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2024-05-05 17:09:33

Gene list

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Genomic element: megaplasmid

Number of genes found: 148

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Shewanella oneidensis MR-1, MR-1
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
SOA0001 replication protein RepAmegaplasmid CDS608 882 + 0.461451
SOA0002 type II restriction-modification system activator, putativemegaplasmid CDS2651 228 + 0.377193
SOA0003 type II restriction endonuclease, putativemegaplasmid CDS2887 1047 + 0.338109
SOA0004 type II DNA modification methyltransferasemegaplasmid CDS3938 1713 - 0.332166
SOA0005 hypothetical proteinmegaplasmid CDS5714 306 - 0.473856
SOA0006 ParA family proteinmegaplasmid CDS6037 840 - 0.459524
SOA0007 hypothetical proteinmegaplasmid CDS7065 786 + 0.533079
SOA0008 hypothetical proteinmegaplasmid CDS7840 720 + 0.486111
SOA0009 hypothetical proteinmegaplasmid CDS8534 285 + 0.4
SOA0010 conserved hypothetical proteinmegaplasmid CDS8805 519 + 0.468208
SOA0011 conserved hypothetical proteinmegaplasmid CDS9465 243 + 0.395062
SOA0014 hypothetical proteinmegaplasmid CDS12332 96 + 0.583333
SOA0015 hypothetical proteinmegaplasmid CDS12732 147 - 0.591837
SOA0016 ISSod9, transposasemegaplasmid CDS12945 2967 - 0.557465
SOA0017 ISSo9, nucleotidyltransferase domain proteinmegaplasmid CDS16075 291 + 0.505155
SOA0018 ISSod9, conserved hypothetical proteinmegaplasmid CDS16362 378 + 0.428571
SOA0019 ISSod9, DNA-invertasemegaplasmid CDS16733 558 + 0.514337
SOA0024 ISSod1, transposase OrfBmegaplasmid CDS19523 810 - 0.45679
SOA0025 ISSod1, transposase OrfAmegaplasmid CDS20392 291 - 0.436426
SOA0026 site-specific recombinase, resolvase familymegaplasmid CDS20759 309 - 0.449838
SOA0028 ISSod1, transposase OrfAmegaplasmid CDS21138 291 + 0.439863
SOA0029 ISSod1, transposase OrfBmegaplasmid CDS21488 810 + 0.45679
SOA0030 hypothetical proteinmegaplasmid CDS22368 123 - 0.552846
SOA0031 partition protein, ParB family, putativemegaplasmid CDS22779 1875 + 0.4832
SOA0032 conserved hypothetical proteinmegaplasmid CDS24778 456 + 0.449561
SOA0033 hypothetical proteinmegaplasmid CDS25235 489 + 0.488753
SOA0034 hypothetical proteinmegaplasmid CDS25754 222 + 0.436937
SOA0035 ISSod4, transposasemegaplasmid CDS26127 1203 - 0.428096
SOA0036 HicB-related proteinmegaplasmid CDS27784 213 + 0.446009
SOA0037 ISSod1, transposase OrfBmegaplasmid CDS28346 810 - 0.45679
SOA0038 ISSod1, transposase OrfAmegaplasmid CDS29215 291 - 0.439863
SOA0039 conserved domain proteinmegaplasmid CDS29547 1122 + 0.438503
SOA0040 hypothetical proteinmegaplasmid CDS30832 252 + 0.384921
SOA0041 transcriptional regulator, PemK familymegaplasmid CDS31077 318 + 0.380503
SOA0042 hypothetical proteinmegaplasmid CDS31539 489 + 0.333333
SOA0043 hypothetical proteinmegaplasmid CDS32113 147 - 0.469388
SOA0044 site-specific recombinase, phage integrase familymegaplasmid CDS32496 1131 + 0.471264
SOA0045 site-specific recombinase, phage integrase familymegaplasmid CDS33728 1266 + 0.462085
SOA0046 hypothetical proteinmegaplasmid CDS35135 102 - 0.372549
SOA0047 hypothetical proteinmegaplasmid CDS35430 360 - 0.294444
SOA0048 prolyl oligopeptidase family proteinmegaplasmid CDS35916 1929 - 0.378953
SOA0049 toxin secretion ABC transporter, ATP-binding subunit/permease protein, putativemegaplasmid CDS38936 2178 - 0.443067
SOA0050 toxin secretion, membrane fusion proteinmegaplasmid CDS41113 1248 - 0.394231
SOA0051 hypothetical proteinmegaplasmid CDS43722 369 + 0.368564
SOA0052 hypothetical proteinmegaplasmid CDS44152 861 - 0.371661
SOA0053 ISSod1, transposase OrfAmegaplasmid CDS45061 291 + 0.439863
SOA0054 ISSod1, transposase OrfBmegaplasmid CDS45411 810 + 0.45679
SOA0055 hypothetical proteinmegaplasmid CDS46217 318 + 0.358491
SOA0056 hypothetical proteinmegaplasmid CDS46611 183 + 0.349727
SOA0057 hypothetical proteinmegaplasmid CDS46822 228 + 0.399123
SOA0058 hypothetical proteinmegaplasmid CDS47223 765 + 0.445752
SOA0059 conserved hypothetical proteinmegaplasmid CDS48737 291 + 0.436426
SOA0060 acetyltransferase, GNAT familymegaplasmid CDS49031 528 + 0.409091
SOA0061 parA protein, putativemegaplasmid CDS49745 687 + 0.427948
SOA0062 hypothetical proteinmegaplasmid CDS50424 360 + 0.405556
SOA0063 ISSod8, transposasemegaplasmid CDS50928 558 + 0.415771
SOA0065 ISSod1, transposase OrfAmegaplasmid CDS52829 291 + 0.436426
SOA0066 ISSod1, transposase OrfBmegaplasmid CDS53179 810 + 0.45679
SOA0067 hypothetical proteinmegaplasmid CDS54504 879 - 0.414107
SOA0068 conserved hypothetical proteinmegaplasmid CDS55521 288 - 0.458333
SOA0069 conserved hypothetical proteinmegaplasmid CDS55805 336 - 0.419643
SOA0070 hypothetical proteinmegaplasmid CDS56571 705 - 0.507801
SOA0071 conserved hypothetical proteinmegaplasmid CDS57546 423 - 0.416076
SOA0072 conserved hypothetical proteinmegaplasmid CDS57968 312 - 0.413462
SOA0074 ISSod6, transposasemegaplasmid CDS58734 759 - 0.433465
SOA0075 hypothetical proteinmegaplasmid CDS59527 354 - 0.305085
SOA0076 conserved domain proteinmegaplasmid CDS59873 285 - 0.382456
SOA0077 site-specific recombinase, resolvase familymegaplasmid CDS60346 636 - 0.443396
SOA0078 conserved hypothetical proteinmegaplasmid CDS61181 243 + 0.432099
SOA0079 conserved hypothetical proteinmegaplasmid CDS61416 300 + 0.396667
SOA0080 hypothetical proteinmegaplasmid CDS62110 498 - 0.38755
SOA0083 ISSod4, transposasemegaplasmid CDS63339 1203 + 0.432253
SOA0085 ISSod8, transposasemegaplasmid CDS65906 546 - 0.415751
SOA0086 site-specific recombinase, resolvase familymegaplasmid CDS66535 591 - 0.43824
SOA0087 conserved hypothetical proteinmegaplasmid CDS67295 261 + 0.409962
SOA0088 plasmid stabilization protein ParE, putativemegaplasmid CDS67555 312 + 0.429487
SOA0090 ISSod1, transposase OrfAmegaplasmid CDS69314 291 + 0.436426
SOA0091 ISSod1, transposase OrfBmegaplasmid CDS69664 810 + 0.45679
SOA0094 hypothetical proteinmegaplasmid CDS73136 108 - 0.361111
SOA0095 partitioning protein Amegaplasmid CDS73412 1200 + 0.380833
SOA0096 partitioning protein Bmegaplasmid CDS74611 1095 + 0.383562
SOA0097 ISSod6, transposasemegaplasmid CDS75737 759 - 0.429513
SOA0098 conserved hypothetical proteinmegaplasmid CDS77039 396 + 0.290404
SOA0099 conserved hypothetical proteinmegaplasmid CDS77713 1734 + 0.451557
SOA0100 conserved hypothetical proteinmegaplasmid CDS79656 1815 - 0.449587
SOA0102 ISSod3, transposasemegaplasmid CDS82906 1209 + 0.468983
SOA0104 hypothetical proteinmegaplasmid CDS84252 126 - 0.412698
SOA0105 ISSod8, transposasemegaplasmid CDS84452 558 + 0.417563
SOA0106 methyl-accepting chemotaxis proteinmegaplasmid CDS85324 1641 + 0.427179
SOA0107 hypothetical proteinmegaplasmid CDS87063 339 + 0.306785
SOA0108 hypothetical proteinmegaplasmid CDS88762 387 + 0.335917
SOA0109 hypothetical proteinmegaplasmid CDS89170 732 + 0.275956
SOA0110 lipoprotein, putativemegaplasmid CDS90085 4227 + 0.49586
SOA0112 lipoprotein, putativemegaplasmid CDS94602 4233 + 0.498937
SOA0115 lipoprotein, putativemegaplasmid CDS100525 4233 + 0.498937
SOA0117 hypothetical proteinmegaplasmid CDS105296 243 + 0.432099
SOA0118 conserved domain proteinmegaplasmid CDS105531 564 + 0.482269
SOA0119 ISSod13, transposasemegaplasmid CDS106554 1041 + 0.474544
SOA0120 ISSod12, transposasemegaplasmid CDS107889 924 - 0.469697
SOA0121 hypothetical proteinmegaplasmid CDS108788 126 + 0.420635
SOA0122 conserved hypothetical proteinmegaplasmid CDS109108 390 + 0.374359
SOA0123 conserved domain proteinmegaplasmid CDS109721 210 - 0.404762
SOA0127 hypothetical proteinmegaplasmid CDS112911 129 - 0.565891
SOA0129 transposase, IS3 familymegaplasmid CDS113440 840 + 0.465476
SOA0130 ISSod4, transposasemegaplasmid CDS114492 1203 - 0.429759
SOA0131 hypothetical proteinmegaplasmid CDS116108 426 - 0.286385
SOA0132 conserved hypothetical proteinmegaplasmid CDS116515 459 - 0.285403
SOA0135 hypothetical proteinmegaplasmid CDS118907 1704 + 0.47946
SOA0136 ISSod3, transposasemegaplasmid CDS120598 1209 - 0.468983
SOA0137 conserved domain proteinmegaplasmid CDS122077 255 + 0.403922
SOA0138 hypothetical proteinmegaplasmid CDS122753 2205 + 0.463946
SOA0139 hypothetical proteinmegaplasmid CDS125695 492 + 0.430894
SOA0140 hypothetical proteinmegaplasmid CDS126416 2331 + 0.434148
SOA0141 hypothetical proteinmegaplasmid CDS128755 1731 + 0.418255
SOA0142 ISSod13, transposasemegaplasmid CDS130884 1041 + 0.474544
SOA0144 ISSod4, transposasemegaplasmid CDS132330 1203 + 0.432253
SOA0145 ISSod1, transposase OrfBmegaplasmid CDS133536 645 - 0.477519
SOA0146 ISSod1, transposase OrfAmegaplasmid CDS134240 291 - 0.439863
SOA0147 hypothetical proteinmegaplasmid CDS135339 138 + 0.376812
SOA0148 hypothetical proteinmegaplasmid CDS135887 111 - 0.378378
SOA0149 conserved hypothetical proteinmegaplasmid CDS136564 849 + 0.372203
SOA0150 hypothetical proteinmegaplasmid CDS137558 666 + 0.48048
SOA0151 ISSod13, transposasemegaplasmid CDS138290 1041 - 0.474544
SOA0152 hypothetical proteinmegaplasmid CDS140089 180 - 0.361111
SOA0153 heavy metal efflux pump, CzcA familymegaplasmid CDS140488 3138 - 0.504143
SOA0154 heavy metal efflux protein, putativemegaplasmid CDS143635 1551 - 0.489362
SOA0155 conserved domain proteinmegaplasmid CDS145198 261 - 0.501916
SOA0156 hypothetical proteinmegaplasmid CDS145735 474 - 0.474684
SOA0157 hypothetical proteinmegaplasmid CDS146282 456 - 0.432018
SOA0158 hypothetical proteinmegaplasmid CDS146804 321 - 0.470405
SOA0159 multidrug efflux transportermegaplasmid CDS147492 327 - 0.489297
SOA0160 esterase, putativemegaplasmid CDS148058 840 - 0.489286
SOA0161 zinc-binding dehydrogenasemegaplasmid CDS148985 1131 - 0.47038
SOA0162 ISSod6, transposasemegaplasmid CDS150372 759 - 0.428195
SOA0164 iron-containing alcohol dehydrogenasemegaplasmid CDS152606 1152 - 0.453993
SOA0165 transcriptional regulator, LysR familymegaplasmid CDS154093 870 + 0.457471
SOA0167 ISSod9, transposasemegaplasmid CDS155302 2967 - 0.557465
SOA0168 ISSo9, nucleotidyltransferase domain proteinmegaplasmid CDS158432 291 + 0.505155
SOA0169 ISSod9, conserved hypothetical proteinmegaplasmid CDS158719 378 + 0.428571
SOA0170 ISSod9, DNA-invertasemegaplasmid CDS159090 558 + 0.514337
SOA0171 hypothetical proteinmegaplasmid CDS159920 258 + 0.306202
SOA0172 site-specific recombinase, resolvase familymegaplasmid CDS160178 627 - 0.45614
SOA0173 hypothetical proteinmegaplasmid CDS160979 267 - 0.41573
higA proteic killer suppressor proteinmegaplasmid CDS19154 300 + 0.41
higB proteic killer active proteinmegaplasmid CDS18774 306 + 0.336601
ompA outer membrane protein Amegaplasmid CDS99408 1029 + 0.467444
umuC umuC proteinmegaplasmid CDS10078 1257 - 0.488465
umuD umuD proteinmegaplasmid CDS11335 405 - 0.471605