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2024-11-01 00:08:55

Gene list

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Genomic element: Ti

Number of genes found: 172

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Agrobacterium tumefaciens
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Ti misc_feature182259 1460 + 0.60274
NA Ti misc_feature13154 24 + 0.375
NA Ti misc_feature22888 29 + 0.241379
NA Ti misc_feature14994 24 + 0.416667
NA Ti misc_feature22855 24 + 0.416667
NA Ti misc_feature13187 30 + 0.366667
NA Ti misc_feature1 25 + 0.32
IS71 Ti repeat_region161652 4944 + 0.602953
agaA agaATi CDS77313 1530 - 0.543791
agaB agaBTi CDS79693 972 - 0.5607
agaC agaCTi CDS78869 828 - 0.570048
agaD agaDTi CDS80664 1710 - 0.551462
agaE agaETi CDS82856 1314 + 0.575342
agaF agaFTi CDS84210 2055 + 0.574696
agaG agaGTi CDS86261 1653 + 0.579552
agcA agcATi CDS66829 1209 - 0.588089
ags agsTi CDS21294 1188 - 0.530303
agtA agtATi CDS65750 1080 - 0.597222
agtB agtBTi CDS64634 1095 - 0.556164
agtC agtCTi CDS63696 942 - 0.565817
agtD agtDTi CDS62854 846 - 0.552009
apeA apeATi CDS23691 1404 - 0.559117
gene 3' gene 3' proteinTi CDS16945 696 + 0.472701
gene 4' gene 4' proteinTi CDS15793 414 + 0.475845
gene 5 gene 5 proteinTi CDS754 519 + 0.427746
gene 7 gene 7 proteinTi CDS2000 381 - 0.430446
hupT hupTTi CDS26747 279 - 0.577061
iaaH iaaHTi CDS3153 1404 - 0.507123
iaaM iaaMTi CDS4902 2268 + 0.495591
ipt iptTi CDS7864 723 + 0.500692
mas1' mas1'Ti CDS19708 1293 + 0.509667
mas2' mas2'Ti CDS18142 1083 - 0.506002
mclA mclATi CDS60058 2220 - 0.541441
mclB mclBTi CDS54511 516 - 0.579457
moaA moaATi CDS94865 1569 + 0.544933
moaB moaBTi CDS91164 942 + 0.553079
moaC moaCTi CDS92102 882 + 0.564626
moaD moaDTi CDS92983 1767 + 0.577816
moaR moaRTi CDS89408 867 - 0.538639
mocA mocATi CDS74042 1065 + 0.57277
mocB mocBTi CDS72198 1821 + 0.573861
mocC mocCTi CDS71425 747 + 0.56091
mocD mocDTi CDS68914 1023 - 0.562072
mocE mocETi CDS68086 819 - 0.58486
mocR mocRTi CDS70181 987 + 0.569402
mocS mocSTi CDS75445 945 + 0.55873
motA motATi CDS58897 1065 - 0.562441
motB motBTi CDS57660 1185 - 0.542616
motC motCTi CDS56771 885 - 0.535593
motD motDTi CDS55953 822 - 0.525547
msh mshTi CDS44218 948 - 0.595992
occJ occJTi CDS50202 831 - 0.570397
occM occMTi CDS51869 738 - 0.555556
occP occPTi CDS51088 789 - 0.607098
occQ occQTi CDS52606 714 - 0.60084
occR occRTi CDS53469 897 + 0.571906
ocd ocdTi CDS45496 1071 - 0.563025
ocs ocsTi CDS11651 1077 - 0.513463
ons onsTi CDS9089 576 + 0.46875
ooxA ooxATi CDS47202 1512 - 0.609788
ooxB ooxBTi CDS49014 1116 - 0.581541
ophA ophATi CDS42632 1560 - 0.573077
ophB ophBTi CDS41574 1005 - 0.59204
ophC ophCTi CDS40765 813 - 0.592866
ophD ophDTi CDS39989 780 - 0.603846
ophE ophETi CDS39168 819 - 0.587302
repA repATi CDS107313 1218 + 0.54844
repB repBTi CDS108727 1044 + 0.537356
repC repCTi CDS109976 1320 + 0.570455
tml tmlTi CDS10150 624 - 0.488782
traA traATi CDS30831 3303 + 0.606116
traB traBTi CDS34650 1227 + 0.612877
traC traCTi CDS30281 297 - 0.62963
traD traDTi CDS30061 246 - 0.609756
traF traFTi CDS34130 531 + 0.606403
traG traGTi CDS28152 1923 - 0.605824
traH traHTi CDS35893 630 + 0.584127
traI traITi CDS106314 639 - 0.604069
traM traMTi CDS37666 309 + 0.543689
traR traRTi CDS38453 705 - 0.592908
trbB trbBTi CDS105346 972 - 0.622428
trbC trbCTi CDS104952 405 - 0.632099
trbD trbDTi CDS104660 300 - 0.596667
trbE trbETi CDS102187 2463 - 0.611043
trbF trbFTi CDS99324 663 - 0.594269
trbG trbGTi CDS98453 855 - 0.59883
trbH trbHTi CDS97977 480 - 0.625
trbI trbITi CDS96666 1302 - 0.597542
trbJ trbJTi CDS101406 810 - 0.580247
trbK trbKTi CDS101182 228 - 0.627193
trbL trbLTi CDS100001 1188 - 0.627104
trlR trlRTi CDS55185 639 - 0.58216
virA virATi CDS145694 2490 + 0.497992
virB1 virB1Ti CDS151232 720 + 0.526389
virB10 virB10Ti CDS158463 1134 + 0.553792
virB11 virB11Ti CDS159636 1032 + 0.525194
virB2 virB2Ti CDS151966 366 + 0.581967
virB3 virB3Ti CDS152331 327 + 0.550459
virB4 virB4Ti CDS152657 2370 + 0.534599
virB5 virB5Ti CDS155041 663 + 0.546003
virB6 virB6Ti CDS155800 888 + 0.525901
virB7 virB7Ti CDS156721 168 + 0.553571
virB8 virB8Ti CDS156896 693 + 0.544012
virB9 virB9Ti CDS157585 882 + 0.539683
virC1 virC1Ti CDS167280 696 - 0.514368
virC2 virC2Ti CDS166669 609 - 0.545156
virD1 virD1Ti CDS168244 444 + 0.531532
virD2 virD2Ti CDS168721 1275 + 0.549804
virD3 virD3Ti CDS170015 606 + 0.537954
virD4 virD4Ti CDS170649 1971 + 0.515982
virD5 virD5Ti CDS172711 2502 + 0.527178
virE1 virE1Ti CDS175665 198 + 0.515152
virE2 virE2Ti CDS175867 1602 + 0.51186
virE3 virE3Ti CDS177534 2019 + 0.521545
virF virFTi CDS184764 609 + 0.487685
virG virGTi CDS160877 726 + 0.509642
virH1 virH1Ti CDS141158 1269 + 0.533491
virH2 virH2Ti CDS142447 1224 + 0.544935
virJ virJTi CDS148762 768 + 0.497396
virK virKTi CDS143942 438 + 0.488584
virL virLTi CDS137085 948 + 0.489451
virM virMTi CDS136354 468 + 0.482906
virP virPTi CDS186957 633 + 0.450237
virR virRTi CDS188254 528 + 0.543561
ybd Ti repeat_region13244 375 + 0.541333
ybe Ti repeat_region13636 546 + 0.591575
ybf Ti repeat_region14183 484 + 0.586777
ycf ycfTi CDS25170 849 - 0.551237
ycg ycgTi CDS26188 498 - 0.634538
ych ychTi CDS27163 258 - 0.581395
yci yciTi CDS27697 315 - 0.552381
ydh ydhTi CDS37045 285 + 0.561404
yhg yhgTi CDS76444 777 + 0.559846
yii yiiTi CDS88120 585 + 0.577778
yja yjaTi CDS90352 423 - 0.56974
ylb ylbTi CDS111566 573 - 0.609075
ylc ylcTi CDS112679 414 - 0.543478
yld yldTi CDS113363 1092 - 0.605311
yle yleTi CDS114447 402 - 0.564677
ylf ylfTi CDS115337 954 + 0.655136
ylg ylgTi CDS116293 681 + 0.599119
ylh ylhTi CDS117136 2031 + 0.545544
yli yliTi CDS119291 1143 + 0.531059
yma ymaTi CDS120572 846 + 0.535461
ymb ymbTi CDS121567 525 + 0.546667
ymc ymcTi CDS122268 1116 + 0.519713
ymd ymdTi CDS123380 1338 + 0.581465
yme ymeTi CDS124798 1983 - 0.541099
ymf ymfTi CDS126780 507 - 0.542406
ymg ymgTi CDS127283 1167 - 0.552699
ymh ymhTi CDS128665 801 - 0.545568
ymi ymiTi CDS129462 204 - 0.588235
ymj ymjTi CDS129683 390 - 0.569231
yna ynaTi CDS130213 1590 - 0.560377
ynb ynbTi CDS131811 639 - 0.58216
ync yncTi CDS132665 936 - 0.587607
ynd yndTi CDS133590 630 - 0.58254
yne yneTi CDS135039 423 + 0.460993
ynf ynfTi CDS135772 147 + 0.517007
yng yngTi CDS135905 180 + 0.45
ynh ynhTi CDS138463 480 + 0.572917
yni yniTi CDS138926 354 + 0.581921
ynj Ti repeat_region139736 996 + 0.587349
yoe Ti repeat_region144428 906 + 0.556291
yoi Ti repeat_region148405 144 + 0.548611
ypa Ti repeat_region150015 830 + 0.510843
ysa ysaTi CDS180164 309 + 0.556634
ysb ysbTi CDS180902 303 + 0.613861
yse yseTi CDS183715 531 + 0.623352
ysf ysfTi CDS185774 297 + 0.548822
ysg ysgTi CDS186067 243 + 0.452675
ysj ysjTi CDS188974 642 - 0.580997