Gene list
Applied filters:
Gene type: CDS
Gene type: CDS
Genomic element: R64
Number of genes found: 135
Hide UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Salmonella typhimurium | |||||||||
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Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | SubName: Full=PilVD C-terminal segment; Flags: Fragment; | R64 | CDS | 104255 | 288 | + | 0.413194 | ||
NA | SubName: Full=PilVA C-terminal segment; Flags: Fragment; | R64 | CDS | 104569 | 225 | + | 0.497778 | ||
NA | SubName: Full=PilVB C-terminal segment; SubName: Full=Prepilin, shufflon protein B; Flags: Fragment; | R64 | CDS | 103468 | 252 | - | 0.484127 | ||
NA | R64 | CDS | 104790 | 342 | - | 0.44152 | |||
NA | SubName: Full=PilVB C-terminal segment; SubName: Full=Prepilin, shufflon protein B; Flags: Fragment; | R64 | CDS | 103221 | 246 | + | 0.402439 | ||
NA | SubName: Full=PilVC C-terminal segment; Flags: Fragment; | R64 | CDS | 103969 | 252 | - | 0.444444 | ||
NA | SubName: Full=PilVC C-terminal segment; Flags: Fragment; | R64 | CDS | 103754 | 219 | + | 0.424658 | ||
ard | SubName: Full=Antirestriction protein; | R64 | CDS | 61426 | 501 | + | 0.548902 | ||
arsB | RecName: Full=Arsenical pump membrane protein; | R64 | CDS | 22582 | 1290 | + | 0.535659 | ||
arsC | SubName: Full=Arsenate reductase; | R64 | CDS | 23884 | 426 | + | 0.485915 | ||
arsD | SubName: Full=Arsenic metallochaperone; | R64 | CDS | 3162 | 363 | + | 0.493113 | ||
arsH | SubName: Full=Arsenical resistance protein ArsH; | R64 | CDS | 29179 | 651 | - | 0.488479 | ||
arsR | SubName: Full=DNA-binding transcriptional repressor ArsR; | R64 | CDS | 2761 | 354 | + | 0.488701 | ||
excA | SubName: Full=Surface exclusion protein; | R64 | CDS | 76983 | 444 | - | 0.407658 | ||
excB | surface exclusion protein | SubName: Full=Surface exclusion protein; | R64 | CDS | 76983 | 663 | - | 0.38914 | |
ibfA | SubName: Full=IbfA protein; | R64 | CDS | 32653 | 1557 | - | 0.354528 | ||
impA | RecName: Full=Protein ImpA; EC=3.4.21.-; Contains: RecName: Full=Protein ImpA; | R64 | CDS | 49501 | 438 | - | 0.557078 | ||
impB | SubName: Full=DNA polymerase V subunit ImpB; SubName: Full=ImpB; SubName: Full=Uncharacterized protein; | R64 | CDS | 48227 | 1275 | - | 0.515294 | ||
impC | SubName: Full=DNA damage-inducible protein I; SubName: Full=DinI-like family protein; SubName: Full=ImpC; | R64 | CDS | 49935 | 249 | - | 0.514056 | ||
kor | SubName: Full=Plasmid maintenance protein; | R64 | CDS | 38386 | 231 | - | 0.549784 | ||
mck | RecName: Full=tRNA(fMet)-specific endonuclease VapC; EC=3.1.-.-; AltName: Full=RNase VapC; AltName: Full=Toxin VapC; | R64 | CDS | 37973 | 417 | - | 0.592326 | ||
nikA | SubName: Full=NikA; SubName: Full=NikA oriT-specific DNA binding protein; SubName: Full=NikA oriT-specific DNA-binding protein; SubName: Full=NikB; | R64 | CDS | 67048 | 333 | + | 0.423423 | ||
nikB | SubName: Full=NikB relaxase; SubName: Full=Relaxase; SubName: Full=TrbD; | R64 | CDS | 67391 | 2700 | + | 0.521481 | ||
nuc | EDTA-resistant nuclease | SubName: Full=EDTA-resistant nuclease; SubName: Full=Nuclease; | R64 | CDS | 95430 | 552 | - | 0.496377 | |
parA | SubName: Full=Type I plasmid partitioning protein; | R64 | CDS | 46836 | 981 | + | 0.441386 | ||
parB | SubName: Full=Plasmid partitioning and stability protein StbB; SubName: Full=Plasmid stability protein; SubName: Full=Type I plasmid partitioning protein; | R64 | CDS | 47809 | 417 | + | 0.429257 | ||
pifA | SubName: Full=Phage inhibition protein; | R64 | CDS | 40141 | 2226 | - | 0.484277 | ||
pilI | SubName: Full=PilI protein; SubName: Full=PilI type IV pilus biogenesis protein; | R64 | CDS | 116827 | 255 | - | 0.580392 | ||
pilJ | SubName: Full=PilJ type IV pilus biogenesis protein; | R64 | CDS | 116332 | 453 | - | 0.355408 | ||
pilK | SubName: Full=PilK type IV pilus biogenesis protein; | R64 | CDS | 115692 | 591 | - | 0.368866 | ||
pilL | lipoprotein | SubName: Full=Lipoprotein; SubName: Full=PilL lipoprotein; | R64 | CDS | 114591 | 1068 | - | 0.5 | |
pilM | SubName: Full=PilM; SubName: Full=PilM protein; SubName: Full=PilM type IV pilus biogenesis protein; | R64 | CDS | 114154 | 438 | - | 0.486301 | ||
pilN | lipoprotein | SubName: Full=Lipoprotein; SubName: Full=PilN; SubName: Full=PilN type IV pilus secretin; | R64 | CDS | 112458 | 1683 | - | 0.492573 | |
pilO | SubName: Full=PilO type IV pilus biogenesis protein; | R64 | CDS | 111170 | 1296 | - | 0.486883 | ||
pilP | SubName: Full=PilP protein; SubName: Full=PilP type IV pilus biogenesis protein; SubName: Full=Type IV pilus biogenesis protein PilP; | R64 | CDS | 110731 | 453 | - | 0.439294 | ||
pilQ | nucleotide-binding protein | SubName: Full=ATP-binding protein; SubName: Full=PilQ; SubName: Full=PilQ type IV pilus ATPase; | R64 | CDS | 109167 | 1554 | - | 0.469755 | |
pilR | integral membrane protein | SubName: Full=Integral membrane protein; SubName: Full=PilR; SubName: Full=PilR integral membrane protein; | R64 | CDS | 108057 | 1098 | - | 0.443534 | |
pilS | typeIV prepilin | SubName: Full=PilS type IV prepilin; Flags: Precursor; | R64 | CDS | 107425 | 615 | - | 0.435772 | |
pilT | SubName: Full=PilT; SubName: Full=PilT lytic transglycosidase; SubName: Full=PilT lytic transglycosilase; SubName: Full=PilT protein; | R64 | CDS | 106855 | 561 | - | 0.434938 | ||
pilU | prepilin peptidase | SubName: Full=Pepilin peptidase; SubName: Full=PilU prepilin peptidase; SubName: Full=Prepilin peptidase; | R64 | CDS | 106214 | 657 | - | 0.420091 | |
pilV | typeIV prepilin | SubName: Full=PilVA typeIV preadhesin; SubName: Full=Type IV preadhesin; | R64 | CDS | 104790 | 1425 | - | 0.470175 | |
pndA | post-segregation killing protein | SubName: Full=Post-segregation killing protein; | R64 | CDS | 75000 | 153 | + | 0.470588 | |
pndC | post-segregation killing protein | SubName: Full=Post-segregation killing protein; | R64 | CDS | 74942 | 204 | + | 0.485294 | |
psiA | SubName: Full=Plasmid SOS inhibition protein A; SubName: Full=Plasmid SOS inhibition protein PsiA; | R64 | CDS | 59651 | 720 | + | 0.5625 | ||
psiB | SubName: Full=Plasmid SOS inhibition protein B; SubName: Full=PsiB; | R64 | CDS | 59220 | 435 | + | 0.544828 | ||
rci | shufflon-specific DNA reconbinase | SubName: Full=Shufflon-specific DNA recombinase; SubName: Full=Shufflon-specific DNA reconbinase; SubName: Full=Shufflon-specific recombinase; | R64 | CDS | 102002 | 1155 | - | 0.489177 | |
repC | SubName: Full=Replication initiation protein; | R64 | CDS | 42667 | 795 | - | 0.620126 | ||
repY | SubName: Full=Regulator of repZ expression; SubName: Full=RepY; | R64 | CDS | 378 | 90 | + | 0.5 | ||
repZ | SubName: Full=Replication initiation protein; | R64 | CDS | 455 | 1032 | + | 0.562016 | ||
resA | SubName: Full=Phage integrase family protein; SubName: Full=Resolvase; | R64 | CDS | 44425 | 780 | + | 0.589744 | ||
sogL | DNA primase | SubName: Full=SogL DNA primase; | R64 | CDS | 91573 | 3768 | - | 0.54379 | |
sogS | SubName: Full=SogS transfer protein; | R64 | CDS | 91573 | 2535 | - | 0.527022 | ||
ssb | RecName: Full=Single-stranded DNA-binding protein; | R64 | CDS | 56330 | 528 | + | 0.602273 | ||
strA | SubName: Full=Aminoglycoside 3-phosphotransferase; SubName: Full=Aminoglycoside phosphotransferase; SubName: Full=StrA streptomycin APH(3)-Ib phosphotransferase; SubName: Full=Streptomycin phosphotransferase; SubName: Full=Streptomycin phosphotransferase A, StrA; SubName: Full=Streptomycin phosphotransferase StrA; SubName: Full=Streptomycin resistance protein; SubName: Full=Streptomycin resistance protein A; | R64 | CDS | 18301 | 804 | + | 0.562189 | ||
strB | SubName: Full=Aminoglycoside phosphotransferase; SubName: Full=Aminoglycoside resistance protein StrB; SubName: Full=Aminoglycoside/hydroxyurea antibiotic resistance kinase; SubName: Full=StrB streptomycin APH(6)-Id phosphotransferase; SubName: Full=Streptomycin phosphotransferase; SubName: Full=Streptomycin phosphotransferase B, StrB; SubName: Full=Streptomycin resistance protein B; | R64 | CDS | 19104 | 837 | + | 0.55914 | ||
tetA | SubName: Full=TetA; SubName: Full=Tetracycline antiporter protein; SubName: Full=Tetracycline resistance protein; | R64 | CDS | 11510 | 1206 | - | 0.433665 | ||
tetC | SubName: Full=Transcriptional regulator of tet operon; | R64 | CDS | 10804 | 594 | + | 0.326599 | ||
tetD | SubName: Full=Transcriptional regulator of tet operon; | R64 | CDS | 10300 | 417 | - | 0.359712 | ||
tetR | SubName: Full=Tetracycline repressor protein TetR; SubName: Full=Tetracycline resistance protein TetR; | R64 | CDS | 12797 | 624 | + | 0.402244 | ||
tnpA | SubName: Full=Transposase_7; | R64 | CDS | 4218 | 2886 | - | 0.619543 | ||
tnpL | SubName: Full=TnpA; SubName: Full=Transposase_11; | R64 | CDS | 16807 | 1209 | - | 0.450786 | ||
tnpR | SubName: Full=Putative transposase; SubName: Full=Transposase_11; | R64 | CDS | 9082 | 1209 | + | 0.448304 | ||
traA | SubName: Full=TraA protein; | R64 | CDS | 119952 | 177 | - | 0.485876 | ||
traB | SubName: Full=Transcription termination factor NusG; | R64 | CDS | 118866 | 534 | - | 0.432584 | ||
traC | SubName: Full=Putative positive regulator; | R64 | CDS | 117929 | 684 | - | 0.504386 | ||
traD | SubName: Full=TraD protein; | R64 | CDS | 117349 | 567 | - | 0.430335 | ||
traE | SubName: Full=TraE; SubName: Full=TraE protein; | R64 | CDS | 101027 | 825 | - | 0.436364 | ||
traF | SubName: Full=TraF; SubName: Full=TraF protein; | R64 | CDS | 99740 | 1203 | - | 0.47049 | ||
traG | SubName: Full=Histidine phosphatase domain protein; SubName: Full=TraG; | R64 | CDS | 99096 | 585 | - | 0.403419 | ||
traH | lipoprotein | SubName: Full=IncI1 conjugal transfer protein TraH; SubName: Full=TraH; SubName: Full=TraH lipoprotein; | R64 | CDS | 98243 | 459 | - | 0.509804 | |
traI | lipoprotein | SubName: Full=TraI; SubName: Full=TraI lipoprotein; | R64 | CDS | 97428 | 819 | - | 0.526252 | |
traJ | nucleotide-binding protein | SubName: Full=IncI1 conjugal transfer protein TraJ; SubName: Full=TraJ; SubName: Full=TraJ transfer ATPase; | R64 | CDS | 96283 | 1149 | - | 0.51436 | |
traK | SubName: Full=TraK transfer protein; | R64 | CDS | 95996 | 291 | - | 0.491409 | ||
traL | SubName: Full=IncI1 conjugal transfer protein TraL; SubName: Full=TraL; SubName: Full=TraL transfer protein; | R64 | CDS | 91208 | 348 | - | 0.528736 | ||
traM | SubName: Full=IcmL family protein; SubName: Full=TraM; | R64 | CDS | 90519 | 693 | - | 0.507937 | ||
traN | SubName: Full=TraN; SubName: Full=TraN transfer protein; | R64 | CDS | 89525 | 984 | - | 0.54065 | ||
traO | SubName: Full=TraO; SubName: Full=TraO transfer protein; | R64 | CDS | 88233 | 1290 | - | 0.510078 | ||
traP | SubName: Full=IncI1 conjugal transfer protein TraP; SubName: Full=TraP; SubName: Full=TraP transfer protein; | R64 | CDS | 87529 | 705 | - | 0.506383 | ||
traQ | SubName: Full=TraQ; SubName: Full=TraQ transfer protein; SubName: Full=Uncharacterized protein; | R64 | CDS | 87002 | 528 | - | 0.530303 | ||
traR | SubName: Full=TraR; SubName: Full=TraR transfer protein; | R64 | CDS | 86547 | 405 | - | 0.511111 | ||
traS | SubName: Full=TraS; SubName: Full=TraS transfer protein; | R64 | CDS | 86295 | 189 | - | 0.486772 | ||
traT | SubName: Full=TraT; SubName: Full=TraT transfer protein; | R64 | CDS | 85511 | 801 | - | 0.508115 | ||
traU | nucleotide-binding protein | SubName: Full=TraU; SubName: Full=TraU nucleotide-binding protein; | R64 | CDS | 82377 | 3045 | - | 0.507718 | |
traV | SubName: Full=TraV transfer protein; | R64 | CDS | 81763 | 615 | - | 0.515447 | ||
traW | lipoprotein | SubName: Full=TraW lipoprotein; | R64 | CDS | 80594 | 1203 | - | 0.527016 | |
traX | SubName: Full=TraX; SubName: Full=TraX transfer protein; | R64 | CDS | 79981 | 585 | - | 0.48547 | ||
traY | integral membrane protein | SubName: Full=TraY integral membrane protein; | R64 | CDS | 77716 | 2238 | - | 0.466935 | |
trbA | SubName: Full=IncI1 conjugal transfer protein TrbA; SubName: Full=TrbA; SubName: Full=TrbA transfer protein; SubName: Full=Uncharacterized protein; | R64 | CDS | 73500 | 1209 | - | 0.511993 | ||
trbB | SubName: Full=Protein disulfide isomerase; SubName: Full=Protein-disulfide isomerase; SubName: Full=TrbB; | R64 | CDS | 72411 | 1071 | - | 0.512605 | ||
trbC | SubName: Full=TrbC; SubName: Full=TrbC transfer protein; SubName: Full=Type IV secretory pathway, VirD4 components; | R64 | CDS | 70127 | 2292 | - | 0.498691 | ||
yahA | SubName: Full=Transposase_8; | R64 | CDS | 7883 | 276 | + | 0.423913 | ||
ybdA | SubName: Full=Putative bacterial regulatory protein of the arsR family; SubName: Full=Regulator of tet operon (HTH_ARSR); SubName: Full=Transcriptional regulator of tet operon; | R64 | CDS | 13398 | 687 | - | 0.416303 | ||
ybeA | SubName: Full=YbeA protein; | R64 | CDS | 14092 | 489 | - | 0.376278 | ||
ybeB | SubName: Full=JemB; SubName: Full=YbeB protein; | R64 | CDS | 14471 | 321 | - | 0.34891 | ||
ybfA | SubName: Full=JemA; SubName: Full=Sodium/glutamate symporter; | R64 | CDS | 15236 | 1206 | + | 0.394693 | ||
ycaA | SubName: Full=IS2 OrfA protein; SubName: Full=IS2 repressor TnpA; SubName: Full=Transposase_8; | R64 | CDS | 20376 | 366 | - | 0.530055 | ||
yceA | SubName: Full=Sortase and related acyltransferases; | R64 | CDS | 24344 | 537 | - | 0.497207 | ||
ycfA | SubName: Full=YcfA protein; | R64 | CDS | 25092 | 813 | + | 0.482165 | ||
ycfB | SubName: Full=Transcription regulator; | R64 | CDS | 25967 | 369 | + | 0.441734 | ||
ycgA | SubName: Full=Arsenite-activating ATPase; | R64 | CDS | 26409 | 1758 | - | 0.534699 | ||
yciA | SubName: Full=Arsenic metallochaperone; | R64 | CDS | 28187 | 363 | - | 0.523416 | ||
yciB | SubName: Full=RNA polymerase sigma factor SigZ; | R64 | CDS | 28625 | 546 | - | 0.487179 | ||
ycjA | SubName: Full=Transcriptional regulator of ars operon; SubName: Full=Transcriptional regulator, ArsR family; | R64 | CDS | 29990 | 324 | - | 0.432099 | ||
ydaA | SubName: Full=Putative permease; | R64 | CDS | 30418 | 1134 | + | 0.440917 | ||
ydbA | SubName: Full=Conjugation repressor protein; SubName: Full=Uncharacterized protein; | R64 | CDS | 31844 | 618 | - | 0.47411 | ||
ydeA | SubName: Full=YdeA protein; | R64 | CDS | 34472 | 591 | - | 0.651438 | ||
ydfA | SubName: Full=YdfA protein; | R64 | CDS | 35062 | 258 | - | 0.515504 | ||
ydfB | SubName: Full=ABC transporter nucleotide-binding protein; SubName: Full=Uncharacterized protein; | R64 | CDS | 35673 | 2139 | + | 0.499766 | ||
ydiA | SubName: Full=YdiA protein; | R64 | CDS | 38912 | 291 | + | 0.457045 | ||
ydjA | SubName: Full=Predicted nucleotide-binding protein; SubName: Full=Uncharacterized protein; | R64 | CDS | 39192 | 900 | + | 0.472222 | ||
yedA | SubName: Full=YedA protein; | R64 | CDS | 43971 | 453 | + | 0.567329 | ||
yefA | SubName: Full=Putative plasmid stability protein; SubName: Full=Type II bacterial partitioning protein; | R64 | CDS | 45350 | 678 | + | 0.424779 | ||
yegA | SubName: Full=Uncharacterized protein; SubName: Full=YegA protein; | R64 | CDS | 46114 | 309 | + | 0.446602 | ||
yfaA | SubName: Full=YfaA protein; | R64 | CDS | 50294 | 270 | + | 0.625926 | ||
yfaB | SubName: Full=DUF1281 family protein; | R64 | CDS | 50577 | 927 | + | 0.546926 | ||
yfbA | SubName: Full=YfbA protein; | R64 | CDS | 51500 | 312 | + | 0.628205 | ||
yfbB | SubName: Full=DNA adenine methyltransferase YhdJ; EC=2.1.1.72; SubName: Full=Putative DNA methyltransferase; SubName: Full=Putative mrthylase; | R64 | CDS | 51888 | 684 | + | 0.554094 | ||
yfcA | SubName: Full=Uncharacterized protein; SubName: Full=YfcA protein; | R64 | CDS | 52572 | 222 | + | 0.531532 | ||
yfcB | SubName: Full=DUF1380 family protein; SubName: Full=Uncharacterized protein; | R64 | CDS | 52805 | 435 | + | 0.565517 | ||
yfdA | SubName: Full=YfdA protein; | R64 | CDS | 53290 | 771 | + | 0.607004 | ||
yfeA | SubName: Full=DUF1472 family protein; | R64 | CDS | 54035 | 471 | + | 0.619958 | ||
yfeB | SubName: Full=Antirestriction protein; SubName: Full=Putative antirestriction protein; | R64 | CDS | 54478 | 426 | + | 0.532864 | ||
yfeC | SubName: Full=YfeC protein; | R64 | CDS | 54950 | 423 | + | 0.562648 | ||
yffA | SubName: Full=YffA protein; | R64 | CDS | 55369 | 192 | + | 0.5 | ||
yffB | SubName: Full=Uncharacterized protein; SubName: Full=YffB protein; | R64 | CDS | 55631 | 348 | + | 0.655172 | ||
yfhA | SubName: Full=Type II bacterial partitioning protein; SubName: Full=Uncharacterized protein; | R64 | CDS | 57117 | 2049 | + | 0.584675 | ||
ygaA | SubName: Full=Uncharacterized protein; SubName: Full=YgaA protein; | R64 | CDS | 60367 | 597 | + | 0.537688 | ||
ygbA | SubName: Full=DUF1472 family protein; | R64 | CDS | 61035 | 471 | + | 0.624204 | ||
ygcA | SubName: Full=Uncharacterized protein; SubName: Full=YdfA; SubName: Full=YgcA protein; | R64 | CDS | 62655 | 435 | + | 0.581609 | ||
ygdA | SubName: Full=Uncharacterized protein; SubName: Full=YdfB; SubName: Full=YgdA protein; | R64 | CDS | 63181 | 267 | + | 0.58427 | ||
ygdB | SubName: Full=Transposase_31; SubName: Full=Uncharacterized protein; | R64 | CDS | 63512 | 942 | + | 0.538217 | ||
ygeA | SubName: Full=Uncharacterized protein; SubName: Full=YgeA; SubName: Full=YgeA protein; | R64 | CDS | 64716 | 252 | - | 0.559524 | ||
ygfA | SubName: Full=YgfA protein; | R64 | CDS | 65087 | 336 | + | 0.592262 | ||
ygfB | SubName: Full=Uncharacterized protein; SubName: Full=YgfB protein; | R64 | CDS | 65547 | 849 | + | 0.51119 | ||
yggA | SubName: Full=Uncharacterized protein; SubName: Full=YggA protein; | R64 | CDS | 66480 | 336 | - | 0.425595 |