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2024-05-07 08:16:32

Gene list

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Organism: Oligotropha carboxidovorans, OM5 = DSM 1227

Number of genes found: 139

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Oligotropha carboxidovorans, OM5 = DSM 1227
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA nuclease pHCG3 CDS106960 375 - 0.648
NA hypothetical protein pHCG3 CDS4616 477 + 0.668763
NA hypothetical protein pHCG3 CDS96579 2010 + 0.654229
NA conserved hypothetical protein pHCG3 CDS101133 732 + 0.681694
NA hypothetical protein pHCG3 CDS22643 762 + 0.7021
NA transposase ISC1190 pHCG3 CDS95417 903 - 0.609081
NA transketolase pHCG3 CDS43442 1749 + 0.652373
NA hypothetical protein pHCG3 CDS19262 420 + 0.564286
NA conserved hypothetical protein pHCG3 CDS100101 372 + 0.604839
NA hypothetical protein pHCG3 CDS98669 477 + 0.641509
NA sedoheptulose 7-phosphate isomerase pHCG3 CDS71662 693 + 0.598846
NA hypothetical protein pHCG3 CDS88465 558 + 0.603943
NA hypothetical protein pHCG3 CDS94786 351 - 0.672365
NA methyl-transferase pHCG3 CDS9687 405 + 0.562963
NA hypothetical protein pHCG3 CDS19588 459 - 0.592593
NA levanfructo-transferase precursor pHCG3 CDS10091 312 + 0.580128
NA kinesin like protein pHCG3 CDS18011 504 + 0.555556
NA hypothetical conserved protein pHCG3 CDS86483 1089 + 0.655647
NA hydrolase of HAD-superfamily pHCG3 CDS7875 711 - 0.589311
NA probable exonuclease pHCG3 CDS10569 312 + 0.644231
NA probable integrase pHCG3 CDS3804 801 - 0.721598
NA hypothetical protein pHCG3 CDS2199 477 - 0.633124
NA hypothetical protein pHCG3 CDS105516 354 + 0.618644
NA periplasmic protein pHCG3 CDS18198 978 - 0.56544
NA hydrogenase-3 accessory protein pHCG3 CDS55021 780 - 0.598718
NA hypothetical protein pHCG3 CDS12007 504 + 0.59127
NA hypothetical protein pHCG3 CDS106380 399 - 0.586466
NA hypothetical conserved protein pHCG3 CDS6022 585 + 0.65641
NA nickel responsive regulator protein pHCG3 CDS76414 456 - 0.629386
NA hypothetical protein pHCG3 CDS81955 810 - 0.641975
NA hypothetical conserved protein pHCG3 CDS11332 576 - 0.631944
NA hypothetical protein pHCG3 CDS1 339 - 0.587021
NA hypothetical protein pHCG3 CDS12485 828 + 0.631643
NA probable adhesin pHCG3 CDS116252 3579 - 0.590388
NA terminase-like protein pHCG3 CDS115916 315 - 0.584127
NA hypothetical protein pHCG3 CDS87851 603 + 0.590381
NA putative outer membrane receptor pHCG3 CDS77653 1779 + 0.618887
NA hypothetical protein pHCG3 CDS5160 780 + 0.701282
NA putative methylase protein pHCG3 CDS89632 4653 + 0.627982
NA ribulose-phosphate-3-epimerase pHCG3 CDS51463 609 + 0.605911
NA hypothetical conserved protein pHCG3 CDS85759 327 - 0.584098
NA transposase B pHCG3 CDS83785 726 + 0.599174
NA hypothetical protein pHCG3 CDS88949 582 + 0.642612
NA S-layer RTX protein pHCG3 CDS16872 468 - 0.581197
NA hypothetical protein pHCG3 CDS75594 780 + 0.64359
NA hypothetical protein pHCG3 CDS100522 657 + 0.70624
NA hypothetical protein pHCG3 CDS94289 312 - 0.621795
NA hypothetical protein pHCG3 CDS87575 393 - 0.628499
NA legumin precursor pHCG3 CDS8635 444 + 0.587838
NA hypothetical protein pHCG3 CDS23367 1476 + 0.665989
NA hypothetical protein pHCG3 CDS107344 381 + 0.608924
NA glyceraldehyde-3-phosphate dehydrogenase pHCG3 CDS45192 1008 + 0.597222
NA hypothetical protein pHCG3 CDS99199 819 + 0.634921
afgP anti-freeze glycopeptide AfgP pHCG3 CDS15413 930 + 0.544086
ardC putative ardC protein pHCG3 CDS103921 930 + 0.589247
cbbA fructose-1,6-bisphosphate aldolase pHCG3 CDS47630 873 + 0.611684
cbbF fructose-1,6-bisphosphatase pHCG3 CDS41202 1038 + 0.627168
cbbK phosphoglycerate-kinase pHCG3 CDS46403 1002 + 0.616766
cbbL rubisco large subunit pHCG3 CDS48561 1461 + 0.607118
cbbP phosphoribulokinase pHCG3 CDS42318 813 + 0.596556
cbbR rubisco-operon transcriptional regulator CbbR pHCG3 CDS40144 882 - 0.604308
cbbS rubisco small subunit pHCG3 CDS50134 330 + 0.593939
cbbX probable CbbX rubisco expressions-protein pHCG3 CDS50868 525 + 0.552381
cbbY CbbY-protein pHCG3 CDS52955 519 + 0.591522
cbbZ phosphoglycolate phosphatase pHCG3 CDS52236 555 + 0.610811
coxB pHCG3 RBS25459 6 + 0.666667
coxB CoxB pHCG3 CDS25470 1008 + 0.5625
coxC CoxC pHCG3 CDS27015 1209 + 0.55914
coxC pHCG3 RBS27001 5 + 0.6
coxD pHCG3 RBS32248 7 + 0.285714
coxD CoxD pHCG3 CDS32259 888 + 0.554054
coxE CoxE pHCG3 CDS33148 1200 + 0.595
coxE pHCG3 RBS33132 6 + 0.666667
coxF pHCG3 RBS34338 5 + 0.6
coxF CoxF pHCG3 CDS34351 843 + 0.570581
coxG CoxG pHCG3 CDS35193 618 + 0.533981
coxG pHCG3 RBS35181 5 + 0.4
coxH CoxH pHCG3 CDS36235 1203 + 0.544472
coxI CoxI pHCG3 CDS37876 993 + 0.521652
coxI pHCG3 RBS37865 4 + 0.5
coxK CoxK pHCG3 CDS39117 891 - 0.628507
coxK pHCG3 RBS40015 6 - 0.666667
coxL pHCG3 RBS29761 7 + 0.714286
coxL CO-dehydrogenase large chain (CoxL) pHCG3 CDS29775 2430 + 0.565432
coxM pHCG3 RBS28381 7 + 0.857143
coxM CO-dehydrogenase medium chain (CoxM) pHCG3 CDS28393 867 + 0.594002
coxS pHCG3 RBS29266 7 + 0.714286
coxS CO-dehydrogenase small chain (CoxS) pHCG3 CDS29278 501 + 0.562874
dnaA3 DNA-polymerase III-alpha chain pHCG3 CDS24839 339 + 0.640118
dnaA3 pHCG3 RBS24828 4 + 0.5
dnaB replicative DNA helicase (DnaB) pHCG3 CDS101969 1569 - 0.602294
fixI nitrogen fixing protein FixI pHCG3 CDS79628 2247 - 0.662216
fixI FixP3 cytochrome c-oxidase membrane anchored subunit pHCG3 CDS82986 315 - 0.634921
hoxA regulator of NtrC-family pHCG3 CDS53519 1326 - 0.598039
hoxB [NiFe] hydrogenase-like protein small subunit pHCG3 CDS65665 777 - 0.644788
hoxC uptake hydrogenase pHCG3 CDS56134 924 - 0.616883
hoxL pHCG3 RBS62909 4 - 0.75
hoxL HoxL pHCG3 CDS61086 1821 - 0.611203
hoxM hydrogenase expression-formation protein HoxM pHCG3 CDS59469 618 - 0.624595
hoxS hydrogenase small subunit (HoxS) pHCG3 CDS62921 1083 - 0.630656
hoxV HoxV pHCG3 CDS64214 1455 - 0.639175
hoxZ HoxZ pHCG3 CDS60332 744 - 0.584677
hoxZ pHCG3 RBS61079 4 - 1
hupG hydrogenase-related protein O pHCG3 CDS58750 384 - 0.609375
hupH hydrogenase expression-formation protein HupH pHCG3 CDS57902 834 - 0.643885
hupJ HupJ pHCG3 CDS57054 588 - 0.598639
hupT hydrogen uptake histidine kinase pHCG3 CDS66672 1434 - 0.595537
hypB HypB like protein pHCG3 CDS74998 648 + 0.609568
hypD HypD-like protein pHCG3 CDS72771 714 + 0.584034
hypE HypE protein pHCG3 CDS73838 711 + 0.618847
hypF [NiFe] hydrogenase maturation protein HypF pHCG3 CDS69005 2364 + 0.639594
lasI autoinducer synthetase protein SolI pHCG3 CDS13794 675 - 0.56
raiR transcriptional-activation protein RaiR pHCG3 CDS13342 501 - 0.572854
repA replication protein A pHCG3 CDS28 798 + 0.58396
repB replication protein B pHCG3 CDS822 1056 + 0.609848
repC replication protein C pHCG3 CDS2541 1185 + 0.611814
rhiR regulation protein RhiR pHCG3 CDS14787 459 - 0.553377
rspD rhizobiocin secretional protein RspD pHCG3 CDS20008 1107 + 0.578139
rspE rhizobiocin secretional protein RspE pHCG3 CDS21078 1344 + 0.560268
traA TraA pHCG3 CDS110206 3366 + 0.632799
traB probable TraB pHCG3 CDS114100 1152 + 0.654514
traC conjugal transfer protein TraC pHCG3 CDS109741 342 - 0.631579
traD probable TraD pHCG3 CDS109521 351 - 0.649573
traF probable TraF pHCG3 CDS113586 513 + 0.647173
traG probable TraG pHCG3 CDS107624 1881 - 0.624668
traH TraH pHCG3 CDS115259 603 + 0.597015
traI probable conjugal transfer protein TraI pHCG3 CDS131637 567 - 0.643739
traM probable TraM pHCG3 CDS120505 327 + 0.544343
traR probable TraR pHCG3 CDS120849 720 - 0.515278
trbB VirB11-like protein pHCG3 CDS130660 963 - 0.63136
trbC probable TrbC pHCG3 CDS130305 366 - 0.644809
trbD probable TrbD pHCG3 CDS130013 300 - 0.63
trbE probable TrbE pHCG3 CDS127566 2439 - 0.602706
trbF TrbF pHCG3 CDS124726 588 - 0.573129
trbG probable TrbG pHCG3 CDS123866 837 - 0.587814
trbH probable TrbH pHCG3 CDS123423 441 - 0.653061
trbI probable TrbI pHCG3 CDS122112 1299 - 0.594303
trbJ probable TrbJ pHCG3 CDS126788 852 - 0.596244
trbL probable TrbL pHCG3 CDS125406 1083 - 0.621422