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2024-05-19 06:50:25

Gene list

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Organism: Escherichia coli, JEF100
Gene type: CDS

Number of genes found: 96

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Escherichia coli, JEF100
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA pCoo045 virK homologuepCoo CDS33083 951 - 0.410095
NA conserved hypothetical proteinpCoo CDS80409 270 + 0.622222
NA pCoo098 parA-like proteinpCoo CDS77420 633 + 0.467615
NA pCoo070 putative IS element proteinpCoo CDS55706 426 - 0.49061
NA pCoo082 group II intron-encoded reverse transcriptase/maturasepCoo CDS63307 1509 + 0.533466
NA pCoo038 prophage protein gp49pCoo CDS29673 312 + 0.455128
NA pCoo077 putative IS100 element ATP-binding proteinpCoo CDS58536 780 - 0.505128
NA pCoo092 conserved hypothetical proteinpCoo CDS72494 309 + 0.533981
NA pCoo022 IS element transposasepCoo CDS18228 1572 + 0.571883
NA pCoo034 hypothetical proteinpCoo CDS26615 366 + 0.530055
NA pCoo099 conserved hypothetical proteinpCoo CDS78052 375 + 0.530667
NA pCoo095 PIN-domain containing proteinpCoo CDS74416 417 - 0.597122
NA pCoo081 transposase for insertion sequence element IS629 (contains group II intron)pCoo CDS62218 891 + 0.538721
NA pCoo055 putative AraC family regulatory proteinpCoo CDS41025 705 + 0.326241
NA pCoo087 hypothetical secreted proteinpCoo CDS68667 369 + 0.409214
NA pCoo046 glycosyl transferasepCoo CDS34038 1089 - 0.426079
NA pCoo091 immunity protein for colicin IbpCoo CDS71953 384 - 0.356771
NA pCoo048 conserved hypothetical proteinpCoo CDS36215 531 - 0.608286
NA pCoo078 putative IS100 transposasepCoo CDS59315 1023 - 0.528837
NA pCoo025 putative integral membrane proteinpCoo CDS21332 261 + 0.356322
NA pCoo021 IS element transposasepCoo CDS17861 348 + 0.563218
NA pCoo019 IS100 transposasepCoo CDS16196 1023 - 0.528837
NA pCoo069 putative IS element proteinpCoo CDS55359 351 - 0.524217
NA pCoo039 prophage protein gp48pCoo CDS29984 288 + 0.4375
NA pCoo073 conserved hypothetical proteinpCoo CDS57339 315 + 0.568254
NA pCoo089 AraC-family trancriptional regulatorpCoo CDS70651 861 - 0.321719
NA pCoo054 conserved hypothetical proteinpCoo CDS40097 681 - 0.311307
NA pCoo063 hypothetical proteinpCoo CDS49291 468 + 0.412393
NA pCoo016 transposase insD for insertion element IS2pCoo CDS14271 906 - 0.550773
NA pCoo005 hypothetical proteinpCoo CDS2884 699 + 0.439199
NA pCoo004 conserved hypothetical proteinpCoo CDS2662 195 + 0.497436
NA pCoo068 putative IS element transposasepCoo CDS53715 1614 - 0.54399
NA pCoo129 hypothetical proteinpCoo CDS97615 264 - 0.5
NA pCoo018 putative IS100 transposase ATP-binding proteinpCoo CDS15417 780 - 0.50641
NA pCoo003 conserved hypothetical proteinpCoo CDS2396 270 + 0.518519
NA pCoo066 IS element transposasepCoo CDS51895 1017 + 0.462144
NA pCoo023 hypothetical proteinpCoo CDS20406 294 - 0.527211
NA pCoo088 putative transposase for insertion sequence element IS186pCoo CDS69139 1197 - 0.503759
NA pCoo080 insertion element IS629 proteinpCoo CDS61895 327 + 0.544343
NA pCoo053 putative resolvasepCoo CDS39016 642 + 0.478193
NA pCoo049 conserved hypothetical proteinpCoo CDS36745 258 - 0.5
NA pCoo033 TraK-X deletion and fusion proteinpCoo CDS25775 597 + 0.547739
NA pCoo093 conserved hypothetical proteinpCoo CDS72820 507 - 0.64497
NA pCoo085 IS1-family insertion element proteinpCoo CDS67684 273 + 0.509158
NA pCoo024 conserved hypothetical proteinpCoo CDS20779 258 + 0.468992
NA pCoo096 conserved hypothetical proteinpCoo CDS75579 453 + 0.562914
NA pCoo097 resolvasepCoo CDS76033 786 + 0.59542
aphA pCoo011 aminoglycoside 3'-phosphotransferase (Kanamycin resistance-artifical insertion)pCoo CDS6817 786 - 0.450382
ccdA pCoo050 CcdA antitoxin proteinpCoo CDS37447 219 + 0.515982
ccdB pCoo051 cytotoxic protein CcdBpCoo CDS37667 306 + 0.529412
cooA pCoo013 CS1 fimbrial subunit A precursorpCoo CDS9280 516 + 0.45155
cooB pCoo009 CS1 fimbrial subunit B precursorpCoo CDS6261 717 + 0.368201
cooC pCoo014 CooC precursor (Usher protein)pCoo CDS9877 2619 + 0.383734
cooD pCoo015 CooD precursorpCoo CDS12492 1092 + 0.386447
def pCoo040 peptide deformylasepCoo CDS30648 510 + 0.462745
eatA pCoo056 secreted autotransporter serine protease EatApCoo CDS42072 4095 - 0.406838
hok pCoo075 post-segregation killing proteinpCoo CDS57861 162 + 0.518519
insA pCoo061 insertion element IS1 protein InsApCoo CDS48447 276 + 0.518116
insA pCoo059 insertion element IS1 protein InsApCoo CDS47359 276 - 0.532609
insB pCoo058 insertion element IS1 protein InsBpCoo CDS46937 504 - 0.535714
mok pCoo074 modulator of hok proteinpCoo CDS57803 216 + 0.50463
msbB pCoo044 lipid A biosynthesis (kdo)2-(lauroyl)-lipid iva acyltransferasepCoo CDS32074 945 - 0.42963
parA pCoo064 partition protein ParApCoo CDS50147 981 + 0.457696
parB pCoo065 partition protein ParBpCoo CDS51130 423 + 0.439716
pilI pCoo123 PilI proteinpCoo CDS94395 255 - 0.580392
pilJ pCoo122 PilJ proteinpCoo CDS93900 453 - 0.350993
pilK pCoo121 PilK proteinpCoo CDS93260 591 - 0.370558
pilL pCoo120 lipoprotein (PilL protein)pCoo CDS92159 1068 - 0.500936
pilM pCoo119 PilM proteinpCoo CDS91722 438 - 0.486301
pilN pCoo118 lipoprotein (PilN protein)pCoo CDS90026 1683 - 0.492573
pilO pCoo117 PilO proteinpCoo CDS88738 1296 - 0.487654
pilP pCoo116 PilP proteinpCoo CDS88299 453 - 0.439294
pilQ pCoo115 nucleotide-binding proteinpCoo CDS86735 1554 - 0.469755
pilR pCoo114 integral membrane proteinpCoo CDS85625 1098 - 0.443534
pilS pCoo113 type IV prepilinpCoo CDS84993 615 - 0.437398
pilT pCoo112 putative transglycosylase PilTpCoo CDS84423 561 - 0.434938
pilU pCoo111 prepilin peptidasepCoo CDS83782 657 - 0.420091
pilV pCoo110 typeIV prepilin (truncated)pCoo CDS83024 759 - 0.480896
repA pCoo002 replication initiation proteinpCoo CDS456 1032 + 0.555233
repA1 pCoo036 replication initiation protein RepApCoo CDS27845 858 + 0.562937
repA2 pCoo035 replication regulatory protein RepA2pCoo CDS27285 258 + 0.484496
repA6 pCoo035a positive regulator of repfic repa1 expression (repa1 leader peptide)pCoo CDS27778 75 + 0.466667
repY pCoo001 RepY proteinpCoo CDS379 90 + 0.488889
resD pCoo052 putative resolvasepCoo CDS38000 687 + 0.569141
shf pCoo047 putative polysaccharide deacetylasepCoo CDS35129 822 - 0.391728
stbA pCoo100 plasmid stability protein StbApCoo CDS78665 975 + 0.458462
stbB pCoo101 plasmid stability protein StbBpCoo CDS79643 393 + 0.501272
traA pCoo128 TraA proteinpCoo CDS97410 237 - 0.434599
traA pCoo030 fimbrial protein precursorpCoo CDS24536 360 + 0.525
traB pCoo127 TraB proteinpCoo CDS96435 534 - 0.432584
traC pCoo126 TraC proteinpCoo CDS95497 684 - 0.504386
traD pCoo125 TraD proteinpCoo CDS94917 567 - 0.430335
traE pCoo032 TraE proteinpCoo CDS25222 564 + 0.47695
traJ pCoo029 TraJ proteinpCoo CDS23775 282 + 0.37234
traL pCoo031 TraL proteinpCoo CDS24897 306 + 0.473856
traM pCoo028 TraM proteinpCoo CDS22910 387 + 0.395349