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2024-05-02 13:55:35

Gene list

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Organism: Salmonella typhimurium, G8430

Number of genes found: 185

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Salmonella typhimurium, G8430
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA pU302L repeat_region1603 19 + 0.421053
NA pU302L repeat_region52822 14 - 0.5
NA hypothetical proteinSubName: Full=Uncharacterized protein; pU302L CDS39214 1023 - 0.540567
NA hypothetical proteinSubName: Full=Uncharacterized protein; pU302L CDS80591 294 - 0.585034
NA conserved hypothetical proteinSubName: Full=Uncharacterized protein; pU302L CDS7603 828 + 0.60628
NA conserved hypothetical proteinSubName: Full=Uncharacterized protein; pU302L CDS5862 312 + 0.63141
NA conserved hypothetical proteinSubName: Full=Uncharacterized protein; pU302L CDS9319 423 + 0.560284
NA pU302L repeat_region65477 12 - 0.583333
NA pU302L repeat_region1374 19 + 0.473684
NA pU302L repeat_region10109 639 + 0.618153
NA pU302L repeat_region21660 14 + 0.5
NA hypothetical proteinSubName: Full=Uncharacterized protein; pU302L CDS8546 171 - 0.631579
NA pU302S rep_origin750 5 + 0.8
NA pU302L misc_feature27687 384 - 0.572917
NA pU302L repeat_region19800 14 + 0.5
NA hypothetical proteinSubName: Full=Uncharacterized protein; pU302L CDS42855 3825 + 0.413595
NA pU302L repeat_region79575 14 + 0.5
NA hypothetical proteinSubName: Full=Uncharacterized protein; pU302L CDS55195 279 + 0.598566
NA pU302L repeat_region4169 388 + 0.528351
NA pU302L repeat_region20606 14 + 0.5
NA conserved hypothetical proteinSubName: Full=Uncharacterized protein; pU302L CDS55856 228 + 0.530702
NA conserved hypothetical proteinRecName: Full=UPF0401 protein YubL; pU302L CDS14667 240 + 0.516667
NA pU302L repeat_region41853 672 + 0.58631
NA pU302L repeat_region13431 638 + 0.619122
NA conserved hypothetical proteinSubName: Full=Uncharacterized protein; pU302L CDS49085 1134 + 0.520282
NA conserved hypothetical proteinSubName: Full=Uncharacterized protein; pU302L CDS9738 192 + 0.510417
NA pU302L repeat_region478 20 + 0.4
NA hypothetical proteinSubName: Full=Uncharacterized protein; pU302L CDS48232 687 + 0.518195
NA conserved hypothetical proteinSubName: Full=Uncharacterized protein; pU302L CDS4939 927 + 0.549083
NA pU302L repeat_region74878 22 + 0.409091
NA pU302S misc_feature924 118 + 0.516949
NA pU302L misc_feature26149 717 - 0.67643
NA conserved hypothetical proteinSubName: Full=PecM; SubName: Full=Uncharacterized protein; pU302L CDS70940 861 + 0.593496
NA conserved hypothetical proteinSubName: Full=Uncharacterized protein; pU302L CDS10967 231 + 0.571429
NA conserved hypothetical proteinSubName: Full=Uncharacterized protein; pU302S CDS411 384 - 0.575521
NA putative RNAI pU302S misc_RNA225 104 - 0.5
NA conserved hypothetical proteinSubName: Full=DNA polymerase V subunit UmuC; SubName: Full=Uncharacterized protein; pU302L CDS36186 390 + 0.505128
NA pU302L repeat_region63321 18 + 0.5
NA pU302S misc_feature1855 148 + 0.47973
NA pU302L repeat_region1396 19 + 0.526316
NA conserved hypothetical proteinSubName: Full=Uncharacterized protein; pU302L CDS54617 543 + 0.569061
NA conserved hypothetical proteinSubName: Full=Uncharacterized protein; pU302L CDS56113 1158 + 0.607081
NA hypothetical proteinSubName: Full=Uncharacterized protein; pU302L CDS10135 234 - 0.709402
NA conserved hypothetical proteinSubName: Full=Uncharacterized protein; pU302L CDS31910 183 + 0.491803
NA pU302L repeat_region37490 18 - 0.5
NA pU302L repeat_region500 20 + 0.55
NA pU302L repeat_region53628 14 - 0.5
NA pU302S RBS1189 4 - 0.75
NA conserved hypothetical proteinSubName: Full=Uncharacterized protein; pU302L CDS11249 1362 + 0.571953
NA pU302L repeat_region18827 638 + 0.61442
NA pU302L repeat_region424 20 + 0.4
NA pU302L repeat_region76215 12 + 0.916667
NA conserved hypothetical proteinSubName: Full=TniA; SubName: Full=TniA transposase; SubName: Full=Transposase; SubName: Full=Uncharacterized protein; pU302L CDS70248 708 + 0.646893
NA pU302L repeat_region42572 119 + 0.386555
NA pU302L repeat_region77709 12 - 0.583333
NA IS1 transposaseSubName: Full=IS1 transposase; pU302L CDS38263 699 + 0.539342
NA hypothetical proteinSubName: Full=Uncharacterized protein; pU302L CDS79104 306 + 0.552288
NA pU302L repeat_region64071 18 + 0.388889
NA pU302L repeat_region1520 19 + 0.526316
NA pU302L repeat_region38208 18 + 0.5
NA pU302S misc_feature1211 241 + 0.481328
NA putative VagDRecName: Full=tRNA(fMet)-specific endonuclease VapC; EC=3.1.-.-; AltName: Full=RNase VapC; AltName: Full=Toxin VapC; pU302L CDS46724 417 - 0.616307
NA conserved hypothetical proteinSubName: Full=Uncharacterized protein; pU302L CDS62037 1311 + 0.345538
NA pU302L repeat_region84507 8 + 0.5
NA pU302L repeat_region74866 12 + 0.916667
NA conserved hypothetical proteinSubName: Full=Uncharacterized protein; pU302L CDS14965 1959 + 0.586013
NA pU302L repeat_region58896 25 + 0.48
NA pU302L rep_origin306 217 + 0.396313
NA conserved hypothetical proteinRecName: Full=Uncharacterized protein YuaZ; pU302L CDS4653 273 + 0.615385
NA pU302L repeat_region57304 25 + 0.48
NA conserved hypothetical proteinSubName: Full=TipA; SubName: Full=Uncharacterized protein; pU302L CDS60670 399 + 0.536341
NA pU302L repeat_region47396 136 + 0.330882
NA pU302L repeat_region80441 14 + 0.5
NA hypothetical proteinSubName: Full=Uncharacterized protein; pU302L CDS40221 1566 - 0.535121
NA hypothetical proteinSubName: Full=Uncharacterized protein; pU302L CDS47632 501 + 0.483034
NA conserved hypothetical proteinSubName: Full=Uncharacterized protein; SubName: Full=YfcA protein; pU302L CDS6934 222 + 0.536036
NA pU302L repeat_region38958 18 + 0.388889
NA pU302L repeat_region76193 22 + 0.409091
NA conserved hypothetical proteinSubName: Full=Uncharacterized protein; pU302L CDS13613 246 + 0.654472
NA pU302L repeat_region46716 672 + 0.589286
NA pU302L repeat_region74623 90 + 0.577778
NA conserved hypothetical proteinSubName: Full=EAL domain protein Urf2; SubName: Full=Uncharacterized protein; SubName: Full=Urf2; pU302L CDS69466 708 + 0.635593
NA IS1 transposaseSubName: Full=IS1 transposase; pU302L CDS63376 699 + 0.545064
NA pU302L repeat_region13377 90 + 0.455556
NA IS1 transposaseSubName: Full=IS1 transposase; pU302L CDS37200 699 - 0.539342
NA pU302L misc_feature50913 28 + 0.464286
NA putative VagDRecName: Full=tRNA(fMet)-specific endonuclease VapC; EC=3.1.-.-; AltName: Full=RNase VapC; AltName: Full=Toxin VapC; pU302L CDS41861 417 - 0.601918
NA conserved hypothetical proteinSubName: Full=Uncharacterized protein; pU302L CDS19485 288 + 0.510417
NA pU302L repeat_region84493 14 - 0.5
NA conserved hypothetical proteinSubName: Full=Uncharacterized protein; pU302L CDS7169 435 + 0.57931
NA pU302L repeat_region52814 8 + 0.5
NA pU302L repeat_region36740 18 - 0.388889
NA hypothetical proteinSubName: Full=Uncharacterized protein; pU302L CDS74137 336 + 0.666667
NA pU302L misc_feature29263 348 - 0.54023
NA hypothetical proteinSubName: Full=Uncharacterized protein; pU302L CDS50252 489 - 0.558282
NA putative RNAII pU302S misc_RNA223 527 + 0.540797
NA pU302L repeat_region83687 14 - 0.5
NA conserved hypothetical proteinSubName: Full=Uncharacterized protein; pU302L CDS6250 684 + 0.565789
NA pU302L repeat_region34998 84 + 0.321429
NA conserved hypothetical proteinSubName: Full=IS21 transposase IstA; SubName: Full=IS21-like transposase; SubName: Full=Uncharacterized protein; pU302L CDS35572 357 + 0.487395
NA pU302L repeat_region27672 14 - 0.5
NA hypothetical proteinSubName: Full=Uncharacterized protein; pU302L CDS73983 165 + 0.654545
NA pU302L repeat_region445 20 + 0.4
NA conserved hypothetical proteinSubName: Full=Uncharacterized protein; pU302L CDS18943 312 + 0.669872
NA putative transposaseSubName: Full=Putative transposase; SubName: Full=TnpA; pU302L CDS57385 1371 + 0.588621
NA pU302L repeat_region64172 12 - 0.583333
NA pU302L repeat_region1429 19 + 0.421053
NA pU302L repeat_region22466 14 + 0.5
NA pU302L misc_feature37509 375 + 0.562667
NA conserved hypothetical proteinSubName: Full=Uncharacterized protein; pU302L CDS12657 564 + 0.586879
NA pU302L rep_origin50924 203 + 0.497537
NA conserved hypothetical proteinSubName: Full=Uncharacterized protein; pU302L CDS35235 297 - 0.494949
NA pU302L repeat_region26866 14 - 0.5
NA conserved hypothetical proteinSubName: Full=Uncharacterized protein; pU302L CDS77888 1206 + 0.588723
NA pU302L repeat_region76404 12 - 0.583333
B'-insB B'-InsBSubName: Full=B-InsB; SubName: Full=IS1 transposase InsAB; SubName: Full=InsA; SubName: Full=InsB; SubName: Full=Insertion element is1 2/3 protein insb; SubName: Full=Insertion element is1 2/3 protein insb transposition protein; SubName: Full=TnpA; SubName: Full=Transposition protein; pU302L CDS63570 504 + 0.551587
B'-insB B'-InsBSubName: Full=B-InsB; SubName: Full=IS1 transposase orfB; SubName: Full=InsB; SubName: Full=InsB2; SubName: Full=Transposition protein; pU302L CDS38457 504 + 0.543651
B'-insB B'-InsBSubName: Full=B-InsB; SubName: Full=IS1 transposase orfB; SubName: Full=InsB; SubName: Full=InsB2; SubName: Full=Transposition protein; pU302L CDS36755 504 - 0.543651
IS1 pU302L repeat_region36740 768 - 0.53125
IS1 pU302L repeat_region38208 768 + 0.53125
IS1 pU302L repeat_region63321 768 + 0.536458
IS1294 pU302L repeat_region29612 1688 + 0.549171
IS186 pU302L repeat_region74878 1337 + 0.511593
IS26 pU302L repeat_region83687 820 - 0.52439
IS26 pU302L repeat_region26866 820 - 0.52439
IS26 pU302L repeat_region21660 820 + 0.52439
IS26 pU302L repeat_region19800 820 + 0.52439
IS26 pU302L repeat_region52822 820 - 0.52439
IS4321 pU302L repeat_region76404 1317 - 0.486712
IS4321 pU302L repeat_region64172 1317 - 0.486712
IS6100 pU302L repeat_region79575 880 + 0.605682
aac(3)-II aminoglycoside-(3)-N-acetyltransferase type IISubName: Full=Aminoglycoside-(3)-N-acetyltransferase type II; SubName: Full=Aminoglycoside-3-acetyltransferase; pU302L CDS53744 861 + 0.598142
aph(3')-I aminoglycoside 3'-phosphotransferase type ISubName: Full=Aminoglycoside (3) phosphotransferase AphA1a; SubName: Full=Aminoglycoside (3) phosphotransferase AphA1a or APH (3)-Ia; SubName: Full=Aminoglycoside 3-phosphotransferase; SubName: Full=Aminoglycoside 3-phosphotransferase type I; pU302L CDS20757 816 - 0.438726
aph(3')-I aminoglycoside 3'-phosphotransferase type 1SubName: Full=Aminoglycoside 3-phosphotransferase type 1; SubName: Full=Aminoglycoside phosphotransferase; SubName: Full=Aph; pU302S CDS2270 816 + 0.436274
blaTEM1 beta-lactamase TEM1SubName: Full=Beta-lactamase; SubName: Full=Beta-lactamase TEM-1; SubName: Full=Beta-lactamase TEM1; SubName: Full=Beta-lactamase tem; SubName: Full=Bla; SubName: Full=BlaTEM beta-lactamase; SubName: Full=TEM-1; SubName: Full=TEM-1, beta-lactamase; SubName: Full=TEM-type beta-lactamase; pU302L CDS59576 861 + 0.490128
blaTEM1 beta-lactamase TEM1SubName: Full=Beta-lactamase; SubName: Full=Beta-lactamase TEM-1; SubName: Full=Beta-lactamase TEM1; SubName: Full=Beta-lactamase tem; SubName: Full=Bla; SubName: Full=BlaTEM beta-lactamase; SubName: Full=TEM-1; SubName: Full=TEM-1, beta-lactamase; SubName: Full=TEM-type beta-lactamase; pU302L CDS28220 861 - 0.490128
ccdA CcdASubName: Full=CcdA; pU302L CDS51331 219 + 0.506849
ccdB CcdBSubName: Full=CcdB; pU302L CDS51551 306 + 0.503268
hok post-segregation killing proteinSubName: Full=Post-segregation killing protein; pU302L CDS18408 159 + 0.477987
insA InsASubName: Full=InsA; SubName: Full=Transposition protein; pU302L CDS63376 276 + 0.536232
insA InsASubName: Full=InsA; SubName: Full=InsA2; SubName: Full=Transposition protein; pU302L CDS37177 276 - 0.525362
insA InsASubName: Full=InsA; SubName: Full=InsA2; SubName: Full=Transposition protein; pU302L CDS38263 276 + 0.525362
int integraseSubName: Full=Integrase; SubName: Full=Integrase/recombinase; pU302L CDS32824 741 + 0.576248
klcA putative antirestriction proteinSubName: Full=Putative antirestriction protein; SubName: Full=YciB; pU302L CDS8847 426 + 0.551643
merA mercuric ion reductaseSubName: Full=Mercuric ion reductase; pU302L CDS67162 1695 + 0.651917
merC mercuric transport proteinSubName: Full=Mercuric transport protein; SubName: Full=Transmembrane protein; pU302L CDS66688 423 + 0.65721
merD mercuric resistance operon coregulatorSubName: Full=MerD; SubName: Full=Mercuric resistance operon coregulator; SubName: Full=Putative secondary regulatory protein; SubName: Full=Transcriptional regulator MerD; pU302L CDS68874 363 + 0.69697
merP periplasmic mercuric ion binding proteinSubName: Full=Periplasmic mercuric ion binding protein; pU302L CDS66377 276 + 0.626812
merR mercuric resistance operon regulatory proteinSubName: Full=Activator/represor of mer operon; SubName: Full=Mercuric resistance operon regulatory protein; pU302L CDS65507 435 - 0.595402
merT mercuric ion transport proteinSubName: Full=Mercuric ion transport protein; pU302L CDS66013 351 + 0.612536
mobA plasmid mobilization protein ASubName: Full=Plasmid mobilization protein A; pU302S CDS1461 324 + 0.512346
mok modulator of Hok proteinSubName: Full=Modulator of Hok protein; pU302L CDS18350 213 + 0.492958
mph(A) macrolide 2'-phosphotransferase ISubName: Full=Macrolide 2-phosphotransferase I; pU302L CDS82712 906 - 0.655629
mphR(A) MphR(A)SubName: Full=MphR(A); pU302L CDS80893 585 - 0.608547
mrx MrxSubName: Full=Mrx; pU302L CDS81477 1239 - 0.649718
pemI PemISubName: Full=PemI; SubName: Full=Stable inheritance regulatory protein PemI; SubName: Full=Stable plasmid inheritance protein I; pU302L CDS61161 258 + 0.534884
pemK PemKRecName: Full=mRNA interferase; EC=3.1.-.-; pU302L CDS61420 333 + 0.561562
psiA plasmid SOS inhibition protein ASubName: Full=Plasmid SOS inhibition protein A; pU302L CDS17409 720 + 0.601389
psiB plasmid SOS inhibition protein BSubName: Full=Plasmid SOS inhibition protein B; pU302L CDS16978 435 + 0.565517
putative IS element pU302L repeat_region57304 1617 + 0.58256
repA replication protein A of RepFIBSubName: Full=RepA2; SubName: Full=Replication protein A of RepFIB; pU302L CDS33849 978 - 0.523517
repC replication protein CSubName: Full=RepC; SubName: Full=RepC, replication initiation protein of IncQ plasmid RSF1010; SubName: Full=Replication protein C; SubName: Full=Replication protein C, RepC; pU302L CDS25311 852 - 0.660798
repE replication initiation protein ESubName: Full=Replication initiation protein E; pU302L CDS616 756 + 0.473545
resD resolvase protein DSubName: Full=Resolvase protein D; pU302L CDS51857 807 + 0.57373
rom probable RNAI modulator protein, RomSubName: Full=Probable RNAI modulator protein, Rom; pU302S CDS983 195 - 0.507692
sopA stabilization of plasmid protein ASubName: Full=Stabilization of plasmid protein A; pU302L CDS1950 1176 + 0.470238
sopB stabilization of plasmid protein BSubName: Full=Stabilization of plasmid protein B; pU302L CDS3125 972 + 0.459877
ssb single-strand DNA binding proteinRecName: Full=Single-stranded DNA-binding protein; pU302L CDS14090 528 + 0.583333
strA streptomycin resistance protein ASubName: Full=Aminoglycoside 3-phosphotransferase; SubName: Full=Aminoglycoside phosphotransferase; SubName: Full=StrA streptomycin APH(3)-Ib phosphotransferase; SubName: Full=Streptomycin phosphotransferase; SubName: Full=Streptomycin phosphotransferase A, StrA; SubName: Full=Streptomycin phosphotransferase StrA; SubName: Full=Streptomycin resistance protein; SubName: Full=Streptomycin resistance protein A; pU302L CDS23324 804 - 0.562189
strB streptomycin resistance protein BSubName: Full=Aminoglycoside phosphotransferase; SubName: Full=Aminoglycoside resistance protein StrB; SubName: Full=Aminoglycoside/hydroxyurea antibiotic resistance kinase; SubName: Full=StrB streptomycin APH(6)-Id phosphotransferase; SubName: Full=Streptomycin phosphotransferase; SubName: Full=Streptomycin phosphotransferase B, StrB; SubName: Full=Streptomycin resistance protein B; pU302L CDS22488 837 - 0.55914
sulII dihydropteroate synthetase type IISubName: Full=Dihydropteroate synthetase type II; SubName: Full=Sul2, sulfonamide-sensitive dihydropteroate synthetase; SubName: Full=Sulfonamide-insensitive dihydropteroate synthetase; pU302L CDS24188 816 - 0.606618
tetA tetracycline resistance protein ASubName: Full=TetA; SubName: Full=Tetracycline efflux protein; SubName: Full=Tetracycline resistance protein A; SubName: Full=Tetracycline resistance protein class A; SubName: Full=Tetracycline resistance protein, class A; pU302L CDS71832 1200 - 0.636667
tetR tetracycline resistance repressor proteinSubName: Full=Tetracycline repressor protein; SubName: Full=Tetracycline resistance repressor protein; pU302L CDS73137 651 + 0.639017
tnpAIS1294 IS1294 transposaseSubName: Full=IS1294 transposase; SubName: Full=TnpA10; SubName: Full=TnpA3; SubName: Full=TnpA7; SubName: Full=Transposase; pU302L CDS29930 1200 + 0.563333
tnpAIS186 IS186 transposaseSubName: Full=IS186 transposase; pU302L CDS74932 1113 + 0.519317
tnpAIS26 IS26 transposaseSubName: Full=IS26 transposase; SubName: Full=TnpA26; SubName: Full=Transposase; SubName: Full=Transposase TnpA; SubName: Full=Transposase of IS26; pU302L CDS83739 705 - 0.531915
tnpAIS26 IS26 transposaseSubName: Full=IS26 transposase; SubName: Full=TnpA26; SubName: Full=Transposase; SubName: Full=Transposase TnpA; SubName: Full=Transposase of IS26; pU302L CDS26918 705 - 0.531915
tnpAIS26 IS26 transposaseSubName: Full=IS26 transposase; SubName: Full=TnpA26; SubName: Full=Transposase; SubName: Full=Transposase TnpA; SubName: Full=Transposase of IS26; pU302L CDS52874 705 - 0.531915
tnpAIS26 IS26 transposaseSubName: Full=IS26 transposase; SubName: Full=TnpA26; SubName: Full=Transposase; SubName: Full=Transposase TnpA; SubName: Full=Transposase of IS26; pU302L CDS21723 705 + 0.531915
tnpAIS26 IS26 transposaseSubName: Full=IS26 transposase; SubName: Full=TnpA26; SubName: Full=Transposase; SubName: Full=Transposase TnpA; SubName: Full=Transposase of IS26; pU302L CDS19863 705 + 0.531915
tnpAIS4321 IS4321 transposaseSubName: Full=IS4321 transposase; SubName: Full=TnpA6; SubName: Full=Transposase; pU302L CDS64424 1005 - 0.490547
tnpAIS4321 IS4321 transposaseSubName: Full=IS4321 transposase; SubName: Full=TnpA6; SubName: Full=Transposase; pU302L CDS76656 1005 - 0.490547
tnpAIS6100 IS6100 transposaseSubName: Full=IS6100 transposase; SubName: Full=TnpA, transposase of IS6100; SubName: Full=Transposase; pU302L CDS79606 795 + 0.610063
vagC VagCSubName: Full=VagC; SubName: Full=Virulence associated gene C; pU302L CDS42274 231 - 0.562771
vagC VagCSubName: Full=Uncharacterized protein; SubName: Full=VagC; SubName: Full=VagC protein; SubName: Full=Virulence associated gene C; pU302L CDS47137 231 - 0.541126