Gene list
Applied filters:
Genomic element: pCD1
Number of genes found: 201
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Yersinia pestis CO92, CO-92 Biovar Orientalis | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | pCD1 | misc_feature | 33953 | 1026 | + | 0.436647 | ||
NA | pCD1 | repeat_unit | 18602 | 329 | + | 0.43769 | ||
NA | pCD1 | repeat_unit | 9066 | 40 | + | 0.425 | ||
NA | pCD1 | misc_feature | 25315 | 72 | - | 0.486111 | ||
NA | pCD1 | misc_feature | 2304 | 679 | + | 0.544919 | ||
NA | pCD1 | misc_feature | 63805 | 1 | + | 1 | ||
NA | pCD1 | misc_feature | 47149 | 714 | - | 0.453782 | ||
NA | pCD1 | misc_feature | 52838 | 39 | - | 0.358974 | ||
NA | pCD1 | misc_feature | 28273 | 990 | + | 0.515152 | ||
NA | pCD1 | misc_feature | 59013 | 6 | - | 0.166667 | ||
NA | pCD1 | misc_feature | 17236 | 117 | - | 0.435897 | ||
NA | pCD1 | misc_feature | 16426 | 129 | - | 0.44186 | ||
NA | pCD1 | repeat_unit | 11209 | 195 | + | 0.507692 | ||
NA | pCD1 | misc_feature | 65501 | 39 | + | 0.538462 | ||
NA | pCD1 | misc_feature | 11251 | 2 | + | 0.5 | ||
NA | pCD1 | misc_feature | 46267 | 12624 | + | 0.464195 | ||
NA | pCD1 | repeat_region | 62474 | 381 | + | 0.509186 | ||
NA | pCD1 | misc_feature | 65345 | 27 | + | 0.555556 | ||
NA | pCD1 | misc_feature | 69046 | 24 | - | 0.625 | ||
NA | pCD1 | misc_feature | 18121 | 777 | + | 0.42471 | ||
NA | pCD1 | misc_feature | 16981 | 126 | - | 0.365079 | ||
NA | pCD1 | misc_feature | 54237 | 1 | + | |||
NA | pCD1 | repeat_unit | 66851 | 40 | + | 0.45 | ||
NA | pCD1 | repeat_region | 28699 | 9 | + | 1 | ||
NA | pCD1 | misc_feature | 46626 | 60 | + | 0.516667 | ||
NA | pCD1 | misc_feature | 32914 | 228 | + | 0.469298 | ||
NA | pCD1 | misc_feature | 16726 | 129 | - | 0.372093 | ||
NA | pCD1 | misc_feature | 65339 | 522 | + | 0.47318 | ||
NA | pCD1 | repeat_unit | 58109 | 1236 | + | 0.510518 | ||
NA | pCD1 | misc_feature | 45836 | 7 | + | 0.142857 | ||
NA | pCD1 | misc_feature | 32823 | 39 | + | 0.358974 | ||
NA | pCD1 | misc_feature | 46267 | 24034 | + | 0.463344 | ||
NA | pCD1 | repeat_unit | 54563 | 137 | + | 0.518248 | ||
NA | pCD1 | repeat_unit | 1 | 1956 | + | 0.514826 | ||
NA | pCD1 | misc_feature | 51732 | 1 | + | 1 | ||
NA | pCD1 | misc_feature | 68823 | 2 | + | |||
NA | pCD1 | misc_feature | 37872 | 1407 | + | 0.459133 | ||
NA | pCD1 | repeat_unit | 58403 | 137 | - | 0.49635 | ||
NA | pCD1 | misc_feature | 23564 | 1 | + | |||
NA | pCD1 | misc_feature | 50547 | 1 | + | |||
NA | pCD1 | misc_feature | 53722 | 11 | + | 0.545455 | ||
NA | pCD1 | repeat_unit | 45496 | 1144 | + | 0.450175 | ||
NA | pCD1 | misc_feature | 16855 | 126 | - | 0.365079 | ||
NA | pCD1 | misc_feature | 67186 | 7 | + | 0.142857 | ||
NA | pCD1 | repeat_unit | 46606 | 34 | - | 0.411765 | ||
NA | pCD1 | repeat_unit | 10261 | 40 | - | 0.425 | ||
NA | pCD1 | repeat_unit | 67452 | 612 | + | 0.495098 | ||
NA | pCD1 | misc_feature | 33183 | 744 | + | 0.432796 | ||
NA | pCD1 | misc_feature | 55970 | 151 | - | 0.357616 | ||
NA | pCD1 | misc_feature | 9970 | 6 | - | 0.166667 | ||
NA | pCD1 | repeat_unit | 9066 | 1235 | + | 0.509312 | ||
NA | pCD1 | repeat_region | 5813 | 270 | + | 0.511111 | ||
NA | pCD1 | misc_feature | 32679 | 48 | + | 0.479167 | ||
NA | pCD1 | repeat_region | 25686 | 8 | - | 1 | ||
NA | pCD1 | misc_feature | 19188 | 1 | + | 1 | ||
NA | pCD1 | misc_feature | 29230 | 30 | + | 0.533333 | ||
NA | pCD1 | misc_feature | 1956 | 44316 | + | 0.437246 | ||
NA | pCD1 | misc_feature | 112 | 84 | + | 0.5 | ||
NA | pCD1 | repeat_region | 55733 | 15 | - | 1 | ||
NA | pCD1 | misc_feature | 51249 | 1 | + | 1 | ||
NA | pCD1 | repeat_unit | 62808 | 3065 | + | 0.502773 | ||
NA | pCD1 | misc_feature | 36649 | 261 | + | 0.452107 | ||
NA | pCD1 | misc_feature | 55839 | 1 | + | 1 | ||
NA | pCD1 | repeat_region | 52267 | 8 | + | 1 | ||
NA | pCD1 | misc_feature | 32286 | 600 | + | 0.438333 | ||
NA | pCD1 | misc_feature | 5046 | 369 | - | 0.449865 | ||
NA | pCD1 | repeat_region | 16786 | 364 | - | 0.370879 | ||
NA | pCD1 | misc_feature | 55733 | 5 | + | 1 | ||
NA | pCD1 | misc_feature | 46635 | 195 | + | 0.497436 | ||
NA | pCD1 | misc_feature | 50462 | 1 | + | |||
NA | pCD1 | repeat_unit | 46081 | 186 | - | 0.456989 | ||
NA | pCD1 | misc_feature | 58841 | 11460 | + | 0.462216 | ||
NA | pCD1 | repeat_region | 54367 | 333 | + | 0.498498 | ||
NA | pCD1 | misc_feature | 36760 | 129 | + | 0.426357 | ||
NA | pCD1 | misc_feature | 31351 | 891 | + | 0.485971 | ||
NA | pCD1 | repeat_unit | 45496 | 34 | + | 0.470588 | ||
NA | pCD1 | repeat_unit | 58855 | 395 | + | 0.493671 | ||
NA | pCD1 | repeat_unit | 54366 | 234 | + | 0.487179 | ||
NA | pCD1 | misc_feature | 47290 | 39 | - | 0.589744 | ||
NA | pCD1 | misc_RNA | 57257 | 75 | - | 0.48 | ||
NA | pCD1 | repeat_unit | 14444 | 275 | + | 0.443636 | ||
NA | pCD1 | misc_feature | 45593 | 361 | + | 0.468144 | ||
NA | pCD1 | misc_feature | 23710 | 2013 | - | 0.464481 | ||
NA | pCD1 | repeat_unit | 68026 | 39 | - | 0.487179 | ||
NA | pCD1 | repeat_unit | 59944 | 395 | - | 0.496203 | ||
NA | pCD1 | misc_feature | 46262 | 188 | + | 0.441489 | ||
NA | pCD1 | misc_feature | 11246 | 158 | - | 0.531646 | ||
NA | pCD1 | misc_feature | 17107 | 126 | - | 0.373016 | ||
NA | pCD1 | repeat_region | 59944 | 395 | - | 0.496203 | ||
NA | pCD1 | misc_feature | 1434 | 24 | + | 0.625 | ||
NA | pCD1 | repeat_unit | 49046 | 612 | + | 0.495098 | ||
NA | pCD1 | misc_feature | 18852 | 2 | + | |||
NA | pCD1 | repeat_unit | 58108 | 194 | + | 0.489691 | ||
NA | pCD1 | misc_feature | 28690 | 24 | + | 0.791667 | ||
NA | pCD1 | repeat_unit | 15574 | 274 | - | 0.448905 | ||
NA | pCD1 | misc_feature | 39111 | 102 | + | 0.421569 | ||
NA | pCD1 | misc_feature | 7382 | 339 | - | 0.421829 | ||
NA | pCD1 | misc_feature | 16555 | 120 | - | 0.383333 | ||
NA | pCD1 | misc_feature | 9220 | 509 | - | 0.550098 | ||
NA | pCD1 | misc_feature | 35608 | 33 | + | 0.424242 | ||
NA | pCD1 | repeat_unit | 68981 | 1324 | - | 0.567976 | ||
NA | pCD1 | misc_feature | 59888 | 5 | + | 0.6 | ||
NA | pCD1 | misc_feature | 42511 | 33 | + | 0.272727 | ||
NA | pCD1 | repeat_unit | 66851 | 1214 | + | 0.499176 | ||
YPCD1.01 | putative transposase | pCD1 | CDS | 88 | 1023 | + | 0.527859 | |
YPCD1.02 | putative ATP-binding protein | pCD1 | CDS | 1110 | 780 | + | 0.503846 | |
YPCD1.03c | pCD1 | CDS | 1956 | 249 | - | 0.497992 | ||
YPCD1.04 | pCD1 | CDS | 2304 | 648 | + | 0.546296 | ||
YPCD1.05c | putative yopE chaperone | pCD1 | CDS | 3014 | 393 | - | 0.409669 | |
YPCD1.06 | putative outer membrane virulence protein | pCD1 | CDS | 3600 | 660 | + | 0.510606 | |
YPCD1.07 | hypothetical protein YPCD1.07 | pCD1 | CDS | 4261 | 297 | + | 0.373737 | |
YPCD1.08c | hypothetical protein YPCD1.08c | pCD1 | CDS | 4399 | 300 | - | 0.38 | |
YPCD1.09c | hypothetical protein YPCD1.09c | pCD1 | CDS | 4691 | 276 | - | 0.431159 | |
YPCD1.10c | pCD1 | CDS | 5149 | 249 | - | 0.429719 | ||
YPCD1.11 | putative pseudogene | pCD1 | pseudo | 5498 | 132 | + | 0.469697 | |
YPCD1.12c | putative plasmid partitioning control protein | pCD1 | CDS | 6195 | 963 | - | 0.417445 | |
YPCD1.13c | putative plasmid partitioning transcription repressor | pCD1 | CDS | 7157 | 1167 | - | 0.441302 | |
YPCD1.14c | putative transposase remnant | pCD1 | CDS | 9123 | 264 | - | 0.503788 | |
YPCD1.15c | hypothetical protein YPCD1.15c | pCD1 | CDS | 9429 | 459 | - | 0.551198 | |
YPCD1.16c | hypothetical protein YPCD1.16c | pCD1 | CDS | 9911 | 324 | - | 0.481481 | |
YPCD1.17c | putative lipoprotein precursor pseudogene | pCD1 | pseudo | 10338 | 709 | - | 0.488011 | |
YPCD1.18c | pCD1 | CDS | 11260 | 144 | - | 0.527778 | ||
YPCD1.19c | putative virulence determinant protein | pCD1 | CDS | 11562 | 549 | - | 0.335155 | |
YPCD1.20 | putative cytotoxic effector protein | pCD1 | CDS | 12610 | 969 | + | 0.431373 | |
YPCD1.21 | putative yopT chaperone | pCD1 | CDS | 13578 | 399 | + | 0.411028 | |
YPCD1.22c | hypothetical protein YPCD1.22c | pCD1 | CDS | 14020 | 390 | - | 0.276923 | |
YPCD1.23 | hypothetical protein YPCD1.23 | pCD1 | CDS | 14681 | 420 | + | 0.388095 | |
YPCD1.24c | pCD1 | CDS | 15628 | 219 | - | 0.461187 | ||
YPCD1.25 | pCD1 | CDS | 15976 | 318 | + | 0.440252 | ||
YPCD1.26c | putative targeted effector protein | pCD1 | CDS | 16336 | 1230 | - | 0.389431 | |
YPCD1.27 | putative transposase pseudogene | pCD1 | pseudo | 18229 | 655 | + | 0.416794 | |
YPCD1.28c | putative Yop negative regulation/targeting component | pCD1 | CDS | 19294 | 921 | - | 0.431053 | |
YPCD1.29c | putative Yop targeting protein | pCD1 | CDS | 20233 | 1206 | - | 0.466833 | |
YPCD1.30c | putative yopB/yopD chaperone | pCD1 | CDS | 21416 | 507 | - | 0.441815 | |
YPCD1.31c | putative V antigen, antihost protein/regulator | pCD1 | CDS | 21935 | 981 | - | 0.377166 | |
YPCD1.32c | putative Yop regulator | pCD1 | CDS | 22917 | 288 | - | 0.46875 | |
YPCD1.33c | hypothetical protein lcrR | pCD1 | CDS | 23246 | 441 | - | 0.487528 | |
YPCD1.34c | putative membrane-bound Yop protein | pCD1 | CDS | 23683 | 2115 | - | 0.463357 | |
YPCD1.35c | putative type III secretion protein | pCD1 | CDS | 25784 | 345 | - | 0.46087 | |
YPCD1.36c | putative type III secretion protein | pCD1 | CDS | 26125 | 369 | - | 0.495935 | |
YPCD1.37c | putative type III secretion protein | pCD1 | CDS | 26490 | 372 | - | 0.526882 | |
YPCD1.38c | putative Yop secretion and targeting protein | pCD1 | CDS | 26848 | 279 | - | 0.433692 | |
YPCD1.39c | putative membrane-bound Yop targeting protein | pCD1 | CDS | 27107 | 882 | - | 0.461451 | |
YPCD1.40 | putative Yops secretion ATP synthase | pCD1 | CDS | 28186 | 1320 | + | 0.508333 | |
YPCD1.41 | putative type III secretion protein | pCD1 | CDS | 29502 | 465 | + | 0.458065 | |
YPCD1.42 | putative type III secretion protein | pCD1 | CDS | 29966 | 1368 | + | 0.486842 | |
YPCD1.43 | putative type III secretion protein | pCD1 | CDS | 31330 | 924 | + | 0.481602 | |
YPCD1.44 | putative Yop secretion membrane protein | pCD1 | CDS | 32250 | 654 | + | 0.43578 | |
YPCD1.45 | putative type III secretion protein | pCD1 | CDS | 32905 | 267 | + | 0.453184 | |
YPCD1.46 | putative type III secretion protein | pCD1 | CDS | 33168 | 786 | + | 0.428753 | |
YPCD1.47 | putative type III secretion protein | pCD1 | CDS | 33953 | 1065 | + | 0.431925 | |
YPCD1.48 | putative Yop targeting lipoprotein | pCD1 | CDS | 35593 | 396 | + | 0.444444 | |
YPCD1.49 | putative thermoregulatory protein | pCD1 | CDS | 36112 | 816 | + | 0.416667 | |
YPCD1.50 | hypothetical protein YPCD1.50 | pCD1 | CDS | 37006 | 99 | + | 0.313131 | |
YPCD1.51 | hypothetical protein YPCD1.51 | pCD1 | CDS | 37330 | 414 | + | 0.417874 | |
YPCD1.52 | putative type III secretion protein | pCD1 | CDS | 37749 | 1824 | + | 0.454496 | |
YPCD1.53 | putative type III secretion protein | pCD1 | CDS | 39569 | 1260 | + | 0.46746 | |
YPCD1.54 | putative type III secretion protein | pCD1 | CDS | 40825 | 201 | + | 0.422886 | |
YPCD1.55 | putative type III secretion protein | pCD1 | CDS | 41026 | 264 | + | 0.416667 | |
YPCD1.56 | putative type III secretion protein | pCD1 | CDS | 41291 | 348 | + | 0.439655 | |
YPCD1.57 | putative type III secretion protein | pCD1 | CDS | 41635 | 498 | + | 0.429719 | |
YPCD1.58 | putative type III secretion protein | pCD1 | CDS | 42133 | 348 | + | 0.468391 | |
YPCD1.59 | putative type III secretion lipoprotein | pCD1 | CDS | 42487 | 735 | + | 0.428571 | |
YPCD1.60 | putative type III secretion protein | pCD1 | CDS | 43221 | 630 | + | 0.485714 | |
YPCD1.61 | putative type III secretion protein | pCD1 | CDS | 43796 | 666 | + | 0.448949 | |
YPCD1.62 | putative type III secretion regulatory protein | pCD1 | CDS | 44686 | 348 | + | 0.479885 | |
YPCD1.63 | putative transposase ORFA | pCD1 | CDS | 45581 | 267 | + | 0.434457 | |
YPCD1.64 | putative transposase ORFB | pCD1 | CDS | 45871 | 435 | + | 0.455172 | |
YPCD1.65 | putative transposase | pCD1 | CDS | 46302 | 309 | + | 0.459547 | |
YPCD1.66 | pCD1 | CDS | 46623 | 279 | + | 0.473118 | ||
YPCD1.67c | putative protein-tyrosine phosphatase Yop effector | pCD1 | CDS | 47122 | 1407 | - | 0.474058 | |
YPCD1.68c | pCD1 | CDS | 48811 | 207 | - | 0.608696 | ||
YPCD1.69 | pCD1 | CDS | 49044 | 582 | + | 0.493127 | ||
YPCD1.70c | pCD1 | CDS | 49657 | 99 | - | 0.40404 | ||
YPCD1.71c | putative targeted effector protein | pCD1 | CDS | 50211 | 867 | - | 0.344867 | |
YPCD1.72c | putative targeted effector protein kinase | pCD1 | CDS | 51473 | 2199 | - | 0.481583 | |
YPCD1.73c | hypothetical protein YPCD1.73c | pCD1 | CDS | 53679 | 450 | - | 0.451111 | |
YPCD1.74c | pCD1 | CDS | 54368 | 117 | - | 0.470085 | ||
YPCD1.75c | pCD1 | CDS | 54541 | 153 | - | 0.509804 | ||
YPCD1.76c | pCD1 | pseudo | 55577 | 168 | - | 0.589286 | ||
YPCD1.77c | putative replication initiation protein | pCD1 | CDS | 56291 | 867 | - | 0.542099 | |
YPCD1.78c | putative repA translation protein | pCD1 | CDS | 57150 | 75 | - | 0.44 | |
YPCD1.79c | putative replication transcriptional regulator | pCD1 | CDS | 57466 | 255 | - | 0.423529 | |
YPCD1.80c | putative pseudogene | pCD1 | pseudo | 57861 | 246 | - | 0.495935 | |
YPCD1.81 | pCD1 | CDS | 58307 | 234 | + | 0.542735 | ||
YPCD1.82c | hypothetical protein YPCD1.82c | pCD1 | CDS | 58523 | 408 | - | 0.539216 | |
YPCD1.83c | hypothetical protein YPCD1.83c | pCD1 | CDS | 58954 | 324 | - | 0.487654 | |
YPCD1.84c | hypothetical protein YPCD1.84c | pCD1 | CDS | 59443 | 492 | - | 0.554878 | |
YPCD1.85 | pCD1 | CDS | 59946 | 294 | + | 0.503401 | ||
YPCD1.86c | putative pseudogene | pCD1 | pseudo | 60307 | 189 | - | 0.386243 | |
YPCD1.87c | putative yadA invasin pseudogene | pCD1 | pseudo | 60568 | 1065 | - | 0.433803 | |
YPCD1.88c | putative yadA invasin pseudogene N-terminus | pCD1 | pseudo | 61632 | 237 | - | 0.42616 | |
YPCD1.89 | pCD1 | CDS | 62474 | 381 | + | 0.509186 | ||
YPCD1.90c | putative transposase | pCD1 | CDS | 62851 | 2316 | - | 0.519862 | |
YPCD1.91 | putative resolvase | pCD1 | CDS | 65330 | 552 | + | 0.46558 | |
YPCD1.92 | hypothetical protein YPCD1.92 | pCD1 | CDS | 66503 | 330 | + | 0.281818 | |
YPCD1.93 | putative transposase | pCD1 | CDS | 66932 | 267 | + | 0.479401 | |
YPCD1.94 | putative transposase | pCD1 | CDS | 67222 | 810 | + | 0.504938 | |
YPCD1.95c | putative yopH targeting protein | pCD1 | CDS | 68179 | 426 | - | 0.41784 | |
YPCD1.96c | putative transposase | pCD1 | CDS | 68947 | 432 | - | 0.569444 | |
YPCD1.97c | putative transposase | pCD1 | CDS | 69378 | 927 | - | 0.558792 |