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2024-05-25 09:50:12

Gene list

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Genomic element: megaplasmid

Number of genes found: 148

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Shewanella oneidensis MR-1, MR-1
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
SOA0001 replication protein RepASubName: Full=Plasmid replication initiation protein RepA; megaplasmid CDS608 882 + 0.461451
SOA0002 type II restriction-modification system activator, putativeSubName: Full=Type II restriction-modification system activator; megaplasmid CDS2651 228 + 0.377193
SOA0003 type II restriction endonuclease, putativeSubName: Full=Type II restriction-modication system restriction endonuclease; megaplasmid CDS2887 1047 + 0.338109
SOA0004 type II DNA modification methyltransferase megaplasmid CDS3938 1713 - 0.332166
SOA0005 hypothetical proteinSubName: Full=Uncharacterized protein; megaplasmid CDS5714 306 - 0.473856
SOA0006 ParA family protein megaplasmid CDS6037 840 - 0.459524
SOA0007 hypothetical protein megaplasmid CDS7065 786 + 0.533079
SOA0008 hypothetical proteinSubName: Full=Conserved hypothetical periplasmic protein; megaplasmid CDS7840 720 + 0.486111
SOA0009 hypothetical protein megaplasmid CDS8534 285 + 0.4
SOA0010 conserved hypothetical proteinSubName: Full=Membrane-bound metal-dependent hydrolase; megaplasmid CDS8805 519 + 0.468208
SOA0011 conserved hypothetical proteinSubName: Full=Uncharacterized protein; megaplasmid CDS9465 243 + 0.395062
SOA0014 hypothetical protein megaplasmid CDS12332 96 + 0.583333
SOA0015 hypothetical protein megaplasmid CDS12732 147 - 0.591837
SOA0016 ISSod9, transposaseSubName: Full=ISSod9 transposase TnpA_ISSod9; megaplasmid CDS12945 2967 - 0.557465
SOA0017 ISSo9, nucleotidyltransferase domain proteinSubName: Full=ISSod9 nucleotidyltransferase domain protein; SubName: Full=ISSod9 toxin-antitoxin system antidote Mnt family; megaplasmid CDS16075 291 + 0.505155
SOA0018 ISSod9, conserved hypothetical proteinSubName: Full=ISSod9 toxin-antitoxin system toxin HepN family; SubName: Full=Uncharacterized protein; megaplasmid CDS16362 378 + 0.428571
SOA0019 ISSod9, DNA-invertaseSubName: Full=ISSod9 resolvase TnpR_ISSod9; megaplasmid CDS16733 558 + 0.514337
SOA0024 ISSod1, transposase OrfB megaplasmid CDS19523 810 - 0.45679
SOA0025 ISSod1, transposase OrfA megaplasmid CDS20392 291 - 0.436426
SOA0026 site-specific recombinase, resolvase family megaplasmid CDS20759 309 - 0.449838
SOA0028 ISSod1, transposase OrfA megaplasmid CDS21138 291 + 0.439863
SOA0029 ISSod1, transposase OrfB megaplasmid CDS21488 810 + 0.45679
SOA0030 hypothetical protein megaplasmid CDS22368 123 - 0.552846
SOA0031 partition protein, ParB family, putativeSubName: Full=ParB-like partition protein; megaplasmid CDS22779 1875 + 0.4832
SOA0032 conserved hypothetical proteinSubName: Full=Uncharacterized protein; megaplasmid CDS24778 456 + 0.449561
SOA0033 hypothetical proteinSubName: Full=Uncharacterized protein; megaplasmid CDS25235 489 + 0.488753
SOA0034 hypothetical proteinSubName: Full=Uncharacterized protein; megaplasmid CDS25754 222 + 0.436937
SOA0035 ISSod4, transposaseSubName: Full=ISSod4 transposase TnpA_ISSod4; megaplasmid CDS26127 1203 - 0.428096
SOA0036 HicB-related protein megaplasmid CDS27784 213 + 0.446009
SOA0037 ISSod1, transposase OrfB megaplasmid CDS28346 810 - 0.45679
SOA0038 ISSod1, transposase OrfA megaplasmid CDS29215 291 - 0.439863
SOA0039 conserved domain protein megaplasmid CDS29547 1122 + 0.438503
SOA0040 hypothetical proteinSubName: Full=Antitoxin module of toxin-antitoxin system PemI; megaplasmid CDS30832 252 + 0.384921
SOA0041 transcriptional regulator, PemK familyRecName: Full=mRNA interferase; EC=3.1.-.-; megaplasmid CDS31077 318 + 0.380503
SOA0042 hypothetical proteinSubName: Full=Uncharacterized protein; megaplasmid CDS31539 489 + 0.333333
SOA0043 hypothetical proteinSubName: Full=Uncharacterized protein; megaplasmid CDS32113 147 - 0.469388
SOA0044 site-specific recombinase, phage integrase familySubName: Full=Site-specific recombinase phage integrase family; megaplasmid CDS32496 1131 + 0.471264
SOA0045 site-specific recombinase, phage integrase family megaplasmid CDS33728 1266 + 0.462085
SOA0046 hypothetical protein megaplasmid CDS35135 102 - 0.372549
SOA0047 hypothetical protein megaplasmid CDS35430 360 - 0.294444
SOA0048 prolyl oligopeptidase family proteinSubName: Full=Periplasmic prolyl oligopeptidase family protein; megaplasmid CDS35916 1929 - 0.378953
SOA0049 toxin secretion ABC transporter, ATP-binding subunit/permease protein, putativeSubName: Full=ABC-type bacteriocin export system multifunctional permease/ATPase/protease component; megaplasmid CDS38936 2178 - 0.443067
SOA0050 toxin secretion, membrane fusion proteinSubName: Full=ABC-type bacteriocin export system MFP component; megaplasmid CDS41113 1248 - 0.394231
SOA0051 hypothetical proteinSubName: Full=Uncharacterized protein; megaplasmid CDS43722 369 + 0.368564
SOA0052 hypothetical protein megaplasmid CDS44152 861 - 0.371661
SOA0053 ISSod1, transposase OrfA megaplasmid CDS45061 291 + 0.439863
SOA0054 ISSod1, transposase OrfB megaplasmid CDS45411 810 + 0.45679
SOA0055 hypothetical protein megaplasmid CDS46217 318 + 0.358491
SOA0056 hypothetical proteinSubName: Full=Plasmid protein; megaplasmid CDS46611 183 + 0.349727
SOA0057 hypothetical proteinSubName: Full=Uncharacterized protein; megaplasmid CDS46822 228 + 0.399123
SOA0058 hypothetical protein megaplasmid CDS47223 765 + 0.445752
SOA0059 conserved hypothetical proteinSubName: Full=Toxin-antitoxin system antidote Rhh family; megaplasmid CDS48737 291 + 0.436426
SOA0060 acetyltransferase, GNAT familySubName: Full=Toxin-antitoxin system toxin GNAT family; megaplasmid CDS49031 528 + 0.409091
SOA0061 parA protein, putativeSubName: Full=Plasmid stability/partitioning determinant RepA; megaplasmid CDS49745 687 + 0.427948
SOA0062 hypothetical proteinSubName: Full=Putative plasmid stability/partitioning determinant RepB; megaplasmid CDS50424 360 + 0.405556
SOA0063 ISSod8, transposaseSubName: Full=ISSod8 transposase TnpA_ISSod8; megaplasmid CDS50928 558 + 0.415771
SOA0065 ISSod1, transposase OrfA megaplasmid CDS52829 291 + 0.436426
SOA0066 ISSod1, transposase OrfB megaplasmid CDS53179 810 + 0.45679
SOA0067 hypothetical proteinSubName: Full=Uncharacterized protein; megaplasmid CDS54504 879 - 0.414107
SOA0068 conserved hypothetical proteinSubName: Full=Toxin-antitoxin system antidote transcriptional repressor Xre family; megaplasmid CDS55521 288 - 0.458333
SOA0069 conserved hypothetical proteinSubName: Full=Toxin-antitoxin system toxin component RelE family; megaplasmid CDS55805 336 - 0.419643
SOA0070 hypothetical proteinSubName: Full=Uncharacterized protein; megaplasmid CDS56571 705 - 0.507801
SOA0071 conserved hypothetical protein megaplasmid CDS57546 423 - 0.416076
SOA0072 conserved hypothetical proteinSubName: Full=Toxin-antitoxin system toxin RelE family; megaplasmid CDS57968 312 - 0.413462
SOA0074 ISSod6, transposaseSubName: Full=ISSod6 transposase TnpA_ISSod6; megaplasmid CDS58734 759 - 0.433465
SOA0075 hypothetical protein megaplasmid CDS59527 354 - 0.305085
SOA0076 conserved domain proteinSubName: Full=Uncharacterized protein; megaplasmid CDS59873 285 - 0.382456
SOA0077 site-specific recombinase, resolvase familySubName: Full=Recombinase resolvase family; megaplasmid CDS60346 636 - 0.443396
SOA0078 conserved hypothetical proteinSubName: Full=Type II toxin-antitoxin system antidote component CC2985 family; megaplasmid CDS61181 243 + 0.432099
SOA0079 conserved hypothetical proteinSubName: Full=Type II toxin-antitoxin system toxin component RelE family; megaplasmid CDS61416 300 + 0.396667
SOA0080 hypothetical protein megaplasmid CDS62110 498 - 0.38755
SOA0083 ISSod4, transposaseSubName: Full=ISSod4 transposase TnpA_ISSod4; megaplasmid CDS63339 1203 + 0.432253
SOA0085 ISSod8, transposaseSubName: Full=ISSod8 transposase TnpA_ISSod8; megaplasmid CDS65906 546 - 0.415751
SOA0086 site-specific recombinase, resolvase familySubName: Full=ISSpu16 resolvase TnpR_ISSpu16; megaplasmid CDS66535 591 - 0.43824
SOA0087 conserved hypothetical proteinSubName: Full=ISSpu16 toxin-antitoxin system antidote Phd family; megaplasmid CDS67295 261 + 0.409962
SOA0088 plasmid stabilization protein ParE, putativeSubName: Full=ISSpu16 toxin-antitoxin system toxin RelE family; megaplasmid CDS67555 312 + 0.429487
SOA0090 ISSod1, transposase OrfA megaplasmid CDS69314 291 + 0.436426
SOA0091 ISSod1, transposase OrfB megaplasmid CDS69664 810 + 0.45679
SOA0094 hypothetical protein megaplasmid CDS73136 108 - 0.361111
SOA0095 partitioning protein ASubName: Full=Plasmid partition protein ParA; megaplasmid CDS73412 1200 + 0.380833
SOA0096 partitioning protein BSubName: Full=Plasmid partition protein ParB; megaplasmid CDS74611 1095 + 0.383562
SOA0097 ISSod6, transposaseSubName: Full=ISSod6 transposase TnpA_ISSod6; megaplasmid CDS75737 759 - 0.429513
SOA0098 conserved hypothetical proteinSubName: Full=Volatage-gated potassium channel protein; megaplasmid CDS77039 396 + 0.290404
SOA0099 conserved hypothetical proteinSubName: Full=Periplasmic amidohydrolase family protein; megaplasmid CDS77713 1734 + 0.451557
SOA0100 conserved hypothetical proteinSubName: Full=Periplasmic metal-dependent aminohydrolase family protein; megaplasmid CDS79656 1815 - 0.449587
SOA0102 ISSod3, transposase megaplasmid CDS82906 1209 + 0.468983
SOA0104 hypothetical protein megaplasmid CDS84252 126 - 0.412698
SOA0105 ISSod8, transposaseSubName: Full=ISSod8 transposase TnpA_ISSod8; megaplasmid CDS84452 558 + 0.417563
SOA0106 methyl-accepting chemotaxis proteinSubName: Full=Methyl-accepting chemotaxis protein; megaplasmid CDS85324 1641 + 0.427179
SOA0107 hypothetical protein megaplasmid CDS87063 339 + 0.306785
SOA0108 hypothetical proteinSubName: Full=Radical SAM superfamily protein; megaplasmid CDS88762 387 + 0.335917
SOA0109 hypothetical proteinSubName: Full=EAL domain protein; megaplasmid CDS89170 732 + 0.275956
SOA0110 lipoprotein, putativeSubName: Full=Putative surface lipoprotein; megaplasmid CDS90085 4227 + 0.49586
SOA0112 lipoprotein, putativeSubName: Full=Putative surface lipoprotein; megaplasmid CDS94602 4233 + 0.498937
SOA0115 lipoprotein, putativeSubName: Full=Putative surface lipoprotein; megaplasmid CDS100525 4233 + 0.498937
SOA0117 hypothetical protein megaplasmid CDS105296 243 + 0.432099
SOA0118 conserved domain protein megaplasmid CDS105531 564 + 0.482269
SOA0119 ISSod13, transposaseSubName: Full=ISSod13 transposase TnpA_ISSod13; megaplasmid CDS106554 1041 + 0.474544
SOA0120 ISSod12, transposaseSubName: Full=ISSod12 transposase TnpA_ISSod12; megaplasmid CDS107889 924 - 0.469697
SOA0121 hypothetical protein megaplasmid CDS108788 126 + 0.420635
SOA0122 conserved hypothetical proteinSubName: Full=Plasmid-encoded periplasmic BOF domain protein YgiW; megaplasmid CDS109108 390 + 0.374359
SOA0123 conserved domain protein megaplasmid CDS109721 210 - 0.404762
SOA0127 hypothetical protein megaplasmid CDS112911 129 - 0.565891
SOA0129 transposase, IS3 family megaplasmid CDS113440 840 + 0.465476
SOA0130 ISSod4, transposaseSubName: Full=ISSod4 transposase TnpA_ISSod4; megaplasmid CDS114492 1203 - 0.429759
SOA0131 hypothetical protein megaplasmid CDS116108 426 - 0.286385
SOA0132 conserved hypothetical proteinSubName: Full=Transcriptional regulator Winged helix family; megaplasmid CDS116515 459 - 0.285403
SOA0135 hypothetical protein megaplasmid CDS118907 1704 + 0.47946
SOA0136 ISSod3, transposase megaplasmid CDS120598 1209 - 0.468983
SOA0137 conserved domain protein megaplasmid CDS122077 255 + 0.403922
SOA0138 hypothetical protein megaplasmid CDS122753 2205 + 0.463946
SOA0139 hypothetical protein megaplasmid CDS125695 492 + 0.430894
SOA0140 hypothetical proteinSubName: Full=Putative lipoprotein; megaplasmid CDS126416 2331 + 0.434148
SOA0141 hypothetical proteinSubName: Full=Outer membrane morn variant repeat-containing protein; megaplasmid CDS128755 1731 + 0.418255
SOA0142 ISSod13, transposaseSubName: Full=ISSod13 transposase TnpA_ISSod13; megaplasmid CDS130884 1041 + 0.474544
SOA0144 ISSod4, transposaseSubName: Full=ISSod4 transposase TnpA_ISSod4; megaplasmid CDS132330 1203 + 0.432253
SOA0145 ISSod1, transposase OrfB megaplasmid CDS133536 645 - 0.477519
SOA0146 ISSod1, transposase OrfA megaplasmid CDS134240 291 - 0.439863
SOA0147 hypothetical proteinSubName: Full=Uncharacterized protein; megaplasmid CDS135339 138 + 0.376812
SOA0148 hypothetical protein megaplasmid CDS135887 111 - 0.378378
SOA0149 conserved hypothetical protein megaplasmid CDS136564 849 + 0.372203
SOA0150 hypothetical protein megaplasmid CDS137558 666 + 0.48048
SOA0151 ISSod13, transposaseSubName: Full=ISSod13 transposase TnpA_ISSod13; megaplasmid CDS138290 1041 - 0.474544
SOA0152 hypothetical proteinSubName: Full=Toxin-antitoxin system toxin RelE family; megaplasmid CDS140089 180 - 0.361111
SOA0153 heavy metal efflux pump, CzcA familySubName: Full=Copper/silver efflux pump permease component CusA; megaplasmid CDS140488 3138 - 0.504143
SOA0154 heavy metal efflux protein, putative megaplasmid CDS143635 1551 - 0.489362
SOA0155 conserved domain proteinSubName: Full=Copper efflux pump periplasmic metallochaperone CusF; megaplasmid CDS145198 261 - 0.501916
SOA0156 hypothetical protein megaplasmid CDS145735 474 - 0.474684
SOA0157 hypothetical proteinSubName: Full=Uncharacterized protein; megaplasmid CDS146282 456 - 0.432018
SOA0158 hypothetical protein megaplasmid CDS146804 321 - 0.470405
SOA0159 multidrug efflux transporterSubName: Full=Multidrug efflux transporter DMT superfamily; megaplasmid CDS147492 327 - 0.489297
SOA0160 esterase, putativeSubName: Full=S-formylglutathione hydrolase FrmB; EC=3.1.2.12; megaplasmid CDS148058 840 - 0.489286
SOA0161 zinc-binding dehydrogenaseSubName: Full=S-(Hydroxymethyl)glutathione dehydrogenase FrmA; EC=1.1.1.284; megaplasmid CDS148985 1131 - 0.47038
SOA0162 ISSod6, transposaseSubName: Full=ISSod6 transposase TnpA_ISSod6; megaplasmid CDS150372 759 - 0.428195
SOA0164 iron-containing alcohol dehydrogenaseSubName: Full=Alcohol dehydrogenase II AdhB; EC=1.1.1.1; megaplasmid CDS152606 1152 - 0.453993
SOA0165 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator LysR family; megaplasmid CDS154093 870 + 0.457471
SOA0167 ISSod9, transposaseSubName: Full=ISSod9 transposase TnpA_ISSod9; megaplasmid CDS155302 2967 - 0.557465
SOA0168 ISSo9, nucleotidyltransferase domain proteinSubName: Full=ISSod9 nucleotidyltransferase domain protein; SubName: Full=ISSod9 toxin-antitoxin system antidote Mnt family; megaplasmid CDS158432 291 + 0.505155
SOA0169 ISSod9, conserved hypothetical proteinSubName: Full=ISSod9 toxin-antitoxin system toxin HepN family; SubName: Full=Uncharacterized protein; megaplasmid CDS158719 378 + 0.428571
SOA0170 ISSod9, DNA-invertaseSubName: Full=ISSod9 resolvase TnpR_ISSod9; megaplasmid CDS159090 558 + 0.514337
SOA0171 hypothetical proteinSubName: Full=Uncharacterized protein; megaplasmid CDS159920 258 + 0.306202
SOA0172 site-specific recombinase, resolvase familySubName: Full=Site-specific recombinase resolvase family; megaplasmid CDS160178 627 - 0.45614
SOA0173 hypothetical proteinSubName: Full=Uncharacterized protein; megaplasmid CDS160979 267 - 0.41573
higA proteic killer suppressor proteinSubName: Full=Toxin-antitoxin system antidote component HigA family; megaplasmid CDS19154 300 + 0.41
higB proteic killer active proteinSubName: Full=Toxin-antitoxin system toxin component RelE family; megaplasmid CDS18774 306 + 0.336601
ompA outer membrane protein ASubName: Full=Outer membrane protein OmpA family; megaplasmid CDS99408 1029 + 0.467444
umuC umuC proteinSubName: Full=DNA polymerase V subunit UmuC; megaplasmid CDS10078 1257 - 0.488465
umuD umuD proteinSubName: Full=DNA polymerase V subunit UmuD; EC=3.4.21.-; megaplasmid CDS11335 405 - 0.471605