Gene list
Applied filters:
Gene type: CDS
Genomic element: pCD1
Number of genes found: 85
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Yersinia pestis biovar Medievalis str. 91001, 91001 | ||||||||
---|---|---|---|---|---|---|---|---|
Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | pCD83 | IS1222-like transposase | pCD1 | CDS | 57782 | 498 | - | 0.53012 |
NA | pCD98 | hypothetical protein | pCD1 | CDS | 69803 | 324 | + | 0.487654 |
NA | pCD90 | hypothetical protein | pCD1 | CDS | 62248 | 330 | - | 0.281818 |
NA | pCD97 | hypothetical protein | pCD1 | CDS | 69146 | 492 | + | 0.554878 |
NA | pCD84 | hypothetical protein | pCD1 | CDS | 58463 | 216 | - | 0.49537 |
NA | pCD02 | putative ATP-binding protein | pCD1 | CDS | 1106 | 783 | + | 0.50447 |
NA | pCD62 | hypothetical protein | pCD1 | CDS | 44639 | 120 | - | 0.475 |
NA | pCD88 | putative transposase | pCD1 | CDS | 61049 | 810 | - | 0.504938 |
NA | pCD57 | hypothetical protein | pCD1 | CDS | 42199 | 324 | - | 0.388889 |
NA | pCD72 | hypothetical protein | pCD1 | CDS | 50846 | 459 | + | 0.553377 |
NA | pCD78 | hypothetical protein | pCD1 | CDS | 55767 | 276 | + | 0.431159 |
NA | pCD89 | putative transposase | pCD1 | CDS | 61882 | 267 | - | 0.479401 |
NA | pCD12 | hypothetial protein | pCD1 | CDS | 6747 | 450 | + | 0.451111 |
NA | pCD10 | hypothetical protein | pCD1 | CDS | 5934 | 243 | + | 0.539095 |
NA | pCD71 | hypothetical protein | pCD1 | CDS | 50499 | 324 | + | 0.481481 |
NA | pCD65 | hypothetical protein | pCD1 | CDS | 46324 | 390 | + | 0.276923 |
NA | pCD76 | hypothetical protein | pCD1 | CDS | 54686 | 249 | + | 0.502008 |
NA | pCD79 | putative plasmid stabilization element ParE | pCD1 | CDS | 56035 | 300 | + | 0.38 |
NA | pCD04 | possible transposase | pCD1 | CDS | 2229 | 405 | - | 0.516049 |
NA | pCD91 | hypothetical protein | pCD1 | CDS | 62716 | 465 | - | 0.301075 |
NA | pCD16 | hypothetical protein | pCD1 | CDS | 11858 | 207 | + | 0.608696 |
NA | pCD64 | hypothetical protein | pCD1 | CDS | 45633 | 420 | - | 0.388095 |
NA | pCD59 | hypothetical protein | pCD1 | CDS | 42691 | 210 | + | 0.428571 |
NA | pCD03 | hypothetical protein | pCD1 | CDS | 1959 | 399 | + | 0.538847 |
NA | pCD15 | putative transposase protein | pCD1 | CDS | 11250 | 537 | - | 0.49162 |
NA | pCD09 | hypothetical protein | pCD1 | CDS | 5416 | 219 | - | 0.488584 |
NA | pCD85 | probable transposase | pCD1 | CDS | 58682 | 1020 | + | 0.552941 |
NA | pCD80 | hypothetical protein | pCD1 | CDS | 56176 | 297 | - | 0.373737 |
NA | pCD05 | endonuclease-like protein | pCD1 | CDS | 2654 | 369 | + | 0.487805 |
ORFA | pCD20 | putative transposase ORFA | pCD1 | CDS | 15028 | 267 | - | 0.434457 |
ORFB | pCD19 | putative transposase | pCD1 | CDS | 14570 | 435 | - | 0.455172 |
ORFC | pCD18 | putative transposase | pCD1 | CDS | 14265 | 309 | - | 0.459547 |
lcrG | pCD51 | probable Yop regulator LcrG | pCD1 | CDS | 37671 | 288 | + | 0.46875 |
lcrR | pCD50 | hypothetical protein LcrR | pCD1 | CDS | 37189 | 441 | + | 0.489796 |
lcrV | pCD52 | V antigen LcrV | pCD1 | CDS | 37960 | 975 | + | 0.377436 |
repA | pCD08 | replication protein RepA-like protein | pCD1 | CDS | 3723 | 867 | + | 0.542099 |
repB | pCD06 | replication protein RepB-like protein | pCD1 | CDS | 3160 | 255 | + | 0.423529 |
sopA | pCD74 | putative plasmid partitioning transcription repressor | pCD1 | CDS | 52458 | 1119 | + | 0.440572 |
sopB | pCD75 | putative plasmid partitioning control protein | pCD1 | CDS | 53561 | 978 | + | 0.4182 |
sycD | pCD53 | putative yopB/yopD chaperone SycD | pCD1 | CDS | 38937 | 507 | + | 0.441815 |
sycE | pCD82 | putative yopE chaperone SycE | pCD1 | CDS | 57327 | 393 | + | 0.409669 |
sycH | pCD87 | putative yopH targeting protein SycH | pCD1 | CDS | 60476 | 426 | + | 0.41784 |
sycN | pCD46 | putative type III secretion protein SycN | pCD1 | CDS | 34014 | 372 | + | 0.526882 |
sycT | pCD66 | putative yopT chaperone SycT | pCD1 | CDS | 46757 | 399 | - | 0.411028 |
tap | pCD07 | putative repA translation protein | pCD1 | CDS | 3656 | 75 | + | 0.44 |
tnp | pCD01 | putative transposase | pCD1 | CDS | 87 | 1023 | + | 0.527859 |
tnpA | pCD93 | putative transposase | pCD1 | CDS | 63914 | 2316 | + | 0.519862 |
tnpR | pCD92 | putative resolvase | pCD1 | CDS | 63199 | 636 | - | 0.446541 |
tyeA | pCD45 | Yop secretion and targeting control protein TyeA | pCD1 | CDS | 33749 | 279 | + | 0.433692 |
virF | pCD34 | putative thermoregulatory protein VirF | pCD1 | CDS | 23948 | 816 | - | 0.416667 |
virG | pCD35 | putative Yop targeting lipoprotein VirG | pCD1 | CDS | 24887 | 396 | - | 0.444444 |
yopB | pCD54 | putative Yop targeting protein YopB | pCD1 | CDS | 39421 | 1206 | + | 0.466833 |
yopD | pCD55 | putative Yop negative regulation/targeting component YopD | pCD1 | CDS | 40645 | 921 | + | 0.431053 |
yopE | pCD81 | putative outer membrane virulence protein YopE | pCD1 | CDS | 56474 | 660 | - | 0.510606 |
yopH | pCD17 | putative protein-tyrosine phosphatase Yop effector YopH | pCD1 | CDS | 12347 | 1407 | + | 0.474058 |
yopJ | pCD14 | putative targeted effector protein YopJ | pCD1 | CDS | 9798 | 867 | + | 0.346021 |
yopM | pCD60 | putative targeted effector protein YopM | pCD1 | CDS | 43294 | 1104 | + | 0.39221 |
yopN | pCD44 | putative membrane-bound Yop targeting protein YopN | pCD1 | CDS | 32887 | 882 | + | 0.460317 |
yopQ | pCD68 | putative virulence determinant protein YopQ | pCD1 | CDS | 48608 | 564 | + | 0.336879 |
yopT | pCD67 | putative cytotoxic effector protein YopT | pCD1 | CDS | 47155 | 969 | - | 0.431373 |
ypkA | pCD13 | putative targeted effector protein kinase YpkA | pCD1 | CDS | 7204 | 2199 | + | 0.481583 |
yscA | pCD33 | hypothetical protein YscA | pCD1 | CDS | 23771 | 99 | - | 0.313131 |
yscB | pCD32 | hypothetical protein | pCD1 | CDS | 23132 | 414 | - | 0.417874 |
yscC | pCD31 | putative type III secretion protein YscC | pCD1 | CDS | 21303 | 1824 | - | 0.454496 |
yscD | pCD30 | putative type III secretion protein YscD | pCD1 | CDS | 20047 | 1260 | - | 0.46746 |
yscE | pCD29 | putative type III secretion protein YscE | pCD1 | CDS | 19850 | 201 | - | 0.422886 |
yscF | pCD28 | putative type III secretion protein YscF | pCD1 | CDS | 19586 | 264 | - | 0.416667 |
yscG | pCD27 | putative type III secretion protein YscG | pCD1 | CDS | 19237 | 348 | - | 0.439655 |
yscH | pCD26 | putative type III secretion protein YscH | pCD1 | CDS | 18743 | 498 | - | 0.429719 |
yscI | pCD25 | putative type III secretion protein YscI | pCD1 | CDS | 18395 | 348 | - | 0.468391 |
yscJ | pCD24 | putative type III secretion lipoprotein YscJ | pCD1 | CDS | 17654 | 735 | - | 0.428571 |
yscK | pCD23 | putative type III secretion protein YscK | pCD1 | CDS | 17025 | 651 | - | 0.483871 |
yscL | pCD22 | putative typee III secretion protein YscL | pCD1 | CDS | 16414 | 666 | - | 0.447447 |
yscM | pCD21 | putative type III secretion regulatory protein YscM | pCD1 | CDS | 15842 | 348 | - | 0.479885 |
yscN | pCD43 | putative Yops secretion ATP synthase YscN | pCD1 | CDS | 31370 | 1320 | - | 0.508333 |
yscO | pCD42 | putative type III secretion protein YscO | pCD1 | CDS | 30909 | 465 | - | 0.458065 |
yscP | pCD41 | putative type III secretion protein YscP | pCD1 | CDS | 29542 | 1368 | - | 0.486842 |
yscQ | pCD40 | putative type III secretion protein YscQ | pCD1 | CDS | 28622 | 924 | - | 0.481602 |
yscR | pCD39 | putative Yop secretion membrane protein YscR | pCD1 | CDS | 27972 | 654 | - | 0.43578 |
yscS | pCD38 | type III secretion protein yscS YscS | pCD1 | CDS | 27704 | 267 | - | 0.453184 |
yscT | pCD37 | putative type III secretion protein YscT | pCD1 | CDS | 26922 | 786 | - | 0.428753 |
yscU | pCD36 | putative type III secretion protein YscU | pCD1 | CDS | 25858 | 1065 | - | 0.431925 |
yscV | pCD49 | putative membrane-bound Yop protein YscV | pCD1 | CDS | 35078 | 2115 | + | 0.463357 |
yscX | pCD47 | putative type III secretion protein YscX | pCD1 | CDS | 34382 | 369 | + | 0.495935 |
yscY | pCD48 | putative type III secretion protein YscY | pCD1 | CDS | 34747 | 345 | + | 0.46087 |