Gene list
Applied filters:
Genomic element: pB3
Number of genes found: 119
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Plasmid pB3 | ||||||||
---|---|---|---|---|---|---|---|---|
Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | pB3 | repeat_unit | 21286 | 8 | + | 0.5 | ||
NA | pB3 | repeat_region | 19032 | 14383 | + | 0.571091 | ||
NA | pB3 | repeat_unit | 33260 | 25 | + | 0.44 | ||
NA | pB3 | repeat_region | 21294 | 820 | + | 0.52439 | ||
NA | pB3 | repeat_unit | 26679 | 8 | + | 0.5 | ||
NA | pB3 | repeat_unit | 27612 | 7 | + | 0.714286 | ||
NA | pB3 | repeat_unit | 29964 | 7 | + | 0.428571 | ||
NA | pB3 | repeat_region | 33285 | 105 | + | 0.6 | ||
NA | pB3 | repeat_unit | 20868 | 25 | + | 0.52 | ||
NA | pB3 | repeat_unit | 20717 | 30 | + | 0.4 | ||
NA | pB3 | repeat_region | 33415 | 5 | + | 0.2 | ||
NA | pB3 | repeat_unit | 33246 | 14 | + | 0.5 | ||
NA | pB3 | repeat_region | 19055 | 86 | + | 0.604651 | ||
NA | pB3 | repeat_unit | 29098 | 7 | + | 0.714286 | ||
NA | pB3 | repeat_region | 20868 | 12417 | + | 0.572924 | ||
NA | pB3 | repeat_unit | 32257 | 25 | + | 0.44 | ||
NA | pB3 | repeat_unit | 33390 | 25 | + | 0.52 | ||
NA | pB3 | repeat_unit | 21294 | 14 | + | 0.5 | ||
NA | pB3 | repeat_unit | 20863 | 5 | + | 0.6 | ||
NA | pB3 | repeat_unit | 26665 | 14 | + | 0.5 | ||
NA | pB3 | repeat_unit | 30017 | 7 | + | 0.285714 | ||
NA | pB3 | repeat_unit | 25859 | 14 | + | 0.5 | ||
NA | pB3 | repeat_unit | 19032 | 23 | + | 0.521739 | ||
NA | putative acetyltransferase; hypothetical protein | pB3 | CDS | 31434 | 501 | + | 0.650699 | |
NA | pB3 | repeat_unit | 33285 | 5 | + | 0.6 | ||
NA | pB3 | repeat_region | 25859 | 820 | + | 0.52439 | ||
NA | pB3 | repeat_region | 32380 | 880 | + | 0.605682 | ||
NA | pB3 | repeat_region | 18918 | 114 | + | 0.570175 | ||
NA | pB3 | repeat_region | 21294 | 5385 | + | 0.569174 | ||
NA | pB3 | repeat_region | 20024 | 61 | + | 0.639344 | ||
NA | pB3 | repeat_unit | 22100 | 14 | + | 0.5 | ||
NA | pB3 | repeat_region | 32282 | 98 | + | 0.479592 | ||
NA | pB3 | repeat_unit | 29161 | 7 | + | 0.428571 | ||
NA | pB3 | repeat_unit | 32380 | 14 | + | 0.5 | ||
NA | pB3 | repeat_unit | 19027 | 5 | + | 0.2 | ||
NA | conserved hypothetical protein | pB3 | CDS | 31958 | 288 | + | 0.607639 | |
'intI1 | pB3 | pseudo | 21070 | 222 | - | 0.612613 | ||
aadA2 | streptomycin 3''-adenyltransferase | pB3 | CDS | 29171 | 792 | + | 0.518939 | |
cmlA1 | chloramphenicol efflux protein precursor | pB3 | CDS | 27819 | 1260 | + | 0.556349 | |
cmlA1 | pB3 | sig_peptide | 27819 | 135 | + | 0.511111 | ||
cmlA1 | chloramphenicol efflux protein | pB3 | mat_peptide | 27954 | 1122 | + | 0.562389 | |
incC1 | IncC1 partitioning protein | pB3 | CDS | 51354 | 1077 | - | 0.638812 | |
incC2 | IncC2 inclusion membrane protein | pB3 | CDS | 51354 | 765 | - | 0.64183 | |
intI1' | pB3 | pseudo | 26679 | 798 | - | 0.609023 | ||
kfrA | KfrA protein | pB3 | CDS | 49098 | 1032 | - | 0.75 | |
klcA | KlcA protein | pB3 | CDS | 55739 | 429 | - | 0.689977 | |
klcB | KlcB protein | pB3 | CDS | 54479 | 1209 | - | 0.705542 | |
klcC (korC) | KorC protein | pB3 | CDS | 54205 | 258 | - | 0.693798 | |
kleA | KleA protein | pB3 | CDS | 53811 | 237 | - | 0.624473 | |
kleB | KleB protein | pB3 | CDS | 53537 | 216 | - | 0.62963 | |
kleE | KleE protein | pB3 | CDS | 53063 | 387 | - | 0.630491 | |
kleF | KleF protein | pB3 | CDS | 52531 | 531 | - | 0.691149 | |
korA | transcriptional repressor KorA | pB3 | CDS | 52115 | 303 | - | 0.630363 | |
korB | KorB DNA binding protein | pB3 | CDS | 50308 | 1050 | - | 0.671429 | |
nps-1 | beta-lactamase LCR-1 precursor | pB3 | CDS | 19208 | 783 | + | 0.514687 | |
parA | plasmid stablization protein ParA, resolvase | pB3 | CDS | 18099 | 660 | - | 0.684848 | |
qacEdelta1 | qacEdelta1 | quaternary ammonium-compound resistance protein | pB3 | CDS | 30126 | 348 | + | 0.5 |
ssb | single strand DNA binding protein | pB3 | CDS | 2760 | 342 | - | 0.593567 | |
sul1 | Sul1 dihydropteroate synthase | pB3 | CDS | 30467 | 840 | + | 0.616667 | |
tetA(C) | tetracycline efflux protein (class C) | pB3 | CDS | 23147 | 1191 | - | 0.61461 | |
tetR | tetracyclin repressor protein | pB3 | CDS | 24430 | 660 | + | 0.590909 | |
tniC | putative TniC resolvase | pB3 | CDS | 20085 | 624 | - | 0.629808 | |
tnpA | IS6100 transposase | pB3 | CDS | 32411 | 795 | + | 0.610063 | |
tnpA (IS26) | TnpA transposase | pB3 | CDS | 21357 | 705 | + | 0.531915 | |
tnpA (IS26, second copy) | TnpA transposase | pB3 | CDS | 25922 | 705 | + | 0.531915 | |
traC | TraC primase | pB3 | CDS | 33827 | 4347 | - | 0.68438 | |
traD | TraD protein | pB3 | CDS | 38177 | 390 | - | 0.723077 | |
traE | DNA topoisomerase | pB3 | CDS | 38588 | 2064 | - | 0.67345 | |
traF | TraF maturation peptidase | pB3 | mat_peptide | 40667 | 452 | - | 0.654867 | |
traF | TraF maturation peptidase precursor | pB3 | CDS | 40664 | 537 | - | 0.662942 | |
traF | pB3 | sig_peptide | 41117 | 84 | - | 0.72619 | ||
traG | DNA transport protein | pB3 | mat_peptide | 41200 | 1797 | - | 0.664997 | |
traG | pB3 | sig_peptide | 42997 | 114 | - | 0.657895 | ||
traG | DNA transport protein precursor | pB3 | CDS | 41197 | 1914 | - | 0.664054 | |
traH | TraH protein | pB3 | CDS | 43409 | 393 | - | 0.671756 | |
traI | TraI DNA-relaxase | pB3 | CDS | 43107 | 2241 | - | 0.66622 | |
traJ | oriT binding protein TraJ | pB3 | CDS | 45382 | 375 | - | 0.669333 | |
traK | oriT binding protein TraK | pB3 | CDS | 46131 | 399 | + | 0.629073 | |
traL | TraL origin of transfer (oriT) protein | pB3 | CDS | 46529 | 726 | + | 0.625344 | |
traM | TraM protein | pB3 | CDS | 47254 | 441 | + | 0.671202 | |
traN | TraN protein | pB3 | CDS | 47897 | 660 | - | 0.687879 | |
traO | TraO protein | pB3 | CDS | 48579 | 348 | - | 0.58908 | |
trbA | TrbA regulator protein | pB3 | CDS | 3215 | 363 | + | 0.586777 | |
trbB | TrbB secretion system protein | pB3 | CDS | 3885 | 966 | + | 0.595238 | |
trbC | TrbC conjugal transfer protein precursor | pB3 | CDS | 4864 | 465 | + | 0.655914 | |
trbC | pB3 | sig_peptide | 4864 | 108 | + | 0.62963 | ||
trbC | TrbC conjugal transfer protein | pB3 | mat_peptide | 4972 | 354 | + | 0.669492 | |
trbD | TrbD conjugal transfer protein | pB3 | CDS | 5332 | 312 | + | 0.634615 | |
trbE | pB3 | sig_peptide | 5640 | 78 | + | 0.551282 | ||
trbE | TrbE conjugal transfer protein | pB3 | mat_peptide | 5718 | 2478 | + | 0.642857 | |
trbE | TrbE conjugal transfer protein precursor | pB3 | CDS | 5640 | 2559 | + | 0.639703 | |
trbF | TrbF conjugal transfer protein | pB3 | CDS | 8195 | 783 | + | 0.660281 | |
trbG | pB3 | sig_peptide | 8995 | 66 | + | 0.636364 | ||
trbG | TrbG conjugal transfer protein precursor | pB3 | CDS | 8995 | 900 | + | 0.638889 | |
trbG | TrbG conjugal transfer protein | pB3 | mat_peptide | 9060 | 832 | + | 0.640625 | |
trbH | pB3 | sig_peptide | 9891 | 99 | + | 0.686869 | ||
trbH | TrbH conjugal transfer protein precursor | pB3 | CDS | 9891 | 495 | + | 0.709091 | |
trbH | TrbH conjugal transfer protein | pB3 | mat_peptide | 9990 | 393 | + | 0.717557 | |
trbI | TrbI conjugal transfer protein | pB3 | CDS | 10390 | 1422 | + | 0.677215 | |
trbJ | TrbJ conjugal transfer/entry exclusion protein precursor | pB3 | CDS | 11832 | 765 | + | 0.606536 | |
trbJ | pB3 | sig_peptide | 11832 | 81 | + | 0.54321 | ||
trbJ | TrbJ conjugal transfer/entry exclusion protein | pB3 | mat_peptide | 11913 | 681 | + | 0.61674 | |
trbK | pB3 | sig_peptide | 12606 | 87 | + | 0.666667 | ||
trbK | TrbK entry exclusion protein precursor | pB3 | CDS | 12606 | 228 | + | 0.627193 | |
trbK | TrbK entry exclusion protein | pB3 | mat_peptide | 12693 | 138 | + | 0.608696 | |
trbL | TrbL plasmid conjugal transfer protein | pB3 | mat_peptide | 12925 | 1647 | + | 0.686096 | |
trbL | pB3 | sig_peptide | 12844 | 81 | + | 0.580247 | ||
trbL | TrbL plasmid conjugal transfer protein precursor | pB3 | CDS | 12844 | 1731 | + | 0.679954 | |
trbM | pB3 | sig_peptide | 14592 | 72 | + | 0.666667 | ||
trbM | pB3_15 | TrbM conjugal transfer protein precursor | pB3 | CDS | 14592 | 588 | + | 0.668367 |
trbM | TrbM conjugal transfer protein | pB3 | mat_peptide | 14664 | 513 | + | 0.670565 | |
trbN | TrbN, putative muramidase | pB3 | CDS | 15193 | 636 | + | 0.690252 | |
trbO | TrbO conjugal transfer protein | pB3 | CDS | 15857 | 267 | + | 0.640449 | |
trbP | TrbP conjugal transfer protein | pB3 | CDS | 16123 | 699 | + | 0.680973 | |
trfA | replication initiation protein | pB3 | CDS | 1492 | 1221 | - | 0.66421 | |
upf30.5 | putative outer membrane protein precursor | pB3 | CDS | 16837 | 432 | + | 0.675926 | |
upf30.5 | putative outer membrane protein | pB3 | mat_peptide | 16903 | 363 | + | 0.688705 | |
upf30.5 | pB3 | sig_peptide | 16837 | 66 | + | 0.621212 | ||
upf31.0 | putative site-specific DNA-methyltransferase | pB3 | CDS | 17423 | 675 | + | 0.657778 |