pCD1 misc_feature45836 7 + 0.142857
NA pCD1 misc_feature11246 158 - 0.531646
NA pCD1 misc_feature59013 6 - 0.166667
NA pCD1 misc_feature55733 5 + 1
NA pCD1 repeat_unit68026 39 - 0.487179
NA pCD1 misc_feature16426 129 - 0.44186
NA pCD1 repeat_unit9066 1235 + 0.509312
NA pCD1 misc_feature45593 361 + 0.468144
NA pCD1 repeat_unit11209 195 + 0.507692
NA pCD1 repeat_region16786 364 - 0.370879
NA pCD1 misc_feature25315 72 - 0.486111
NA pCD1 misc_feature11251 2 + 0.5
NA pCD1 repeat_unit46606 34 - 0.411765
NA pCD1 misc_feature9220 509 - 0.550098
NA pCD1 misc_feature51249 1 + 1
NA pCD1 misc_feature65501 39 + 0.538462
NA pCD1 repeat_region59944 395 - 0.496203
NA pCD1 misc_feature46262 188 + 0.441489
NA pCD1 repeat_region54367 333 + 0.498498
NA pCD1 misc_feature47290 39 - 0.589744
NA pCD1 misc_feature55839 1 + 1
NA pCD1 misc_feature5046 369 - 0.449865
NA pCD1 repeat_unit45496 34 + 0.470588
NA pCD1 misc_feature39111 102 + 0.421569
NA pCD1 repeat_unit14444 275 + 0.443636
NA pCD1 repeat_unit9066 40 + 0.425
NA pCD1 misc_feature2304 679 + 0.544919
NA pCD1 repeat_unit66851 1214 + 0.499176
NA pCD1 misc_feature31351 891 + 0.485971
NA pCD1 misc_feature55970 151 - 0.357616
NA pCD1 repeat_unit54366 234 + 0.487179
NA pCD1 misc_feature28273 990 + 0.515152
NA pCD1 repeat_unit45496 1144 + 0.450175
NA pCD1 misc_feature19188 1 + 1
NA pCD1 repeat_unit58108 194 + 0.489691
NA pCD1 repeat_unit58403 137 - 0.49635
NA pCD1 repeat_unit66851 40 + 0.45
NA pCD1 misc_feature32286 600 + 0.438333
NA pCD1 misc_feature35608 33 + 0.424242
NA pCD1 repeat_region62474 381 + 0.509186
NA pCD1 repeat_region5813 270 + 0.511111
NA pCD1 misc_feature46635 195 + 0.497436
NA pCD1 misc_feature112 84 + 0.5
NA pCD1 misc_feature59888 5 + 0.6
NA pCD1 repeat_region25686 8 - 1
YPCD1.01 putative transposaseSubName: Full=IS transposase; SubName: Full=ORF 78; SubName: Full=ORF12; SubName: Full=Putative transposase; SubName: Full=Putative transposase, N end of IS100 transframe protein; SubName: Full=Putative transposase-orf1 protein; SubName: Full=Transposase; SubName: Full=Transposase for insertion sequence IS100; pCD1 CDS88 1023 + 0.527859
YPCD1.02 putative ATP-binding proteinSubName: Full=ATP-binding protein; SubName: Full=ORF 77; SubName: Full=ORF11; SubName: Full=Putative ATP-binding protein; SubName: Full=Putative transposase; SubName: Full=Transposase; pCD1 CDS1110 780 + 0.503846
YPCD1.03c SubName: Full=YPCD1.03c protein; Flags: Fragment; pCD1 CDS1956 249 - 0.497992
YPCD1.04 SubName: Full=YPCD1.04 protein; Flags: Fragment; pCD1 CDS2304 648 + 0.546296
YPCD1.05c putative yopE chaperoneRecName: Full=YopE regulator; pCD1 CDS3014 393 - 0.409669
YPCD1.06 putative outer membrane virulence proteinRecName: Full=Outer membrane virulence protein YopE; pCD1 CDS3600 660 + 0.510606
YPCD1.07 hypothetical protein YPCD1.07SubName: Full=Uncharacterized protein; pCD1 CDS4261 297 + 0.373737
YPCD1.08c hypothetical protein YPCD1.08cSubName: Full=ParE toxin protein; SubName: Full=Putative plasmid stabilization element ParE; SubName: Full=Uncharacterized protein; pCD1 CDS4399 300 - 0.38
YPCD1.09c hypothetical protein YPCD1.09cRecName: Full=Antitoxin ParD; pCD1 CDS4691 276 - 0.431159
YPCD1.10c SubName: Full=YPCD1.10c protein; Flags: Fragment; pCD1 CDS5149 249 - 0.429719
YPCD1.11 putative pseudogene pCD1 pseudo5498 132 + 0.469697
YPCD1.12c putative plasmid partitioning control proteinSubName: Full=Plasmid partitioning control protein; SubName: Full=Putative plasmid partitioning control protein; pCD1 CDS6195 963 - 0.417445
YPCD1.13c putative plasmid partitioning transcription repressorSubName: Full=Chromosome partitioning protein ParA; SubName: Full=Putative plasmid partitioning transcription repressor; SubName: Full=SopAB transcription repressor; pCD1 CDS7157 1167 - 0.441302
YPCD1.14c putative transposase remnantSubName: Full=Putative transposase remnant; Flags: Fragment; pCD1 CDS9123 264 - 0.503788
YPCD1.15c hypothetical protein YPCD1.15cSubName: Full=Transposase; SubName: Full=Uncharacterized protein; pCD1 CDS9429 459 - 0.551198
YPCD1.16c hypothetical protein YPCD1.16cSubName: Full=Uncharacterized protein; pCD1 CDS9911 324 - 0.481481
YPCD1.17c putative lipoprotein precursor pseudogene pCD1 pseudo10338 709 - 0.488011
YPCD1.18c SubName: Full=YPCD1.18c protein; Flags: Fragment; pCD1 CDS11260 144 - 0.527778
YPCD1.19c putative virulence determinant proteinSubName: Full=Putative virulence determinant protein; SubName: Full=Type III secretion negative modulator of injection; SubName: Full=Yop targeting protein; SubName: Full=YopK (YopQ) homolog; pCD1 CDS11562 549 - 0.335155
YPCD1.20 putative cytotoxic effector proteinRecName: Full=Cysteine protease YopT; EC=3.4.22.-; pCD1 CDS12610 969 + 0.431373
YPCD1.21 putative yopT chaperoneRecName: Full=Chaperone protein SycT; pCD1 CDS13578 399 + 0.411028
YPCD1.22c hypothetical protein YPCD1.22cSubName: Full=Uncharacterized protein; pCD1 CDS14020 390 - 0.276923
YPCD1.23 hypothetical protein YPCD1.23SubName: Full=Uncharacterized protein; pCD1 CDS14681 420 + 0.388095
YPCD1.24c SubName: Full=YPCD1.24c protein; Flags: Fragment; pCD1 CDS15628 219 - 0.461187
YPCD1.25 SubName: Full=YPCD1.25 protein; Flags: Fragment; pCD1 CDS15976 318 + 0.440252
YPCD1.26c putative targeted effector proteinRecName: Full=Outer membrane protein YopM; pCD1 CDS16336 1230 - 0.389431
YPCD1.27 putative transposase pseudogene pCD1 pseudo18229 655 + 0.416794
YPCD1.28c putative Yop negative regulation/targeting componentSubName: Full=Putative Yop negative regulation/targeting component; SubName: Full=Putative Yop negative regulation/targeting component YopD; SubName: Full=Type III secretion host injection and negative regulator protein; SubName: Full=Yop targeting negative regulator; SubName: Full=YopD homolog; pCD1 CDS19294 921 - 0.431053
YPCD1.29c putative Yop targeting proteinSubName: Full=Putative Yop targeting protein; SubName: Full=Putative Yop targeting protein YopB; SubName: Full=Type III secretion host injection protein; SubName: Full=Yop targeting protein; SubName: Full=YopB homolog; pCD1 CDS20233 1206 - 0.466833
YPCD1.30c putative yopB/yopD chaperoneRecName: Full=Low calcium response locus protein H; pCD1 CDS21416 507 - 0.441815
YPCD1.31c putative V antigen, antihost protein/regulatorRecName: Full=Virulence-associated V antigen; AltName: Full=Low calcium response locus protein V; pCD1 CDS21935 981 - 0.377166
YPCD1.32c putative Yop regulatorRecName: Full=Low calcium response locus protein G; pCD1 CDS22917 288 - 0.46875
YPCD1.33c hypothetical protein lcrRRecName: Full=Low calcium response locus protein R; pCD1 CDS23246 441 - 0.487528
YPCD1.34c putative membrane-bound Yop proteinRecName: Full=Low calcium response locus protein D; pCD1 CDS23683 2115 - 0.463357
YPCD1.35c putative type III secretion proteinRecName: Full=Chaperone protein YscY; AltName: Full=Yop proteins translocation protein Y; pCD1 CDS25784 345 - 0.46087
YPCD1.36c putative type III secretion proteinRecName: Full=Yop proteins translocation protein X; pCD1 CDS26125 369 - 0.495935
YPCD1.37c putative type III secretion proteinRecName: Full=Chaperone protein SycN; pCD1 CDS26490 372 - 0.526882
YPCD1.38c putative Yop secretion and targeting proteinRecName: Full=Protein TyeA; pCD1 CDS26848 279 - 0.433692
YPCD1.39c putative membrane-bound Yop targeting proteinRecName: Full=Outer membrane protein YopN; AltName: Full=LcrE; AltName: Full=Yop4b; pCD1 CDS27107 882 - 0.461451
YPCD1.40 putative Yops secretion ATP synthaseSubName: Full=Putative Yops secretion ATP synthase; SubName: Full=Putative Yops secretion ATP synthase YscN; SubName: Full=Yops secretion ATPase YscN homolog; SubName: Full=Yops secretion protein; pCD1 CDS28186 1320 + 0.508333
YPCD1.41 putative type III secretion proteinSubName: Full=Putative type III secretion protein; SubName: Full=Putative type III secretion protein YscO; SubName: Full=Type III secretion protein; SubName: Full=Type III secretion spans bacterial envelope protein; SubName: Full=Yop proteins translocation protein O; SubName: Full=YscO; pCD1 CDS29502 465 + 0.458065
YPCD1.42 putative type III secretion proteinRecName: Full=Yop proteins translocation protein P; pCD1 CDS29966 1368 + 0.486842
YPCD1.43 putative type III secretion proteinRecName: Full=Yop proteins translocation protein Q; pCD1 CDS31330 924 + 0.481602
YPCD1.44 putative Yop secretion membrane proteinRecName: Full=Yop proteins translocation protein R; pCD1 CDS32250 654 + 0.43578
YPCD1.45 putative type III secretion proteinRecName: Full=Yop proteins translocation protein S; pCD1 CDS32905 267 + 0.453184
YPCD1.46 putative type III secretion proteinRecName: Full=Yop proteins translocation protein T; pCD1 CDS33168 786 + 0.428753
YPCD1.47 putative type III secretion proteinRecName: Full=Yop proteins translocation protein U; pCD1 CDS33953 1065 + 0.431925
YPCD1.48 putative Yop targeting lipoproteinSubName: Full=Pre-lipoprotein VirG homolog; SubName: Full=Putative Yop targeting lipoprotein; SubName: Full=Putative Yop targeting lipoprotein VirG; SubName: Full=YscC lipoprotein chaperone; pCD1 CDS35593 396 + 0.444444
YPCD1.49 putative thermoregulatory proteinRecName: Full=Thermoregulatory protein LcrF; pCD1 CDS36112 816 + 0.416667
YPCD1.50 hypothetical protein YPCD1.50RecName: Full=Yop proteins translocation protein A; pCD1 CDS37006 99 + 0.313131
YPCD1.51 hypothetical protein YPCD1.51RecName: Full=Chaperone protein YscB; AltName: Full=Yop proteins translocation protein B; pCD1 CDS37330 414 + 0.417874
YPCD1.52 putative type III secretion proteinSubName: Full=KIM5; SubName: Full=Putative type III secretion protein; SubName: Full=Putative type III secretion protein YscC; SubName: Full=Type III secretion outermembrane pore forming protein; SubName: Full=Type III secretion protein; SubName: Full=Yop proteins translocation protein C homolog; pCD1 CDS37749 1824 + 0.454496
YPCD1.53 putative type III secretion proteinSubName: Full=Putative type III secretion protein; SubName: Full=Putative type III secretion protein YscD; SubName: Full=Type III secretion protein; SubName: Full=Yop proteins translocation protein D homolog; pCD1 CDS39569 1260 + 0.46746
YPCD1.54 putative type III secretion proteinSubName: Full=Putative type III secretion protein; SubName: Full=Putative type III secretion protein YscE; SubName: Full=Type III secretion protein; SubName: Full=Yop proteins translocation protein E homolog; pCD1 CDS40825 201 + 0.422886
YPCD1.55 putative type III secretion proteinSubName: Full=Putative type III secretion protein; SubName: Full=Putative type III secretion protein YscF; SubName: Full=Type III secretion cytoplasmic protein; SubName: Full=Type III secretion protein; SubName: Full=Yop proteins translocation protein F homolog; pCD1 CDS41026 264 + 0.416667
YPCD1.56 putative type III secretion proteinSubName: Full=Putative type III secretion protein; SubName: Full=Putative type III secretion protein YscG; SubName: Full=Type III secretion protein; SubName: Full=Type III secretion spans bacterial envelope protein; SubName: Full=Yop proteins translocation protein G homolog; pCD1 CDS41291 348 + 0.439655
YPCD1.57 putative type III secretion proteinRecName: Full=Yop proteins translocation protein H; AltName: Full=Low calcium response locus protein P; pCD1 CDS41635 498 + 0.429719
YPCD1.58 putative type III secretion proteinRecName: Full=Yop proteins translocation protein I; AltName: Full=Low calcium response locus protein O; pCD1 CDS42133 348 + 0.468391
YPCD1.59 putative type III secretion lipoproteinRecName: Full=Yop proteins translocation lipoprotein J; AltName: Full=Lipoprotein YlpB; AltName: Full=Low calcium response locus protein KA; Flags: Precursor; pCD1 CDS42487 735 + 0.428571
YPCD1.60 putative type III secretion proteinRecName: Full=Yop proteins translocation protein K; AltName: Full=Low calcium response locus protein KB; pCD1 CDS43221 630 + 0.485714
YPCD1.61 putative type III secretion proteinRecName: Full=Yop proteins translocation protein L; AltName: Full=Low calcium response locus protein KC; pCD1 CDS43796 666 + 0.448949
YPCD1.62 putative type III secretion regulatory proteinRecName: Full=Yop proteins translocation protein M; AltName: Full=Low calcium response locus protein Q; pCD1 CDS44686 348 + 0.479885
YPCD1.63 putative transposase ORFARecName: Full=Low calcium response locus protein S; pCD1 CDS45581 267 + 0.434457
YPCD1.64 putative transposase ORFBRecName: Full=Low calcium response locus protein T; pCD1 CDS45871 435 + 0.455172
YPCD1.65 putative transposaseSubName: Full=Putative transposase; pCD1 CDS46302 309 + 0.459547
YPCD1.66 SubName: Full=YPCD1.66 protein; Flags: Fragment; pCD1 CDS46623 279 + 0.473118
YPCD1.67c putative protein-tyrosine phosphatase Yop effectorSubName: Full=Targeted effector protein; SubName: Full=Type III secretion injected virulence protein; SubName: Full=Uncharacterized protein; SubName: Full=YopH; pCD1 CDS47122 1407 - 0.474058
YPCD1.68c SubName: Full=O68; SubName: Full=Uncharacterized protein; SubName: Full=YPCD1.68c protein; pCD1 CDS48811 207 - 0.608696
YPCD1.69 SubName: Full=YPCD1.69 protein; Flags: Fragment; pCD1 CDS49044 582 + 0.493127
YPCD1.70c SubName: Full=YPCD1.70c protein; Flags: Fragment; pCD1 CDS49657 99 - 0.40404
YPCD1.71c putative targeted effector proteinSubName: Full=Putative targeted effector protein; pCD1 CDS50211 867 - 0.344867
YPCD1.72c putative targeted effector protein kinaseRecName: Full=Protein kinase YpkA; Short=Protein kinase A; EC=2.7.11.1; AltName: Full=Targeted effector protein kinase; Flags: Precursor; pCD1 CDS51473 2199 - 0.481583
YPCD1.73c hypothetical protein YPCD1.73cSubName: Full=Hypothetial protein; SubName: Full=Uncharacterized protein; pCD1 CDS53679 450 - 0.451111
YPCD1.74c SubName: Full=YPCD1.74c protein; Flags: Fragment; pCD1 CDS54368 117 - 0.470085
YPCD1.75c SubName: Full=YPCD1.75c protein; Flags: Fragment; pCD1 CDS54541 153 - 0.509804
YPCD1.76c pCD1 pseudo55577 168 - 0.589286
YPCD1.77c putative replication initiation proteinSubName: Full=Putative replication initiation protein; SubName: Full=Replication protein; SubName: Full=Replication protein RepA-like protein; pCD1 CDS56291 867 - 0.542099
YPCD1.78c putative repA translation proteinSubName: Full=Putative repA translation protein; SubName: Full=RepA translation protein; pCD1 CDS57150 75 - 0.44
YPCD1.79c putative replication transcriptional regulatorSubName: Full=Putative replication transcriptional regulator; SubName: Full=Replication protein; SubName: Full=Replication protein RepB homolog; SubName: Full=Replication protein RepB-like protein; pCD1 CDS57466 255 - 0.423529
YPCD1.80c putative pseudogene pCD1 pseudo57861 246 - 0.495935
YPCD1.81 SubName: Full=YPCD1.81 protein; Flags: Fragment; pCD1 CDS58307 234 + 0.542735
YPCD1.82c hypothetical protein YPCD1.82cSubName: Full=Uncharacterized protein; pCD1 CDS58523 408 - 0.539216
YPCD1.83c hypothetical protein YPCD1.83cSubName: Full=Uncharacterized protein; pCD1 CDS58954 324 - 0.487654
YPCD1.84c hypothetical protein YPCD1.84cSubName: Full=Putative DNA helicase; SubName: Full=Uncharacterized protein; pCD1 CDS59443 492 - 0.554878
YPCD1.85 SubName: Full=YPCD1.85 protein; Flags: Fragment; pCD1 CDS59946 294 + 0.503401
YPCD1.86c putative pseudogene pCD1 pseudo60307 189 - 0.386243
YPCD1.87c putative yadA invasin pseudogene pCD1 pseudo60568 1065 - 0.433803
YPCD1.88c putative yadA invasin pseudogene N-terminus pCD1 pseudo61632 237 - 0.42616
YPCD1.89 SubName: Full=Putative transposase homolog; SubName: Full=YPCD1.89 protein; pCD1 CDS62474 381 + 0.509186
YPCD1.90c putative transposaseSubName: Full=Putative transposase; SubName: Full=Transposase (Tn1000) homolog; pCD1 CDS62851 2316 - 0.519862
YPCD1.91 putative resolvaseSubName: Full=Putative resolvase; SubName: Full=Resolvase; SubName: Full=Transposon gamma-delta resolvase (Transposon TN1000) homolog; pCD1 CDS65330 552 + 0.46558
YPCD1.92 hypothetical protein YPCD1.92SubName: Full=Uncharacterized protein; pCD1 CDS66503 330 + 0.281818
YPCD1.93 putative transposaseSubName: Full=Putative IS1617 transposase; SubName: Full=Putative transposase; SubName: Full=Transposase; pCD1 CDS66932 267 + 0.479401
YPCD1.94 putative transposaseSubName: Full=Putative transposase; pCD1 CDS67222 810 + 0.504938
YPCD1.95c putative yopH targeting proteinSubName: Full=Putative yopH targeting protein; SubName: Full=Putative yopH targeting protein SycH; SubName: Full=YopH chaperone; SubName: Full=YopH chaperone SycH protein homolog; pCD1 CDS68179 426 - 0.41784
YPCD1.96c putative transposaseSubName: Full=Putative transposase; pCD1 CDS68947 432 - 0.569444
YPCD1.97c putative transposaseSubName: Full=Putative transposase; pCD1 CDS69378 927 - 0.558792