Gene list
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Genomic element: B
Number of genes found: 119
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| Rhodobacter sphaeroides 2.4.1, 2.4.1; ATCC BAA-808 | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | RSP_3973 | transcriptional regulator, AsnC family | SubName: Full=Transcriptional regulator, AsnC family; | B | CDS | 81382 | 465 | - | 0.692473 |
| NA | RSP_3994 | B | sig_peptide | 53342 | 72 | - | 0.763889 | ||
| NA | RSP_4002 | Dihydrodipicolinate synthetase | SubName: Full=Dihydrodipicolinate synthetase; EC=4.3.3.7; | B | CDS | 46305 | 906 | - | 0.683223 |
| NA | RSP_4005 | oxidoreductase, NAD-binding site | SubName: Full=Oxidoreductase, NAD-binding site; | B | CDS | 43470 | 1341 | - | 0.745712 |
| NA | RSP_4017 | transcriptional regulator, GntR family | SubName: Full=Transcriptional regulator, GntR family; | B | CDS | 28731 | 1470 | - | 0.718367 |
| NA | RSP_3957 | Flavoprotein oxidoreductase | SubName: Full=Flavoprotein oxidoreductase; EC=1.14.14.9; EC=1.5.1.-; | B | CDS | 95632 | 528 | + | 0.715909 |
| NA | RSP_3968 | ABC branched chain amino acid transporter, periplasmic ligand binding protein | SubName: Full=Amino acid/amide ABC transporter substrate-binding protein, HAAT family; | B | CDS | 85514 | 1254 | + | 0.668262 |
| NA | RSP_3994 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | B | CDS | 53078 | 336 | - | 0.761905 |
| NA | RSP_4027 | B | sig_peptide | 14654 | 57 | + | 0.824561 | ||
| NA | RSP_3964 | ABC branched chain amino acid transporter, ATPase subunit | SubName: Full=Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family; | B | CDS | 89424 | 708 | + | 0.701977 |
| NA | RSP_4037 | B | sig_peptide | 3642 | 60 | + | 0.7 | ||
| NA | RSP_3946 | conserved hypothetical protein | SubName: Full=Glycine/D-amino acid oxidase, deaminating; | B | CDS | 105404 | 1413 | - | 0.745931 |
| NA | RSP_7367 | AbrB protein (AidB regulator) | SubName: Full=AbrB protein (AidB regulator); | B | CDS | 16621 | 1065 | - | 0.732394 |
| NA | RSP_7124 | conserved hypothetical protein | B | CDS | 62278 | 549 | + | 0.684882 | |
| NA | RSP_3971 | transcriptional regulator, GntR family | SubName: Full=Transcriptional regulator, GntR family; | B | CDS | 82655 | 747 | - | 0.694779 |
| NA | RSP_3982 | conserved hypothetical protein | SubName: Full=Signal transduction histidine kinase; | B | CDS | 70301 | 1437 | + | 0.700765 |
| NA | RSP_4024 | conserved hypothetical protein | B | CDS | 19541 | 777 | + | 0.7426 | |
| NA | RSP_3954 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | B | CDS | 98921 | 231 | - | 0.766234 |
| NA | RSP_3998 | B | sig_peptide | 50145 | 66 | + | 0.606061 | ||
| NA | RSP_3990 | Poly (3-hydroxybutyrate ) depolymerase | SubName: Full=Poly (3-hydroxybutyrate ) depolymerase; | B | CDS | 59130 | 1191 | - | 0.764064 |
| NA | RSP_3992 | conserved hypothetical membrane protein | B | CDS | 57058 | 681 | + | 0.704846 | |
| NA | RSP_7371 | short-chain alcohol dehydrogenases | SubName: Full=Short-chain alcohol dehydrogenase; EC=1.1.1.69; | B | CDS | 94858 | 765 | + | 0.72549 |
| NA | RSP_4035 | ABC sugar transporter, inner membrane subunit | SubName: Full=Carbohydrate ABC transporter membrane protein 2, CUT1 family; | B | CDS | 5912 | 813 | + | 0.665437 |
| NA | RSP_3979 | Ferredoxin | SubName: Full=Ferredoxin; | B | CDS | 72749 | 1062 | - | 0.696799 |
| NA | RSP_3963 | B | sig_peptide | 90154 | 84 | + | 0.702381 | ||
| NA | RSP_3972 | Short-chain dehydrogenase/reductase SDR | SubName: Full=Short chain dehydrogenase; | B | CDS | 81860 | 792 | - | 0.694444 |
| NA | RSP_4034 | ABC sugar transporter, ATPase subunit | SubName: Full=Carbohydrate ABC transporter ATP-binding protein, CUT1 family; | B | CDS | 6757 | 1059 | + | 0.694051 |
| NA | RSP_3967 | B | sig_peptide | 86764 | 72 | + | 0.652778 | ||
| NA | RSP_3995 | B | sig_peptide | 52324 | 75 | + | 0.733333 | ||
| NA | RSP_3975 | periplasmic sensor signal transduction histidine kinase | B | CDS | 77510 | 1317 | + | 0.753227 | |
| NA | RSP_4037 | ABC sugar transporter, periplasmic lignad binding protein | SubName: Full=Carbohydrate ABC transporter substrate-binding protein, CUT1 family; | B | CDS | 3642 | 1290 | + | 0.679845 |
| NA | RSP_3940 | conserved hypothetical protein | SubName: Full=Putative phosphosugar isomerase; | B | CDS | 111689 | 939 | - | 0.764643 |
| NA | RSP_7166 | B | sig_peptide | 76647 | 66 | - | 0.772727 | ||
| NA | RSP_3989 | NAD-dependent epimerase/dehydratase | SubName: Full=NAD-dependent epimerase/dehydratase; EC=5.1.3.2; | B | CDS | 61158 | 999 | - | 0.712713 |
| NA | RSP_3945 | Carbohydrate kinase, PfkB | SubName: Full=Carbohydrate kinase, PfkB; | B | CDS | 106818 | 858 | - | 0.72028 |
| NA | RSP_4014 | B | sig_peptide | 31924 | 102 | + | 0.666667 | ||
| NA | RSP_4018 | diguanylate cyclase | SubName: Full=Diguanylate cyclase; | B | CDS | 27710 | 936 | + | 0.701923 |
| NA | RSP_4039 | Protein of unknown function DUF583 | SubName: Full=Integral membrane protein CcmA involved in cell shape determination; | B | CDS | 1733 | 363 | + | 0.732782 |
| NA | RSP_3998 | ABC Glycine betaine/L-proline transporter, periplasmic ligand binding protein | SubName: Full=ABC Glycine betaine/L-proline transporter, periplasmic ligand binding protein; | B | CDS | 50145 | 987 | + | 0.655522 |
| NA | RSP_7172 | conserved hypothetical protein | SubName: Full=Putative transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain; | B | CDS | 60354 | 408 | - | 0.70098 |
| NA | RSP_4014 | TRAP-T family transporter, large inner membrane subunit DctM | SubName: Full=TRAP-T family transporter, large inner membrane subunit DctM; | B | CDS | 31924 | 1341 | + | 0.677107 |
| NA | RSP_3988 | possible glycosyltransferase | B | CDS | 62823 | 2382 | + | 0.676742 | |
| NA | RSP_3968 | B | sig_peptide | 85514 | 81 | + | 0.617284 | ||
| NA | RSP_3974 | Transketolase | SubName: Full=Transketolase; EC=1.2.4.1; | B | CDS | 79001 | 2367 | + | 0.705534 |
| NA | RSP_4008 | trimethylamine methyltransferase MttB-like protein | SubName: Full=Trimethylamine methyltransferase MttB-like protein; EC=2.1.1.-; | B | CDS | 39276 | 1554 | + | 0.681467 |
| NA | RSP_4006 | Short-chain dehydrogenase/reductase SDR | SubName: Full=Short-chain dehydrogenase/reductase SDR; | B | CDS | 41999 | 735 | + | 0.726531 |
| NA | RSP_3981 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | B | CDS | 71745 | 267 | - | 0.749064 |
| NA | RSP_3959 | conserved hypothetical protein | B | CDS | 92579 | 2283 | + | 0.690758 | |
| NA | RSP_4028 | Acyltransferase 3 family | SubName: Full=Acyltransferase 3 family; | B | CDS | 13573 | 1065 | + | 0.673239 |
| NA | RSP_3969 | protein of unknown function DUF849 | SubName: Full=Uncharacterized protein; | B | CDS | 84519 | 933 | + | 0.677385 |
| NA | RSP_3980 | Universal stress protein (Usp) | RecName: Full=Universal stress protein; | B | CDS | 72059 | 450 | - | 0.706667 |
| NA | RSP_4024 | B | sig_peptide | 19541 | 60 | + | 0.716667 | ||
| NA | RSP_7166 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | B | CDS | 76416 | 297 | - | 0.727273 |
| NA | RSP_3993 | Hemolysin-type calcium-binding protein | SubName: Full=Hemolysin-type calcium-binding protein; | B | CDS | 53501 | 3339 | - | 0.683438 |
| NA | RSP_3970 | 3-hydroxyacyl-CoA dehydrogenase | SubName: Full=3-hydroxybutyryl-CoA dehydrogenase; EC=1.1.1.35; | B | CDS | 83574 | 936 | + | 0.729701 |
| NA | RSP_3965 | ABC branched chain amino acid transporter, ATPase subunit | SubName: Full=Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family; | B | CDS | 88655 | 783 | + | 0.678161 |
| NA | RSP_4031 | Isocitrate/isopropylmalate dehydrogenase | SubName: Full=Tartrate dehydrogenase; EC=1.1.1.83; EC=1.1.1.93; EC=4.1.1.73; | B | CDS | 10377 | 1056 | + | 0.70928 |
| NA | RSP_7369 | two component transcriptional regulator, winged-helix family | SubName: Full=Two component transcriptional regulator, winged-helix family; | B | CDS | 76848 | 660 | + | 0.690909 |
| NA | RSP_3985 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | B | CDS | 66565 | 1467 | + | 0.734833 |
| NA | RSP_3967 | ABC branched chain amino acid transporter, inner membrane subunit | SubName: Full=Amino acid/amide ABC transporter membrane protein 1, HAAT family; | B | CDS | 86764 | 882 | + | 0.662132 |
| NA | RSP_4013 | conserved hypothetical protein | SubName: Full=Ketosteroid isomerase-like enzyme; EC=1.4.2.-; | B | CDS | 33282 | 396 | + | 0.712121 |
| NA | RSP_4004 | Short-chain dehydrogenase/reductase SDR | SubName: Full=Short-chain dehydrogenase/reductase SDR; | B | CDS | 42730 | 780 | + | 0.74359 |
| NA | RSP_3939 | transcriptional regulator, LacI family | SubName: Full=Transcriptional regulator, LacI family; | B | CDS | 112756 | 1065 | - | 0.719249 |
| NA | RSP_7366 | ABC sugar transporter, inner membrane subunit | SubName: Full=Carbohydrate ABC transporter membrane protein 1, CUT1 family; | B | CDS | 5076 | 837 | + | 0.682198 |
| NA | RSP_4007 | Mandelate racemase/muconate lactonizing enzyme | SubName: Full=Mandelate racemase/muconate lactonizing enzyme; | B | CDS | 40884 | 1107 | + | 0.712737 |
| NA | RSP_4010 | Conserved hypothetical protein 698 | SubName: Full=Putative membrane protein; | B | CDS | 37146 | 1020 | + | 0.722549 |
| NA | RSP_3963 | Short-chain dehydrogenase/reductase SDR | SubName: Full=2-hydroxycyclohexane-1-carbonyl-CoA dehydrogenase; EC=1.1.1.-; EC=1.1.1.100; EC=1.1.1.36; | B | CDS | 90154 | 756 | + | 0.675926 |
| NA | RSP_3986 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | B | CDS | 65293 | 1002 | + | 0.691617 |
| NA | RSP_3995 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | B | CDS | 52324 | 564 | + | 0.742908 |
| NA | RSP_4032 | Succinate semialdehyde dehydrogenase | SubName: Full=Succinate semialdehyde dehydrogenase; EC=1.2.1.16; | B | CDS | 8935 | 1446 | + | 0.717842 |
| NA | RSP_3991 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | B | CDS | 57879 | 1020 | + | 0.720588 |
| NA | RSP_3955 | Arginino succinate lyase | RecName: Full=Argininosuccinate lyase; Short=ASAL; EC=4.3.2.1; AltName: Full=Arginosuccinase; | B | CDS | 97425 | 1500 | - | 0.718 |
| NA | RSP_7370 | short-chain alcohol dehydrogenases | SubName: Full=Short-chain alcohol dehydrogenase; | B | CDS | 91770 | 744 | - | 0.701613 |
| NA | RSP_3956 | Sugar isomerase (SIS) | SubName: Full=Sugar isomerase (SIS); | B | CDS | 96319 | 1014 | - | 0.670611 |
| NA | RSP_3966 | ABC branched chain amino acid transporter, inner membrane subunit | SubName: Full=Amino acid/amide ABC transporter membrane protein 2, HAAT family; | B | CDS | 87645 | 1014 | + | 0.686391 |
| NA | RSP_4019 | B | sig_peptide | 26299 | 63 | + | 0.714286 | ||
| NA | RSP_7368 | Transcriptional regulator, GntR family | B | CDS | 47228 | 753 | - | 0.687915 | |
| NA | RSP_3997 | transcriptional regulator, AraC family | SubName: Full=Transcriptional regulator, AraC family with amidase-like domain; | B | CDS | 51181 | 951 | + | 0.696109 |
| NA | RSP_3978 | ring hydroxylating dioxygenase, alpha subunit | SubName: Full=Ring hydroxylating dioxygenase, alpha subunit; | B | CDS | 73814 | 1233 | - | 0.68532 |
| NA | RSP_4019 | transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | B | CDS | 26299 | 1005 | + | 0.713433 |
| NA | RSP_3948 | ABC sugar transporter, ATPase subunit | SubName: Full=Maltose ABC transporter ATP-binding proteintrehalose ABC transporter ATP-binding proteinsucrose ABC transporter ATP-binding protein; | B | CDS | 104224 | 1122 | - | 0.705882 |
| NA | RSP_3947 | transcriptional regulator, GntR family | SubName: Full=Transcriptional regulator, GntR family; | B | CDS | 103518 | 726 | + | 0.706612 |
| NA | RSP_4027 | hypothetical protein with parallel beta-helix repeat | SubName: Full=Uncharacterized protein; | B | CDS | 14654 | 1935 | + | 0.735917 |
| NA | RSP_3977 | transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | B | CDS | 75213 | 924 | + | 0.712121 |
| NA | RSP_3940 | B | sig_peptide | 112577 | 51 | - | 0.686275 | ||
| aapP | RSP_3950 | AABC amino acid transporter, ATPase subunit | SubName: Full=Amino acid ABC transporter ATP-binding protein, PAAT family; EC=3.6.3.-; | B | CDS | 101527 | 753 | - | 0.664011 |
| ansB | RSP_3949 | B | sig_peptide | 102498 | 75 | + | 0.76 | ||
| ansB | RSP_3949 | Asparaginase/glutaminase | SubName: Full=Asparaginase/glutaminase; EC=3.5.1.1; | B | CDS | 102498 | 999 | + | 0.746747 |
| dctP | RSP_4016 | TRAP-T family transporter, DctP subunit | B | CDS | 30256 | 1056 | + | 0.663826 | |
| dctQ | RSP_4015 | TRAP-T family transporter, periplasmic ligand binding protein, DctQ | SubName: Full=TRAP-T family transporter, periplasmic ligand binding protein, DctQ; | B | CDS | 31364 | 561 | + | 0.638146 |
| dhaL | RSP_4003 | Aldehyde dehydrogenase | SubName: Full=Aldehyde dehydrogenase; EC=1.2.1.-; EC=1.2.1.3; | B | CDS | 44807 | 1497 | - | 0.707415 |
| frlC | RSP_3944 | AP endonuclease, family 2 | SubName: Full=AP endonuclease, family 2; | B | CDS | 107672 | 858 | - | 0.730769 |
| fsr | RSP_4025 | Major facilitator superfamily, Fosmidomycin resistant protein | SubName: Full=Major facilitator superfamily, Fosmidomycin resistant protein; | B | CDS | 17973 | 1206 | - | 0.685738 |
| fumC | RSP_4020 | B | pseudo | 25696 | 267 | + | 0.71161 | ||
| glpR | RSP_4038 | transcriptional regulator, DeoR family | B | CDS | 2641 | 828 | + | 0.692029 | |
| gtpB | RSP_3951 | ABC amino acid transporter, periplasmic ligand binding protein | SubName: Full=Amino acid ABC transporter substrate-binding protein, PAAT family; | B | CDS | 100619 | 843 | - | 0.673784 |
| gtpB | RSP_3951 | B | sig_peptide | 101378 | 84 | - | 0.75 | ||
| gtpC | RSP_3952 | ABC amino acid transporter, inner membrane subunit | SubName: Full=Amino acid ABC transporter membrane protein 1, PAAT family; | B | CDS | 99890 | 669 | - | 0.678625 |
| gtpD | RSP_3953 | ABC amino acid transporter, inner membrane subunit | SubName: Full=Amino acid ABC transporter membrane protein 2, PAAT family; | B | CDS | 99154 | 732 | - | 0.680328 |
| ilvB2 | RSP_4011 | Pyruvate decarboxylase | SubName: Full=Sulfoacetaldehyde acetyltransferase; EC=2.3.3.15; | B | CDS | 35085 | 1782 | + | 0.684624 |
| kaiB2 | RSP_3983 | circadian clock KaiB-like protein | SubName: Full=Circadian clock KaiB-like protein; | B | CDS | 70026 | 270 | + | 0.622222 |
| kaiC2 | RSP_3984 | RecA DNA recombination protein | SubName: Full=Circadian clock protein KaiC; | B | CDS | 68311 | 1713 | + | 0.680093 |
| pcaD | RSP_3962 | Esterase/lipase/thioesterase | SubName: Full=3-oxoadipate enol-lactonase; EC=3.1.1.24; | B | CDS | 90920 | 801 | + | 0.686642 |
| proV | RSP_4000 | ABC Glycine betaine/L-proline transporter, ATPase subunit | SubName: Full=ABC Glycine betaine/L-proline transporter, ATPase subunit; EC=3.6.3.32; | B | CDS | 48080 | 1089 | + | 0.671258 |
| proW | RSP_3999 | ABC Glycine betaine/L-proline transporter, inner membrane subunit | SubName: Full=ABC Glycine betaine/L-proline transporter, inner membrane subunit; | B | CDS | 49168 | 942 | + | 0.684713 |
| pta | RSP_4009 | Phosphate acetyl/butaryl transferase | SubName: Full=Phosphotransacetylase; EC=2.3.1.8; | B | CDS | 38175 | 999 | + | 0.742743 |
| repA3 | RSP_4023 | ATPase, ParA type | SubName: Full=ATPase, ParA type; | B | CDS | 20487 | 1179 | + | 0.653944 |
| repB1 | RSP_4022 | B | sig_peptide | 21662 | 63 | + | 0.714286 | ||
| repB1 | RSP_4022 | ParB-like partition protein | SubName: Full=ParB-like partition protein; | B | CDS | 21662 | 951 | + | 0.678233 |
| repC2 | RSP_4021 | Replication protein C | B | CDS | 22769 | 1302 | + | 0.68894 | |
| tauD | RSP_4012 | FAD dependent oxidoreductase | SubName: Full=FAD dependent oxidoreductase; EC=1.14.11.17; EC=1.4.2.-; | B | CDS | 33684 | 1389 | + | 0.712743 |
| tdh | RSP_4033 | Zinc-containing alcohol dehydrogenase | SubName: Full=Zinc-containing alcohol dehydrogenase; | B | CDS | 7843 | 1014 | + | 0.696252 |
| y4bF | RSP_4040 | B | pseudo | 621 | 801 | + | 0.682896 | ||
| yihT | RSP_4030 | Tagatose 1,6-diphosphate aldolase | SubName: Full=Tagatose 1,6-diphosphate aldolase; | B | CDS | 11462 | 870 | + | 0.733333 |
| yihV | RSP_4029 | Carbohydrate kinase, PfkB | SubName: Full=Carbohydrate kinase, PfkB; | B | CDS | 12357 | 900 | + | 0.778889 |
| yurM | RSP_3943 | ABC sugar transporter, inner membrane subunit | SubName: Full=Carbohydrate ABC transporter membrane protein 2, CUT1 family; | B | CDS | 108526 | 846 | - | 0.659574 |
| yurN | RSP_3942 | ABC sugar transporter, inner membrane subunit | SubName: Full=Carbohydrate ABC transporter membrane protein 1, CUT1 family; | B | CDS | 109368 | 966 | - | 0.651139 |
| yurO | RSP_3941 | ABC sugar transporter, periplasmic ligand binding protein | SubName: Full=Carbohydrate ABC transporter substrate-binding protein, CUT1 family; | B | CDS | 110333 | 1311 | - | 0.655225 |
| yurO | RSP_3941 | B | sig_peptide | 111566 | 78 | - | 0.705128 | ||
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