Gene list
Applied filters:
Gene type: CDS
Gene type: CDS
Genomic element: pPBPR1
Number of genes found: 67
Hide UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Photobacterium profundum, ss9 | |||||||||
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Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | PBPRC0026 | putative partitioning protein A [Photobacterium profundum SS9] | SubName: Full=Putative partitioning protein A [Photobacterium profundum SS9]; | pPBPR1 | CDS | 33557 | 1191 | + | 0.398825 |
NA | PBPRC0065 | hypothetical protein [Photobacterium profundum SS9] | SubName: Full=Uncharacterized protein; | pPBPR1 | CDS | 77016 | 276 | + | 0.358696 |
NA | PBPRC0064 | hypothetical KrfA protein [Photobacterium profundum SS9] | SubName: Full=Hypothetical KrfA protein [Photobacterium profundum SS9]; | pPBPR1 | CDS | 75589 | 1014 | + | 0.440828 |
NA | PBPRC0024 | Predicted orf | SubName: Full=Predicted orf; | pPBPR1 | CDS | 30909 | 459 | - | 0.394336 |
NA | PBPRC0025 | putative antirestriction protein [Photobacterium profundum SS9] | SubName: Full=Putative antirestriction protein [Photobacterium profundum SS9]; | pPBPR1 | CDS | 31938 | 978 | - | 0.45092 |
NA | PBPRC0021 | hypothetical protein [Photobacterium profundum SS9] | SubName: Full=Uncharacterized protein; | pPBPR1 | CDS | 22182 | 1161 | - | 0.541774 |
NA | PBPRC0009 | Predicted orf | SubName: Full=Predicted orf; | pPBPR1 | CDS | 7943 | 417 | - | 0.489209 |
NA | PBPRC0050 | putative transposase | SubName: Full=Putative transposase; | pPBPR1 | CDS | 61899 | 645 | - | 0.44186 |
NA | PBPRC0049 | gi|11344926|gb|AAG34553.1| putative cyclopropane fatty acid synthase [Photobacterium profundum] | SubName: Full=Gi|11344926|gb|AAG34553.1| putative cyclopropane fatty acid synthase [Photobacterium profundum]; | pPBPR1 | CDS | 61198 | 615 | + | 0.42439 |
NA | PBPRC0041 | unknown protein [Photobacterium profundum SS9] | SubName: Full=Uncharacterized protein; | pPBPR1 | CDS | 51581 | 288 | + | 0.40625 |
NA | PBPRC0016 | putative sex pilus assembly and mating pair (TraG) [Photobacterium profundum SS9] | SubName: Full=Putative sex pilus assembly and mating pair (TraG) [Photobacterium profundum SS9]; | pPBPR1 | CDS | 15384 | 2835 | + | 0.507584 |
NA | PBPRC0027 | putative partitioning protein B | SubName: Full=Putative partitioning protein B; | pPBPR1 | CDS | 34750 | 1086 | + | 0.387661 |
NA | PBPRC0028 | hypothetical protein [Photobacterium profundum SS9] | SubName: Full=Uncharacterized protein; | pPBPR1 | CDS | 36432 | 348 | - | 0.554598 |
NA | PBPRC0005 | hypothetical protein [Photobacterium profundum SS9] | SubName: Full=Uncharacterized protein; | pPBPR1 | CDS | 2651 | 735 | + | 0.533333 |
NA | PBPRC0047 | Predicted orf | SubName: Full=Predicted orf; | pPBPR1 | CDS | 59286 | 309 | - | 0.417476 |
NA | PBPRC0042 | hypothetical protein [Photobacterium profundum SS9] | SubName: Full=Uncharacterized protein; | pPBPR1 | CDS | 51938 | 954 | - | 0.385744 |
NA | PBPRC0044 | putative helicase[Photobacterium profundum SS9] | SubName: Full=Putative helicase[Photobacterium profundum SS9]; | pPBPR1 | CDS | 56032 | 1719 | + | 0.344386 |
NA | PBPRC0067 | hypothetical protein [Photobacterium profundum SS9] | SubName: Full=Uncharacterized protein; | pPBPR1 | CDS | 79373 | 285 | + | 0.340351 |
NA | PBPRC0066 | hypothetical protein [Photobacterium profundum SS9] | SubName: Full=Uncharacterized protein; | pPBPR1 | CDS | 77981 | 894 | - | 0.47651 |
NA | PBPRC0037 | conserved hypothetical protein [Photobacterium profundum SS9] | SubName: Full=Uncharacterized protein; | pPBPR1 | CDS | 46753 | 1026 | - | 0.41423 |
NA | PBPRC0058 | hypothetical protein [Photobacterium profundum SS9] | SubName: Full=Uncharacterized protein; | pPBPR1 | CDS | 70380 | 1035 | - | 0.330435 |
NA | PBPRC0004 | hypothetical sex pilus assembly and synthesis protein (TraE) | SubName: Full=Hypothetical sex pilus assembly and synthesis protein (TraE); | pPBPR1 | CDS | 2007 | 648 | + | 0.507716 |
NA | PBPRC0001 | putative sex pilus assembly and synthesis protein (TraY) [Photobacterium profundum SS9] | SubName: Full=Putative sex pilus assembly and synthesis protein (TraY) [Photobacterium profundum SS9]; | pPBPR1 | CDS | 317 | 393 | + | 0.323155 |
NA | PBPRC0018 | hypothetical protein [Photobacterium profundum SS9] | SubName: Full=Uncharacterized protein; | pPBPR1 | CDS | 18779 | 372 | + | 0.513441 |
NA | PBPRC0017 | hypothetical protein [Photobacterium profundum SS9] | SubName: Full=Uncharacterized protein; | pPBPR1 | CDS | 18222 | 480 | - | 0.429167 |
NA | PBPRC0013 | conserved hypothetical protein [Photobacterium profundum SS9] | SubName: Full=Uncharacterized protein; | pPBPR1 | CDS | 11009 | 1803 | + | 0.499168 |
NA | PBPRC0046 | Predicted orf | SubName: Full=Predicted orf; | pPBPR1 | CDS | 58879 | 264 | + | 0.344697 |
NA | PBPRC0007 | hypothetical protein [Photobacterium profundum SS9] | SubName: Full=Uncharacterized protein; | pPBPR1 | CDS | 4860 | 396 | + | 0.525253 |
NA | PBPRC0057 | hypothetical protein [Photobacterium profundum SS9] | SubName: Full=Uncharacterized protein; | pPBPR1 | CDS | 68271 | 1749 | + | 0.292739 |
NA | PBPRC0032 | Predicted orf | SubName: Full=Predicted orf; | pPBPR1 | CDS | 39908 | 294 | - | 0.540816 |
NA | PBPRC0020 | hypothetical protein [Photobacterium profundum SS9] | SubName: Full=Uncharacterized protein; | pPBPR1 | CDS | 21670 | 495 | + | 0.454545 |
NA | PBPRC0060 | hypothetical protein [Photobacterium profundum SS9] | SubName: Full=Uncharacterized protein; | pPBPR1 | CDS | 72364 | 414 | + | 0.311594 |
NA | PBPRC0035 | hypothetical protein [Photobacterium profundum SS9] | SubName: Full=Uncharacterized protein; | pPBPR1 | CDS | 44619 | 1428 | - | 0.416667 |
NA | PBPRC0033 | hypothetical inner membrane protein [Photobacterium profundum SS9] | SubName: Full=Hypothetical inner membrane protein [Photobacterium profundum SS9]; | pPBPR1 | CDS | 43366 | 309 | - | 0.423948 |
NA | PBPRC0051 | Predicted orf | SubName: Full=Predicted orf; | pPBPR1 | CDS | 63001 | 306 | - | 0.388889 |
NA | PBPRC0014 | hypothetical sex pilus assembly and synthesis protein (TraF) [Photobacterium profundum SS9] | SubName: Full=Hypothetical sex pilus assembly and synthesis protein (TraF) [Photobacterium profundum SS9]; | pPBPR1 | CDS | 12808 | 792 | + | 0.518939 |
NA | PBPRC0002 | hypothetical protein [Photobacterium profundum SS9] | SubName: Full=Uncharacterized protein; | pPBPR1 | CDS | 917 | 285 | - | 0.396491 |
NA | PBPRC0038 | hypothetical protein [Photobacterium profundum SS9] | SubName: Full=Uncharacterized protein; | pPBPR1 | CDS | 47819 | 417 | - | 0.386091 |
NA | PBPRC0056 | Predicted orf | SubName: Full=Predicted orf; | pPBPR1 | CDS | 67811 | 324 | - | 0.422839 |
NA | PBPRC0043 | putative exonuclease[Photobacterium profundum SS9] | SubName: Full=Putative exonuclease[Photobacterium profundum SS9]; | pPBPR1 | CDS | 54028 | 1998 | + | 0.386386 |
NA | PBPRC0039 | hypothetical protein [Photobacterium profundum SS9] | SubName: Full=Uncharacterized protein; | pPBPR1 | CDS | 48251 | 549 | - | 0.398907 |
NA | PBPRC0055 | putative transposase [Photobacterium profundum SS9] | SubName: Full=Putative transposase [Photobacterium profundum SS9]; | pPBPR1 | CDS | 66987 | 492 | + | 0.457317 |
NA | PBPRC0011 | putative sex pilus assembly and synthesis protein (TraU) [Photobacterium profundum SS9] | SubName: Full=Putative sex pilus assembly and synthesis protein (TraU) [Photobacterium profundum SS9]; | pPBPR1 | CDS | 9108 | 1005 | + | 0.510448 |
NA | PBPRC0015 | putative Thiol-disulfide isomerase [Photobacterium profundum SS9] | SubName: Full=Putative Thiol-disulfide isomerase [Photobacterium profundum SS9]; | pPBPR1 | CDS | 13611 | 441 | + | 0.498866 |
NA | PBPRC0062 | conserved hypothetical protein [Photobacterium profundum SS9] | SubName: Full=Uncharacterized protein; | pPBPR1 | CDS | 74859 | 261 | + | 0.402299 |
NA | PBPRC0031 | hypothetical protein [Photobacterium profundum SS9] | SubName: Full=Uncharacterized protein; | pPBPR1 | CDS | 38487 | 582 | - | 0.412371 |
NA | PBPRC0019 | putative conjugative transfer protein (TraD) [Photobacterium profundum SS9] | SubName: Full=Putative conjugative transfer protein (TraD) [Photobacterium profundum SS9]; | pPBPR1 | CDS | 19147 | 2106 | + | 0.48623 |
NA | PBPRC0052 | Putative site-specific recombinase, resolvase family [Photobacterium profundum] | SubName: Full=Putative site-specific recombinase, resolvase family [Photobacterium profundum]; | pPBPR1 | CDS | 63869 | 633 | + | 0.406003 |
NA | PBPRC0048 | hypothetical protein [Photobacterium profundum SS9] | SubName: Full=Uncharacterized protein; | pPBPR1 | CDS | 59613 | 360 | - | 0.358333 |
NA | PBPRC0054 | conserved protein of unknown functions [Photobacterium profundum SS9] | SubName: Full=Uncharacterized protein; | pPBPR1 | CDS | 65355 | 1026 | - | 0.308967 |
NA | PBPRC0059 | putative transposase [Photobacterium profundum SS9] | SubName: Full=Putative transposase [Photobacterium profundum SS9]; | pPBPR1 | CDS | 71507 | 738 | - | 0.471545 |
NA | PBPRC0022 | putative DNA helicase (TraI) [Photobacterium profundum SS9] | SubName: Full=Putative DNA helicase (TraI) [Photobacterium profundum SS9]; | pPBPR1 | CDS | 23492 | 5943 | + | 0.502272 |
NA | PBPRC0034 | conserved hypothetical protein [Photobacterium profundum SS9] | RecName: Full=CRISPR-associated endonuclease Cas1; EC=3.1.-.-; | pPBPR1 | CDS | 43683 | 921 | - | 0.449511 |
NA | PBPRC0063 | stabilization protein ParE, putative [Photobacterium profundum SS9] | SubName: Full=Stabilization protein ParE, putative [Photobacterium profundum SS9]; | pPBPR1 | CDS | 75119 | 303 | + | 0.429043 |
NA | PBPRC0010 | hypothetical sex pilus assembly and synthesis protein (TraW) [Photobacterium profundum SS9] | SubName: Full=Hypothetical sex pilus assembly and synthesis protein (TraW) [Photobacterium profundum SS9]; | pPBPR1 | CDS | 8406 | 699 | + | 0.496423 |
NA | PBPRC0023 | hypothetical protein [Photobacterium profundum SS9] | SubName: Full=Uncharacterized protein; | pPBPR1 | CDS | 29463 | 387 | - | 0.405685 |
NA | PBPRC0036 | hypothetical protein [Photobacterium profundum SS9] | SubName: Full=Uncharacterized protein; | pPBPR1 | CDS | 46078 | 663 | - | 0.408748 |
NA | PBPRC0053 | putative transposase [Photobacterium profundum SS9] | SubName: Full=Putative transposase [Photobacterium profundum SS9]; | pPBPR1 | CDS | 64523 | 396 | + | 0.494949 |
NA | PBPRC0061 | hypothetical protein [Photobacterium profundum SS9] | SubName: Full=Uncharacterized protein; | pPBPR1 | CDS | 73628 | 651 | + | 0.356375 |
NA | PBPRC0012 | hypothetical conjugative transfer protein trbC [Photobacterium profundum SS9] | SubName: Full=Hypothetical conjugative transfer protein trbC [Photobacterium profundum SS9]; | pPBPR1 | CDS | 10303 | 705 | + | 0.50922 |
NA | PBPRC0006 | putative sex pilus assembly and synthesis protein (TraB) [Photobacterium profundum SS9] | SubName: Full=Putative sex pilus assembly and synthesis protein (TraB) [Photobacterium profundum SS9]; | pPBPR1 | CDS | 3379 | 1470 | + | 0.520408 |
NA | PBPRC0030 | hypothetical protein [Photobacterium profundum SS9] | SubName: Full=Uncharacterized protein; | pPBPR1 | CDS | 37791 | 495 | - | 0.442424 |
NA | PBPRC0029 | putative Endonuclease I [Photobacterium profundum SS9] | SubName: Full=Putative Endonuclease I [Photobacterium profundum SS9]; | pPBPR1 | CDS | 36895 | 849 | - | 0.479388 |
NA | PBPRC0045 | hypothetical protein [Photobacterium profundum SS9] | SubName: Full=Uncharacterized protein; | pPBPR1 | CDS | 57943 | 297 | - | 0.427609 |
NA | PBPRC0003 | hypothetical protein [Photobacterium profundum SS9] | SubName: Full=Uncharacterized protein; | pPBPR1 | CDS | 1503 | 273 | + | 0.564103 |
NA | PBPRC0008 | putative sex pilus assembly and synthesis protein (TraC) [Photobacterium profundum SS9] | SubName: Full=Putative sex pilus assembly and synthesis protein (TraC) [Photobacterium profundum SS9]; | pPBPR1 | CDS | 5259 | 2589 | + | 0.504442 |
NA | PBPRC0040 | conserved hypothetical protein [Photobacterium profundum SS9] | SubName: Full=Uncharacterized protein; | pPBPR1 | CDS | 48841 | 2478 | - | 0.409201 |