Gene list
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Gene type: CDS
Genomic element: pCD1
Number of genes found: 89
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Yersinia pestis CO92, CO-92 Biovar Orientalis | |||||||||
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Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
YPCD1.01 | putative transposase | SubName: Full=IS transposase; SubName: Full=ORF 78; SubName: Full=ORF12; SubName: Full=Putative transposase; SubName: Full=Putative transposase, N end of IS100 transframe protein; SubName: Full=Putative transposase-orf1 protein; SubName: Full=Transposase; SubName: Full=Transposase for insertion sequence IS100; | pCD1 | CDS | 88 | 1023 | + | 0.527859 | |
YPCD1.02 | putative ATP-binding protein | SubName: Full=ATP-binding protein; SubName: Full=ORF 77; SubName: Full=ORF11; SubName: Full=Putative ATP-binding protein; SubName: Full=Putative transposase; SubName: Full=Transposase; | pCD1 | CDS | 1110 | 780 | + | 0.503846 | |
YPCD1.03c | SubName: Full=YPCD1.03c protein; Flags: Fragment; | pCD1 | CDS | 1956 | 249 | - | 0.497992 | ||
YPCD1.04 | SubName: Full=YPCD1.04 protein; Flags: Fragment; | pCD1 | CDS | 2304 | 648 | + | 0.546296 | ||
YPCD1.05c | putative yopE chaperone | RecName: Full=YopE regulator; | pCD1 | CDS | 3014 | 393 | - | 0.409669 | |
YPCD1.06 | putative outer membrane virulence protein | RecName: Full=Outer membrane virulence protein YopE; | pCD1 | CDS | 3600 | 660 | + | 0.510606 | |
YPCD1.07 | hypothetical protein YPCD1.07 | SubName: Full=Uncharacterized protein; | pCD1 | CDS | 4261 | 297 | + | 0.373737 | |
YPCD1.08c | hypothetical protein YPCD1.08c | SubName: Full=ParE toxin protein; SubName: Full=Putative plasmid stabilization element ParE; SubName: Full=Uncharacterized protein; | pCD1 | CDS | 4399 | 300 | - | 0.38 | |
YPCD1.09c | hypothetical protein YPCD1.09c | RecName: Full=Antitoxin ParD; | pCD1 | CDS | 4691 | 276 | - | 0.431159 | |
YPCD1.10c | SubName: Full=YPCD1.10c protein; Flags: Fragment; | pCD1 | CDS | 5149 | 249 | - | 0.429719 | ||
YPCD1.12c | putative plasmid partitioning control protein | SubName: Full=Plasmid partitioning control protein; SubName: Full=Putative plasmid partitioning control protein; | pCD1 | CDS | 6195 | 963 | - | 0.417445 | |
YPCD1.13c | putative plasmid partitioning transcription repressor | SubName: Full=Chromosome partitioning protein ParA; SubName: Full=Putative plasmid partitioning transcription repressor; SubName: Full=SopAB transcription repressor; | pCD1 | CDS | 7157 | 1167 | - | 0.441302 | |
YPCD1.14c | putative transposase remnant | SubName: Full=Putative transposase remnant; Flags: Fragment; | pCD1 | CDS | 9123 | 264 | - | 0.503788 | |
YPCD1.15c | hypothetical protein YPCD1.15c | SubName: Full=Transposase; SubName: Full=Uncharacterized protein; | pCD1 | CDS | 9429 | 459 | - | 0.551198 | |
YPCD1.16c | hypothetical protein YPCD1.16c | SubName: Full=Uncharacterized protein; | pCD1 | CDS | 9911 | 324 | - | 0.481481 | |
YPCD1.18c | SubName: Full=YPCD1.18c protein; Flags: Fragment; | pCD1 | CDS | 11260 | 144 | - | 0.527778 | ||
YPCD1.19c | putative virulence determinant protein | SubName: Full=Putative virulence determinant protein; SubName: Full=Type III secretion negative modulator of injection; SubName: Full=Yop targeting protein; SubName: Full=YopK (YopQ) homolog; | pCD1 | CDS | 11562 | 549 | - | 0.335155 | |
YPCD1.20 | putative cytotoxic effector protein | RecName: Full=Cysteine protease YopT; EC=3.4.22.-; | pCD1 | CDS | 12610 | 969 | + | 0.431373 | |
YPCD1.21 | putative yopT chaperone | RecName: Full=Chaperone protein SycT; | pCD1 | CDS | 13578 | 399 | + | 0.411028 | |
YPCD1.22c | hypothetical protein YPCD1.22c | SubName: Full=Uncharacterized protein; | pCD1 | CDS | 14020 | 390 | - | 0.276923 | |
YPCD1.23 | hypothetical protein YPCD1.23 | SubName: Full=Uncharacterized protein; | pCD1 | CDS | 14681 | 420 | + | 0.388095 | |
YPCD1.24c | SubName: Full=YPCD1.24c protein; Flags: Fragment; | pCD1 | CDS | 15628 | 219 | - | 0.461187 | ||
YPCD1.25 | SubName: Full=YPCD1.25 protein; Flags: Fragment; | pCD1 | CDS | 15976 | 318 | + | 0.440252 | ||
YPCD1.26c | putative targeted effector protein | RecName: Full=Outer membrane protein YopM; | pCD1 | CDS | 16336 | 1230 | - | 0.389431 | |
YPCD1.28c | putative Yop negative regulation/targeting component | SubName: Full=Putative Yop negative regulation/targeting component; SubName: Full=Putative Yop negative regulation/targeting component YopD; SubName: Full=Type III secretion host injection and negative regulator protein; SubName: Full=Yop targeting negative regulator; SubName: Full=YopD homolog; | pCD1 | CDS | 19294 | 921 | - | 0.431053 | |
YPCD1.29c | putative Yop targeting protein | SubName: Full=Putative Yop targeting protein; SubName: Full=Putative Yop targeting protein YopB; SubName: Full=Type III secretion host injection protein; SubName: Full=Yop targeting protein; SubName: Full=YopB homolog; | pCD1 | CDS | 20233 | 1206 | - | 0.466833 | |
YPCD1.30c | putative yopB/yopD chaperone | RecName: Full=Low calcium response locus protein H; | pCD1 | CDS | 21416 | 507 | - | 0.441815 | |
YPCD1.31c | putative V antigen, antihost protein/regulator | RecName: Full=Virulence-associated V antigen; AltName: Full=Low calcium response locus protein V; | pCD1 | CDS | 21935 | 981 | - | 0.377166 | |
YPCD1.32c | putative Yop regulator | RecName: Full=Low calcium response locus protein G; | pCD1 | CDS | 22917 | 288 | - | 0.46875 | |
YPCD1.33c | hypothetical protein lcrR | RecName: Full=Low calcium response locus protein R; | pCD1 | CDS | 23246 | 441 | - | 0.487528 | |
YPCD1.34c | putative membrane-bound Yop protein | RecName: Full=Low calcium response locus protein D; | pCD1 | CDS | 23683 | 2115 | - | 0.463357 | |
YPCD1.35c | putative type III secretion protein | RecName: Full=Chaperone protein YscY; AltName: Full=Yop proteins translocation protein Y; | pCD1 | CDS | 25784 | 345 | - | 0.46087 | |
YPCD1.36c | putative type III secretion protein | RecName: Full=Yop proteins translocation protein X; | pCD1 | CDS | 26125 | 369 | - | 0.495935 | |
YPCD1.37c | putative type III secretion protein | RecName: Full=Chaperone protein SycN; | pCD1 | CDS | 26490 | 372 | - | 0.526882 | |
YPCD1.38c | putative Yop secretion and targeting protein | RecName: Full=Protein TyeA; | pCD1 | CDS | 26848 | 279 | - | 0.433692 | |
YPCD1.39c | putative membrane-bound Yop targeting protein | RecName: Full=Outer membrane protein YopN; AltName: Full=LcrE; AltName: Full=Yop4b; | pCD1 | CDS | 27107 | 882 | - | 0.461451 | |
YPCD1.40 | putative Yops secretion ATP synthase | SubName: Full=Putative Yops secretion ATP synthase; SubName: Full=Putative Yops secretion ATP synthase YscN; SubName: Full=Yops secretion ATPase YscN homolog; SubName: Full=Yops secretion protein; | pCD1 | CDS | 28186 | 1320 | + | 0.508333 | |
YPCD1.41 | putative type III secretion protein | SubName: Full=Putative type III secretion protein; SubName: Full=Putative type III secretion protein YscO; SubName: Full=Type III secretion protein; SubName: Full=Type III secretion spans bacterial envelope protein; SubName: Full=Yop proteins translocation protein O; SubName: Full=YscO; | pCD1 | CDS | 29502 | 465 | + | 0.458065 | |
YPCD1.42 | putative type III secretion protein | RecName: Full=Yop proteins translocation protein P; | pCD1 | CDS | 29966 | 1368 | + | 0.486842 | |
YPCD1.43 | putative type III secretion protein | RecName: Full=Yop proteins translocation protein Q; | pCD1 | CDS | 31330 | 924 | + | 0.481602 | |
YPCD1.44 | putative Yop secretion membrane protein | RecName: Full=Yop proteins translocation protein R; | pCD1 | CDS | 32250 | 654 | + | 0.43578 | |
YPCD1.45 | putative type III secretion protein | RecName: Full=Yop proteins translocation protein S; | pCD1 | CDS | 32905 | 267 | + | 0.453184 | |
YPCD1.46 | putative type III secretion protein | RecName: Full=Yop proteins translocation protein T; | pCD1 | CDS | 33168 | 786 | + | 0.428753 | |
YPCD1.47 | putative type III secretion protein | RecName: Full=Yop proteins translocation protein U; | pCD1 | CDS | 33953 | 1065 | + | 0.431925 | |
YPCD1.48 | putative Yop targeting lipoprotein | SubName: Full=Pre-lipoprotein VirG homolog; SubName: Full=Putative Yop targeting lipoprotein; SubName: Full=Putative Yop targeting lipoprotein VirG; SubName: Full=YscC lipoprotein chaperone; | pCD1 | CDS | 35593 | 396 | + | 0.444444 | |
YPCD1.49 | putative thermoregulatory protein | RecName: Full=Thermoregulatory protein LcrF; | pCD1 | CDS | 36112 | 816 | + | 0.416667 | |
YPCD1.50 | hypothetical protein YPCD1.50 | RecName: Full=Yop proteins translocation protein A; | pCD1 | CDS | 37006 | 99 | + | 0.313131 | |
YPCD1.51 | hypothetical protein YPCD1.51 | RecName: Full=Chaperone protein YscB; AltName: Full=Yop proteins translocation protein B; | pCD1 | CDS | 37330 | 414 | + | 0.417874 | |
YPCD1.52 | putative type III secretion protein | SubName: Full=KIM5; SubName: Full=Putative type III secretion protein; SubName: Full=Putative type III secretion protein YscC; SubName: Full=Type III secretion outermembrane pore forming protein; SubName: Full=Type III secretion protein; SubName: Full=Yop proteins translocation protein C homolog; | pCD1 | CDS | 37749 | 1824 | + | 0.454496 | |
YPCD1.53 | putative type III secretion protein | SubName: Full=Putative type III secretion protein; SubName: Full=Putative type III secretion protein YscD; SubName: Full=Type III secretion protein; SubName: Full=Yop proteins translocation protein D homolog; | pCD1 | CDS | 39569 | 1260 | + | 0.46746 | |
YPCD1.54 | putative type III secretion protein | SubName: Full=Putative type III secretion protein; SubName: Full=Putative type III secretion protein YscE; SubName: Full=Type III secretion protein; SubName: Full=Yop proteins translocation protein E homolog; | pCD1 | CDS | 40825 | 201 | + | 0.422886 | |
YPCD1.55 | putative type III secretion protein | SubName: Full=Putative type III secretion protein; SubName: Full=Putative type III secretion protein YscF; SubName: Full=Type III secretion cytoplasmic protein; SubName: Full=Type III secretion protein; SubName: Full=Yop proteins translocation protein F homolog; | pCD1 | CDS | 41026 | 264 | + | 0.416667 | |
YPCD1.56 | putative type III secretion protein | SubName: Full=Putative type III secretion protein; SubName: Full=Putative type III secretion protein YscG; SubName: Full=Type III secretion protein; SubName: Full=Type III secretion spans bacterial envelope protein; SubName: Full=Yop proteins translocation protein G homolog; | pCD1 | CDS | 41291 | 348 | + | 0.439655 | |
YPCD1.57 | putative type III secretion protein | RecName: Full=Yop proteins translocation protein H; AltName: Full=Low calcium response locus protein P; | pCD1 | CDS | 41635 | 498 | + | 0.429719 | |
YPCD1.58 | putative type III secretion protein | RecName: Full=Yop proteins translocation protein I; AltName: Full=Low calcium response locus protein O; | pCD1 | CDS | 42133 | 348 | + | 0.468391 | |
YPCD1.59 | putative type III secretion lipoprotein | RecName: Full=Yop proteins translocation lipoprotein J; AltName: Full=Lipoprotein YlpB; AltName: Full=Low calcium response locus protein KA; Flags: Precursor; | pCD1 | CDS | 42487 | 735 | + | 0.428571 | |
YPCD1.60 | putative type III secretion protein | RecName: Full=Yop proteins translocation protein K; AltName: Full=Low calcium response locus protein KB; | pCD1 | CDS | 43221 | 630 | + | 0.485714 | |
YPCD1.61 | putative type III secretion protein | RecName: Full=Yop proteins translocation protein L; AltName: Full=Low calcium response locus protein KC; | pCD1 | CDS | 43796 | 666 | + | 0.448949 | |
YPCD1.62 | putative type III secretion regulatory protein | RecName: Full=Yop proteins translocation protein M; AltName: Full=Low calcium response locus protein Q; | pCD1 | CDS | 44686 | 348 | + | 0.479885 | |
YPCD1.63 | putative transposase ORFA | RecName: Full=Low calcium response locus protein S; | pCD1 | CDS | 45581 | 267 | + | 0.434457 | |
YPCD1.64 | putative transposase ORFB | RecName: Full=Low calcium response locus protein T; | pCD1 | CDS | 45871 | 435 | + | 0.455172 | |
YPCD1.65 | putative transposase | SubName: Full=Putative transposase; | pCD1 | CDS | 46302 | 309 | + | 0.459547 | |
YPCD1.66 | SubName: Full=YPCD1.66 protein; Flags: Fragment; | pCD1 | CDS | 46623 | 279 | + | 0.473118 | ||
YPCD1.67c | putative protein-tyrosine phosphatase Yop effector | SubName: Full=Targeted effector protein; SubName: Full=Type III secretion injected virulence protein; SubName: Full=Uncharacterized protein; SubName: Full=YopH; | pCD1 | CDS | 47122 | 1407 | - | 0.474058 | |
YPCD1.68c | SubName: Full=O68; SubName: Full=Uncharacterized protein; SubName: Full=YPCD1.68c protein; | pCD1 | CDS | 48811 | 207 | - | 0.608696 | ||
YPCD1.69 | SubName: Full=YPCD1.69 protein; Flags: Fragment; | pCD1 | CDS | 49044 | 582 | + | 0.493127 | ||
YPCD1.70c | SubName: Full=YPCD1.70c protein; Flags: Fragment; | pCD1 | CDS | 49657 | 99 | - | 0.40404 | ||
YPCD1.71c | putative targeted effector protein | SubName: Full=Putative targeted effector protein; | pCD1 | CDS | 50211 | 867 | - | 0.344867 | |
YPCD1.72c | putative targeted effector protein kinase | RecName: Full=Protein kinase YpkA; Short=Protein kinase A; EC=2.7.11.1; AltName: Full=Targeted effector protein kinase; Flags: Precursor; | pCD1 | CDS | 51473 | 2199 | - | 0.481583 | |
YPCD1.73c | hypothetical protein YPCD1.73c | SubName: Full=Hypothetial protein; SubName: Full=Uncharacterized protein; | pCD1 | CDS | 53679 | 450 | - | 0.451111 | |
YPCD1.74c | SubName: Full=YPCD1.74c protein; Flags: Fragment; | pCD1 | CDS | 54368 | 117 | - | 0.470085 | ||
YPCD1.75c | SubName: Full=YPCD1.75c protein; Flags: Fragment; | pCD1 | CDS | 54541 | 153 | - | 0.509804 | ||
YPCD1.77c | putative replication initiation protein | SubName: Full=Putative replication initiation protein; SubName: Full=Replication protein; SubName: Full=Replication protein RepA-like protein; | pCD1 | CDS | 56291 | 867 | - | 0.542099 | |
YPCD1.78c | putative repA translation protein | SubName: Full=Putative repA translation protein; SubName: Full=RepA translation protein; | pCD1 | CDS | 57150 | 75 | - | 0.44 | |
YPCD1.79c | putative replication transcriptional regulator | SubName: Full=Putative replication transcriptional regulator; SubName: Full=Replication protein; SubName: Full=Replication protein RepB homolog; SubName: Full=Replication protein RepB-like protein; | pCD1 | CDS | 57466 | 255 | - | 0.423529 | |
YPCD1.81 | SubName: Full=YPCD1.81 protein; Flags: Fragment; | pCD1 | CDS | 58307 | 234 | + | 0.542735 | ||
YPCD1.82c | hypothetical protein YPCD1.82c | SubName: Full=Uncharacterized protein; | pCD1 | CDS | 58523 | 408 | - | 0.539216 | |
YPCD1.83c | hypothetical protein YPCD1.83c | SubName: Full=Uncharacterized protein; | pCD1 | CDS | 58954 | 324 | - | 0.487654 | |
YPCD1.84c | hypothetical protein YPCD1.84c | SubName: Full=Putative DNA helicase; SubName: Full=Uncharacterized protein; | pCD1 | CDS | 59443 | 492 | - | 0.554878 | |
YPCD1.85 | SubName: Full=YPCD1.85 protein; Flags: Fragment; | pCD1 | CDS | 59946 | 294 | + | 0.503401 | ||
YPCD1.89 | SubName: Full=Putative transposase homolog; SubName: Full=YPCD1.89 protein; | pCD1 | CDS | 62474 | 381 | + | 0.509186 | ||
YPCD1.90c | putative transposase | SubName: Full=Putative transposase; SubName: Full=Transposase (Tn1000) homolog; | pCD1 | CDS | 62851 | 2316 | - | 0.519862 | |
YPCD1.91 | putative resolvase | SubName: Full=Putative resolvase; SubName: Full=Resolvase; SubName: Full=Transposon gamma-delta resolvase (Transposon TN1000) homolog; | pCD1 | CDS | 65330 | 552 | + | 0.46558 | |
YPCD1.92 | hypothetical protein YPCD1.92 | SubName: Full=Uncharacterized protein; | pCD1 | CDS | 66503 | 330 | + | 0.281818 | |
YPCD1.93 | putative transposase | SubName: Full=Putative IS1617 transposase; SubName: Full=Putative transposase; SubName: Full=Transposase; | pCD1 | CDS | 66932 | 267 | + | 0.479401 | |
YPCD1.94 | putative transposase | SubName: Full=Putative transposase; | pCD1 | CDS | 67222 | 810 | + | 0.504938 | |
YPCD1.95c | putative yopH targeting protein | SubName: Full=Putative yopH targeting protein; SubName: Full=Putative yopH targeting protein SycH; SubName: Full=YopH chaperone; SubName: Full=YopH chaperone SycH protein homolog; | pCD1 | CDS | 68179 | 426 | - | 0.41784 | |
YPCD1.96c | putative transposase | SubName: Full=Putative transposase; | pCD1 | CDS | 68947 | 432 | - | 0.569444 | |
YPCD1.97c | putative transposase | SubName: Full=Putative transposase; | pCD1 | CDS | 69378 | 927 | - | 0.558792 |