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2024-05-05 13:10:11

Gene list

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Organism: Cupriavidus necator, JMP134

Number of genes found: 101

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Cupriavidus necator, JMP134
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA pJP4 misc_feature85790 92 + 0.48913
NA hypothetical proteinSubName: Full=Plasmid stabilization system; SubName: Full=Uncharacterized protein; pJP4 CDS8665 282 + 0.684397
NA pJP4 misc_feature55727 40640 + 0.660335
NA putative ABC transporter substrate-binding proteinSubName: Full=Putative ABC transporter substrate-binding protein; pJP4 CDS44556 1344 + 0.654762
NA pJP4 misc_feature9574 292 - 0.674658
NA putative thiolaseSubName: Full=Putative thiolase; SubName: Full=Thiolase; pJP4 CDS39368 1167 + 0.685518
NA pJP4 repeat_region10376 59 + 0.525424
NA Upf31.0SubName: Full=Phage DNA methylase; SubName: Full=Upf31.0; pJP4 CDS71769 675 + 0.660741
NA putative transcription regulatorSubName: Full=Putative transcription regulator; SubName: Full=Regulatory protein, IclR; pJP4 CDS42110 780 + 0.634615
NA putative oxidoreductaseSubName: Full=Putative oxidoreductase; SubName: Full=Short-chain dehydrogenase/reductase SDR; pJP4 CDS43716 774 + 0.741602
NA putative transcription regulation proteinSubName: Full=Putative transcription regulation protein; pJP4 CDS34798 840 - 0.678571
NA putative ABC transporter ATP-binding proteinSubName: Full=ABC transporter related; SubName: Full=Putative ABC transporter ATP-binding protein; pJP4 CDS47768 735 + 0.692517
NA putative ABC transporter permease proteinSubName: Full=Inner-membrane translocator; SubName: Full=Putative ABC transporter permease protein; pJP4 CDS45914 879 + 0.691695
NA Upf30.5SubName: Full=Uncharacterized protein; SubName: Full=Upf30.5; pJP4 CDS71183 432 + 0.659722
NA pJP4 repeat_region10376 6355 + 0.600629
NA pJP4 repeat_region16672 59 + 0.508475
NA putative transcription regulatorSubName: Full=Putative transcription regulator; SubName: Full=Regulatory protein, TetR; pJP4 CDS42902 837 + 0.669056
NA pJP4 stem_loop32523 54187 + 0.657538
NA putative mercuric resistance protein MerESubName: Full=MerE; SubName: Full=Putative mercuric resistance protein MerE; pJP4 CDS52097 237 - 0.64557
NA putative long-chain-fatty-acid-CoA ligaseSubName: Full=AMP-dependent synthetase and ligase; SubName: Full=Putative long-chain-fatty-acid-CoA ligase; pJP4 CDS37821 1542 + 0.666667
NA putative ABC transporter permease proteinSubName: Full=Inner-membrane translocator; SubName: Full=Putative ABC transporter permease protein; pJP4 CDS46809 963 + 0.681205
NA putative Tn5504 resolvaseSubName: Full=Phage integrase; SubName: Full=Putative Tn5504 resolvase; pJP4 CDS10464 1692 - 0.6513
NA putative vanillate O-demethylase oxygenase chain ASubName: Full=Putative vanillate O-demethylase oxygenase chain A; SubName: Full=Rieske (2Fe-2S) region; EC=1.14.13.82; pJP4 CDS40968 1077 - 0.640669
NA pJP4 repeat_region55610 38 + 0.473684
IS1071 pJP4 repeat_region51566 110 + 0.472727
IS1071 pJP4 repeat_region48472 110 + 0.518182
IS1071 pJP4 repeat_region9866 110 + 0.472727
ISJP4 pJP4 repeat_region25269 21 + 0.285714
ISJP4 pJP4 repeat_region36878 19 + 0.315789
ISJP4 pJP4 repeat_region24371 19 + 0.368421
din DNA-damage-inducible proteinSubName: Full=DNA-damage-inducible protein; SubName: Full=RelB antitoxin; pJP4 CDS8415 264 + 0.647727
incC1 inclusion membrane proteinSubName: Full=Cobyrinic acid a,c-diamide synthase; SubName: Full=Inclusion membrane protein; pJP4 CDS3621 1083 - 0.647276
incC2 inclusion membrane proteinSubName: Full=Inclusion membrane protein; pJP4 CDS3621 765 - 0.652288
kfrA transcriptional regulatorSubName: Full=Transcriptional regulator; SubName: Full=Uncharacterized protein; pJP4 CDS1365 1032 - 0.747093
klcA stable inheritance proteinSubName: Full=Antirestriction protein; SubName: Full=Stable inheritance protein; pJP4 CDS7814 429 - 0.675991
klcB stable inheritance proteinSubName: Full=Stable inheritance protein; SubName: Full=Uncharacterized protein; pJP4 CDS6331 1209 - 0.695616
kleA stable inheritance proteinSubName: Full=Stable inheritance protein; SubName: Full=Uncharacterized protein; pJP4 CDS5663 237 - 0.670886
kleE stable inheritance proteinSubName: Full=Stable inheritance protein; pJP4 CDS5128 384 - 0.625
kleF stable inheritance proteinSubName: Full=Stable inheritance protein; SubName: Full=Uncharacterized protein; pJP4 CDS4797 330 - 0.633333
korA transcriptional repressorSubName: Full=Transcriptional repressor; pJP4 CDS4382 309 - 0.634304
korB transcriptional repressorSubName: Full=ParB-like partition protein; SubName: Full=Transcriptional repressor; pJP4 CDS2575 1050 - 0.673333
korC transcriptional repressorSubName: Full=Transcriptional repressor; SubName: Full=Uncharacterized protein; pJP4 CDS6057 258 - 0.682171
merA mercury reductaseSubName: Full=Mercuric reductase MerA; SubName: Full=Mercury reductase; pJP4 CDS52713 1686 - 0.656584
merD mercury coregulator proteinSubName: Full=Mercury coregulator protein; SubName: Full=Transcriptional regulator, MerR family; pJP4 CDS52330 366 - 0.696721
merP periplasmic mercury ion binding proteinSubName: Full=Mercuric transport protein periplasmic component; SubName: Full=Periplasmic mercury ion binding protein; pJP4 CDS54470 276 - 0.615942
merR mercury regulatory proteinSubName: Full=Hg(II)-responsive transcriptional regulator; SubName: Full=Mercury regulatory protein; pJP4 CDS55180 435 + 0.609195
merT mercury ion transport proteinSubName: Full=Mercuric transport protein MerT; SubName: Full=Mercury ion transport protein; pJP4 CDS54758 351 - 0.615385
parA resolvaseSubName: Full=Resolvase; pJP4 CDS72445 660 - 0.687879
ssb single-strand DNA binding proteinRecName: Full=Single-stranded DNA-binding protein; pJP4 CDS56994 342 - 0.596491
tfdA 2,4-D / a-ketoglutarate dioxygenaseRecName: Full=Alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase; Short=2,4-D dioxygenase; EC=1.14.11.-; pJP4 CDS36915 864 + 0.634259
tfdBI 2,4-dichlorophenol hydroxylaseRecName: Full=2,4-dichlorophenol 6-monooxygenase; EC=1.14.13.20; AltName: Full=2,4-dichlorophenol hydroxylase; Short=2,4-DCP hydroxylase; pJP4 CDS17688 1797 - 0.631052
tfdBII 2,4-dichlorophenol hydroxylaseSubName: Full=2,4-dichlorophenol hydroxylase; SubName: Full=Chlorophenol monooxygenase; SubName: Full=Monooxygenase, FAD-binding; pJP4 CDS26765 1761 - 0.668938
tfdCI chlorocatechol-1,2-dioxygenaseRecName: Full=Chlorocatechol 1,2-dioxygenase; EC=1.13.11.-; pJP4 CDS22778 768 - 0.565104
tfdCII chlorocatechol-1,2-dioxygenaseSubName: Full=Catechol dioxygenase, N-terminal; SubName: Full=Chlorocatechol 1,2-dioxygenase; SubName: Full=Chlorocatechol-1,2-dioxygenase; pJP4 CDS30403 762 - 0.644357
tfdDI chloromuconate cycloisomeraseRecName: Full=Chloromuconate cycloisomerase; EC=5.5.1.7; AltName: Full=Muconate cycloisomerase II; pJP4 CDS21669 1113 - 0.577718
tfdDII chloromuconate cycloisomeraseRecName: Full=Chloromuconate cycloisomerase; EC=5.5.1.7; AltName: Full=Muconate cycloisomerase II; pJP4 CDS31209 1119 - 0.666667
tfdEI dienelactone hydrolaseRecName: Full=Carboxymethylenebutenolidase 1; EC=3.1.1.45; AltName: Full=Carboxymethylenebutenolidase I; AltName: Full=Dienelactone hydrolase I; Short=DLH I; pJP4 CDS20890 705 - 0.547518
tfdEII dienelactone hydrolaseRecName: Full=Carboxymethylenebutenolidase 2; EC=3.1.1.45; AltName: Full=Carboxymethylenebutenolidase II; AltName: Full=Dienelactone hydrolase II; Short=DLH II; pJP4 CDS29674 708 - 0.652542
tfdFI maleylacetate reductaseRecName: Full=Maleylacetate reductase 1; EC=1.3.1.32; AltName: Full=Maleylacetate reductase I; pJP4 CDS19829 1065 - 0.565258
tfdFII maleylacetate reductaseRecName: Full=Maleylacetate reductase 2; EC=1.3.1.32; AltName: Full=Chloromaleylacetate reductase; AltName: Full=Maleylacetate reductase II; pJP4 CDS28593 1080 - 0.698148
tfdK 2,4-D transport proteinSubName: Full=2,4-D transport protein; SubName: Full=Benzoate transport; SubName: Full=TfdK; pJP4 CDS25286 1383 - 0.654375
tfdR LysR-type transcriptional regulatorRecName: Full=HTH-type transcriptional regulator TdfR; pJP4 CDS32523 888 + 0.666667
tfdR putative enoyl-CoA hydrataseSubName: Full=Putative enoyl-CoA hydratase; pJP4 CDS33424 1347 + 0.687454
tfdS LysR-type transcriptional regulatorRecName: Full=HTH-type transcriptional regulator TfdS; pJP4 CDS35822 888 - 0.667793
tfdT transcriptional regulatory proteinRecName: Full=HTH-type transcriptional regulator TfdT; pJP4 CDS23741 687 + 0.57933
tnpA putative Tn5504 transposaseSubName: Full=Putative Tn5504 transposase; SubName: Full=Transposase Tn3; pJP4 CDS12299 3027 + 0.58672
tnpA IS1071 transposaseSubName: Full=IS1071 transposase; SubName: Full=Transposase Tn3; pJP4 CDS48617 2916 + 0.596708
tnpA ISJP4 transposaseSubName: Full=ISJP4 transposase; SubName: Full=Transposase, IS4 family; pJP4 CDS24489 789 + 0.618504
traC2 DNA replication primaseSubName: Full=DNA replication primase; SubName: Full=TOPRIM; pJP4 CDS73785 4347 - 0.68622
traC3 DNA replication primaseSubName: Full=DNA replication primase; pJP4 CDS73785 3693 - 0.686163
traC4 DNA replication primaseSubName: Full=DNA replication primase; pJP4 CDS73785 2244 - 0.701426
traD TraDSubName: Full=Conjugal transfer protein; SubName: Full=TraD; pJP4 CDS78135 390 - 0.725641
traE DNA topoisomeraseRecName: Full=DNA topoisomerase; EC=5.99.1.2; pJP4 CDS78546 2064 - 0.671027
traF maturation peptidaseSubName: Full=Maturation peptidase; SubName: Full=TraF peptidase. Serine peptidase. MEROPS family S26C; pJP4 CDS80621 537 - 0.662942
traG DNA transport proteinSubName: Full=DNA transport protein; SubName: Full=TRAG protein; pJP4 CDS81154 1914 - 0.66092
traH DNA relaxaseSubName: Full=DNA relaxase; pJP4 CDS83366 393 - 0.676845
traI relaxosome stabilization proteinSubName: Full=Relaxase/mobilization nuclease domain; SubName: Full=Relaxosome stabilization protein; pJP4 CDS83064 2241 - 0.668898
traJ oriT binding proteinSubName: Full=OriT binding protein; pJP4 CDS85339 318 - 0.663522
traK oriT binding proteinSubName: Full=OriT binding protein; SubName: Full=TraK protein of DNA transfer system; pJP4 CDS86087 399 + 0.631579
traL transfer origin proteinSubName: Full=Transfer origin protein; SubName: Full=Transfer origin protein, TraL; pJP4 CDS86485 726 + 0.628099
traM essential transfer proteinSubName: Full=Essential transfer protein; SubName: Full=TraM protein; pJP4 CDS87210 441 + 0.675737
traN TraNSubName: Full=TraN; SubName: Full=Uncharacterized protein; pJP4 CDS165 654 - 0.692661
traO TraOSubName: Full=Putative conjugation protein TraO; SubName: Full=TraO; pJP4 CDS847 348 - 0.583333
trbA regulatory protein for mating pair formationSubName: Full=Helix-turn-helix motif; SubName: Full=Regulatory protein for mating pair formation; pJP4 CDS57571 363 + 0.586777
trbB ATPase autophosphorylaseSubName: Full=ATPase autophosphorylase; SubName: Full=Type II secretion system protein E; pJP4 CDS58243 963 + 0.619938
trbC mating pair formationSubName: Full=Conjugal transfer protein TrbC; SubName: Full=Mating pair formation; pJP4 CDS59222 465 + 0.668817
trbD mating pair formationSubName: Full=Conjugal transfer TrbD; SubName: Full=Mating pair formation; pJP4 CDS59690 312 + 0.634615
trbE mating pair formationSubName: Full=CagE, TrbE, VirB component of type IV transporter system; SubName: Full=Mating pair formation; pJP4 CDS59998 2559 + 0.63814
trbF mating pair formationSubName: Full=Conjugal transfer protein; SubName: Full=Mating pair formation; pJP4 CDS62553 783 + 0.65645
trbG mating pair formationSubName: Full=Mating pair formation; pJP4 CDS63332 921 + 0.639522
trbH mating pair formationSubName: Full=Conjugal transfer TrbH; SubName: Full=Mating pair formation; pJP4 CDS64255 489 + 0.705521
trbI mating pair formationSubName: Full=Conjugation TrbI-like protein; SubName: Full=Mating pair formation; pJP4 CDS64748 1422 + 0.673699
trbJ mating pair formationSubName: Full=Mating pair formation; SubName: Full=TrbJ protein of DNA transfer system; pJP4 CDS66190 765 + 0.60915
trbK plasmid entry / exclusionSubName: Full=Entry exclusion protein TrbK; SubName: Full=Plasmid entry / exclusion; pJP4 CDS66964 228 + 0.622807
trbL DNA topoisomeraseSubName: Full=DNA topoisomerase; SubName: Full=TrbL/VirB6 plasmid conjugal transfer protein; pJP4 CDS67202 1719 + 0.681792
trbM mating pair formationSubName: Full=Mating pair formation; SubName: Full=TrbM; pJP4 CDS68938 588 + 0.67517
trbN mating pair formationSubName: Full=Lytic transglycosylase, catalytic; SubName: Full=Mating pair formation; pJP4 CDS69539 636 + 0.691824
trbO TrbOSubName: Full=TrbO; SubName: Full=Uncharacterized protein; pJP4 CDS70203 267 + 0.636704
trbP TrbpSubName: Full=TraX; SubName: Full=Trbp; pJP4 CDS70469 699 + 0.682403
trfA1 transreplication factorSubName: Full=Transreplication factor; SubName: Full=TrfA; pJP4 CDS55727 1221 - 0.657658
trfA2 transreplication factorSubName: Full=Transreplication factor; pJP4 CDS55727 855 - 0.636257