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2024-05-04 13:43:16

Gene list

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Organism: Pseudomonas putida, NCIB 9816-4

Number of genes found: 92

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Pseudomonas putida, NCIB 9816-4
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA unknownSubName: Full=Uncharacterized protein; pDTG1 CDS71951 330 - 0.524242
NA putative zinc metalloproteaseSubName: Full=Putative zinc metalloprotease; pDTG1 CDS61376 786 - 0.549618
NA putative LysR-type transcriptional regulatorSubName: Full=Putative LysR-type transcriptional regulator; pDTG1 CDS35054 915 - 0.590164
NA unknownSubName: Full=Uncharacterized protein; pDTG1 CDS6148 498 + 0.534137
NA unknownSubName: Full=Uncharacterized protein; pDTG1 CDS59295 423 + 0.579196
NA putative regulatory proteinSubName: Full=Putative regulatory protein; pDTG1 CDS59741 330 + 0.578788
NA putative ligase fragmentSubName: Full=Putative ligase; pDTG1 CDS13407 477 - 0.580713
NA putative oxidoreductaseSubName: Full=Putative oxidoreductase; pDTG1 CDS36273 774 + 0.559432
NA unknownSubName: Full=Uncharacterized protein; pDTG1 CDS25553 408 - 0.568627
NA unknownSubName: Full=Uncharacterized protein; pDTG1 CDS32900 756 - 0.60582
NA putative transposaseSubName: Full=Putative transposase; pDTG1 CDS37747 708 - 0.611582
NA putative F plasmid gene 32-like proteinSubName: Full=Putative F plasmid gene 32-like protein; pDTG1 CDS58413 828 + 0.586957
NA unknownSubName: Full=Uncharacterized protein; pDTG1 CDS26237 390 - 0.653846
NA unknownSubName: Full=Uncharacterized protein; pDTG1 CDS2563 306 + 0.460784
NA putative regulatory proteinSubName: Full=Putative regulatory protein; pDTG1 CDS57278 405 + 0.530864
NA unknownSubName: Full=Uncharacterized protein; pDTG1 CDS82628 348 - 0.488506
NA unknownSubName: Full=Uncharacterized protein; pDTG1 CDS6804 804 + 0.567164
NA putative nucleaseSubName: Full=Putative nuclease; pDTG1 CDS71356 606 - 0.572607
NA unknownSubName: Full=Uncharacterized protein; pDTG1 CDS7740 333 + 0.570571
NA unknownSubName: Full=Uncharacterized protein; pDTG1 CDS56473 297 - 0.525253
NA pDTG1 misc_feature53008 438 + 0.504566
NA pDTG1 misc_feature53562 1029 + 0.576288
NA unknownSubName: Full=Uncharacterized protein; pDTG1 CDS60783 519 - 0.614644
NA unknownSubName: Full=Uncharacterized protein; pDTG1 CDS31583 912 - 0.546053
NA unknownSubName: Full=Uncharacterized protein; pDTG1 CDS8116 396 + 0.537879
NA unknownSubName: Full=Uncharacterized protein; pDTG1 CDS78256 213 - 0.544601
NA unknownSubName: Full=Uncharacterized protein; pDTG1 CDS12518 417 - 0.585132
NA unknownSubName: Full=Uncharacterized protein; pDTG1 CDS69263 582 + 0.541237
NA unknownSubName: Full=Uncharacterized protein; pDTG1 CDS5243 762 + 0.511811
NA putative nucleaseSubName: Full=Putative nuclease; pDTG1 CDS70173 639 - 0.539906
NA unknownSubName: Full=Uncharacterized protein; pDTG1 CDS32541 360 - 0.6
NA unknownSubName: Full=Uncharacterized protein; pDTG1 CDS54538 315 - 0.571429
NA putative oxidoreductaseSubName: Full=Putative oxidoreductase; pDTG1 CDS28834 1032 + 0.578488
NA unknownSubName: Full=Uncharacterized protein; pDTG1 CDS37120 144 + 0.506944
NA unknownSubName: Full=Uncharacterized protein; pDTG1 CDS77859 405 - 0.548148
NA unknownSubName: Full=Uncharacterized protein; pDTG1 CDS62179 1290 + 0.570543
NA unknownSubName: Full=Uncharacterized protein; pDTG1 CDS56766 303 - 0.554455
NA putative transposaseSubName: Full=Putative transposase; pDTG1 CDS38412 393 - 0.590331
NA unknownSubName: Full=Uncharacterized protein; pDTG1 CDS62689 720 - 0.563889
NA unknownSubName: Full=Uncharacterized protein; pDTG1 CDS34313 561 - 0.629234
NA unknownSubName: Full=Uncharacterized protein; pDTG1 CDS10754 408 + 0.546569
NA unknownSubName: Full=Uncharacterized protein; pDTG1 CDS70859 483 - 0.546584
NA putative oxidoreductaseSubName: Full=Putative oxidoreductase; pDTG1 CDS27386 1065 + 0.64507
gst putative gluthione S-transferaseSubName: Full=Putative gluthione S-transferase; pDTG1 CDS26757 618 + 0.613269
intA putative integraseSubName: Full=Putative integrase; pDTG1 CDS11158 1260 + 0.573016
mpfA putative mating pair formation proteinSubName: Full=MpfA; SubName: Full=Putative mating pair formation protein; pDTG1 CDS82150 462 - 0.528139
mpfB putative mating pair formation proteinSubName: Full=MpfB; SubName: Full=Putative mating pair formation protein; pDTG1 CDS81853 294 - 0.496599
mpfC putative mating pair formation proteinSubName: Full=Putative mating pair formation protein; pDTG1 CDS79182 2685 - 0.52365
mpfD putative mating pair formation proteinSubName: Full=Putative mating pair formation protein; pDTG1 CDS78496 690 - 0.547826
mpfE putative mating pair formation proteinSubName: Full=Putative mating pair formation protein; pDTG1 CDS77008 864 - 0.489583
mpfF putative mating pair formation proteinSubName: Full=Putative mating pair formation protein; pDTG1 CDS76339 666 - 0.509009
mpfG putative mating pair formation proteinSubName: Full=Putative mating pair formation protein; pDTG1 CDS75523 792 - 0.520202
mpfH putative mating pair formation proteinSubName: Full=Putative mating pair formation protein; pDTG1 CDS74237 1284 - 0.563084
mpfI putative mating pair formation proteinSubName: Full=Putative mating pair formation protein; pDTG1 CDS73199 1029 - 0.552964
mpfJ putative mating pair formation proteinSubName: Full=Putative mating pair formation protein; pDTG1 CDS72310 906 - 0.554084
nahAa naphthalene 1,2-dioxygenase reductase componentRecName: Full=Ferredoxin--NAD(P)(+) reductase (naphthalene dioxygenase ferredoxin-specific); EC=1.18.1.7; AltName: Full=Naphthalene 1,2-dioxygenase system ferredoxin--NAD(+) reductase component; pDTG1 CDS14536 987 + 0.559271
nahAb naphthalene 1,2-dioxygenase ferredoxin componentRecName: Full=Naphthalene 1,2-dioxygenase system ferredoxin subunit; pDTG1 CDS15666 315 + 0.507937
nahAc naphthalene 1,2-dioxygenase iron sulfur protein component large subunitSubName: Full=Naphthalene 1,2-dioxygenase iron sulfur protein component large subunit; pDTG1 CDS16051 1350 + 0.526667
nahAd naphthalene 1,2-dioxygenase iron sulfur protein component small subunitSubName: Full=Naphthalene 1,2-dioxygenase iron sulfur protein component small subunit; SubName: Full=Naphthalene 1,2-dioxygenase small oxygenase subunit; SubName: Full=Naphthalene-1,2-dioxygenase terminal oxygenase small subunit; pDTG1 CDS17415 585 + 0.502564
nahB 1,2-dihydroxy-1,2-dihydronaphthalenedehydrogenas eSubName: Full=1,2-dihydroxy-1,2-dihydronaphthalene dehydrogenase; pDTG1 CDS18068 780 + 0.524359
nahC 1,2-dihydroxynaphthalene dioxygenaseSubName: Full=1,2-dihydroxynaphthalene dioxygenase; pDTG1 CDS20373 909 + 0.542354
nahD 2-hydroxychromene-2-carboxylate isomeraseSubName: Full=2-hydroxychromene-2-carboxylate isomerase; pDTG1 CDS23479 600 + 0.476667
nahE trans-o-hydroxybenzylidenepyruvatehydratase-aldolaseSubName: Full=Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase; pDTG1 CDS22221 1005 + 0.546269
nahF salicyladehyde dehydrogenaseSubName: Full=Salicyladehyde dehydrogenase; pDTG1 CDS18894 1452 + 0.570248
nahG salicylate hydroxylaseSubName: Full=Salicylate hydroxylase; pDTG1 CDS50648 1317 - 0.637054
nahH catechol 2,3-dioxygenaseSubName: Full=Catechol 2,3-dioxygenase; pDTG1 CDS47691 924 - 0.546537
nahI 2-hydroxymuconic semialdehyde dehydrogenaseSubName: Full=2-hydroxymuconic semialdehyde dehydrogenase; pDTG1 CDS46196 1461 - 0.661191
nahJ 4-oxalocrotonate tautomeraseSubName: Full=4-oxalocrotonate tautomerase; pDTG1 CDS41478 192 - 0.604167
nahK 4-oxalocrotonate decarboxylaseSubName: Full=4-oxalocrotonate decarboxylase; pDTG1 CDS41724 795 - 0.645283
nahL 2-oxypent-4-pentenoate hydrataseSubName: Full=2-oxypent-4-pentenoate hydratase; pDTG1 CDS44510 786 - 0.642494
nahM 4-hydroxy-2-oxovalerate aldolaseRecName: Full=4-hydroxy-2-oxovalerate aldolase; Short=HOA; EC=4.1.3.39; AltName: Full=4-hydroxy-2-keto-pentanoic acid aldolase; AltName: Full=4-hydroxy-2-oxopentanoate aldolase; pDTG1 CDS42515 1041 - 0.654179
nahN 2-hydroxymuconic semialdehyde hydrolaseSubName: Full=2-hydroxymuconic semialdehyde hydrolase; pDTG1 CDS45307 882 - 0.684807
nahO acetaldehyde dehydrogenaseRecName: Full=Acetaldehyde dehydrogenase; EC=1.2.1.10; AltName: Full=Acetaldehyde dehydrogenase [acetylating]; pDTG1 CDS43567 924 - 0.656926
nahQ unknownSubName: Full=2-hydroxybenzalpyruvate aldolase; SubName: Full=Uncharacterized protein; pDTG1 CDS21537 636 + 0.501572
nahR NahRSubName: Full=NahR; pDTG1 CDS52104 903 + 0.609081
nahT ferredoxinSubName: Full=Ferredoxin; pDTG1 CDS48635 318 - 0.562893
nahY methyl-accepting chemotaxis proteinSubName: Full=Methyl-accepting chemotaxis protein; pDTG1 CDS39625 1617 - 0.519481
parA ParASubName: Full=ParA; pDTG1 CDS513 768 + 0.536458
parB ParBSubName: Full=ParB; pDTG1 CDS1294 927 + 0.538296
parR ParRSubName: Full=ParR; pDTG1 CDS2217 342 + 0.546784
rep putative replication proteinSubName: Full=Putative replication protein; pDTG1 CDS4634 570 + 0.540351
res1 putative resolvaseSubName: Full=Putative resolvase; pDTG1 CDS3557 630 + 0.547619
res2 putative resolvaseSubName: Full=Putative resolvase; pDTG1 CDS24488 474 - 0.628692
ruvA putative ultraviolet light resistance protein ASubName: Full=Putative ultraviolet light resistance protein A; pDTG1 CDS55492 396 - 0.560606
ruvB1 putative ultraviolet light resistance protein BSubName: Full=Putative ultraviolet light resistance protein B; pDTG1 CDS8508 1365 - 0.561905
ruvB2 putative ultraviolet light resistance protein BSubName: Full=Putative ultraviolet light resistance protein B; pDTG1 CDS54934 540 - 0.553704
ssb putative truncated single strand binding proteinRecName: Full=Single-stranded DNA-binding protein; Short=SSB; pDTG1 CDS57733 486 + 0.565844
tnpA transposaseSubName: Full=Transposase; pDTG1 CDS49434 981 + 0.589195
traA putative TraA proteinSubName: Full=Putative TraA protein; pDTG1 CDS64289 393 + 0.536896
traB putative TraB proteinSubName: Full=Putative TraB protein; pDTG1 CDS64674 1557 + 0.554913
traC putative TraC proteinSubName: Full=Putative TraC protein; pDTG1 CDS66241 2946 + 0.555329
traD putative TraD proteinSubName: Full=Putative TraD protein; pDTG1 CDS63405 456 - 0.524123