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2024-05-04 01:48:47

Gene list

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Organism: Salmonella typhimurium

Number of genes found: 170

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Salmonella typhimurium
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA R64 repeat_unit104215 19 + 0.631579
NA R64 misc_feature103208 1937 + 0.454827
NA R64 repeat_region8975 9148 + 0.399432
NA RecName: Full=22 kDa relaxation protein; pSC101 CDS2339 585 - 0.497436
NA R64 repeat_region4148 15899 + 0.471728
NA R64 repeat_unit67021 8 + 0.875
NA SubName: Full=PilVB C-terminal segment; SubName: Full=Prepilin, shufflon protein B; Flags: Fragment; R64 CDS103221 246 + 0.402439
NA R64 repeat_unit103714 19 + 0.631579
NA R64 repeat_unit105462 17 + 0.588235
NA R64 misc_feature103208 525 + 0.453333
NA R64 repeat_unit67010 8 + 0.75
NA R64 repeat_unit66964 17 + 0.411765
NA SubName: Full=PilVA C-terminal segment; Flags: Fragment; R64 CDS104569 225 + 0.497778
NA R64 protein_bind66967 14 + 0.357143
NA R64 oriT66951 83 + 0.566265
NA RecName: Full=43 kDa relaxation protein; pSC101 CDS2936 1116 - 0.541219
NA R64 misc_feature104571 574 + 0.470383
NA R64 repeat_unit66987 17 + 0.411765
NA SubName: Full=PilVB C-terminal segment; SubName: Full=Prepilin, shufflon protein B; Flags: Fragment; R64 CDS103468 252 - 0.484127
NA R64 misc_feature104242 348 + 0.442529
NA SubName: Full=PilVD C-terminal segment; Flags: Fragment; R64 CDS104255 288 + 0.413194
NA R64 repeat_unit104571 19 + 0.631579
NA pSC101 rep_origin4071 45 + 0.533333
NA R64 repeat_unit104242 19 + 0.578947
NA R64 repeat_unit105273 17 + 0.647059
NA R64 oriT66951 30 + 0.5
NA R64 repeat_unit103208 19 + 0.631579
NA R64 misc_feature103741 493 + 0.448276
NA SubName: Full=PilVC C-terminal segment; Flags: Fragment; R64 CDS103754 219 + 0.424658
NA SubName: Full=PilVC C-terminal segment; Flags: Fragment; R64 CDS103969 252 - 0.444444
NA R64 misc_signal66955 2 - 0.5
NA R64 CDS104790 342 - 0.44152
NA R64 repeat_unit103741 19 + 0.684211
IS101 pSC101 repeat_region2024 209 + 0.397129
IS102 pSC101 repeat_region6916 1057 + 0.530747
IS1133 R64 repeat_region7819 10389 + 0.406873
IS2 R64 repeat_region3598 17235 + 0.476182
ard SubName: Full=Antirestriction protein; R64 CDS61426 501 + 0.548902
arsA R64 misc_feature3542 18992 + 0.481413
arsB RecName: Full=Arsenical pump membrane protein; R64 CDS22582 1290 + 0.535659
arsC SubName: Full=Arsenate reductase; R64 CDS23884 426 + 0.485915
arsD SubName: Full=Arsenic metallochaperone; R64 CDS3162 363 + 0.493113
arsH SubName: Full=Arsenical resistance protein ArsH; R64 CDS29179 651 - 0.488479
arsR SubName: Full=DNA-binding transcriptional repressor ArsR; R64 CDS2761 354 + 0.488701
excA SubName: Full=Surface exclusion protein; R64 CDS76983 444 - 0.407658
excB surface exclusion proteinSubName: Full=Surface exclusion protein; R64 CDS76983 663 - 0.38914
ibfA SubName: Full=IbfA protein; R64 CDS32653 1557 - 0.354528
impA RecName: Full=Protein ImpA; EC=3.4.21.-; Contains: RecName: Full=Protein ImpA; R64 CDS49501 438 - 0.557078
impB SubName: Full=DNA polymerase V subunit ImpB; SubName: Full=ImpB; SubName: Full=Uncharacterized protein; R64 CDS48227 1275 - 0.515294
impC SubName: Full=DNA damage-inducible protein I; SubName: Full=DinI-like family protein; SubName: Full=ImpC; R64 CDS49935 249 - 0.514056
kor SubName: Full=Plasmid maintenance protein; R64 CDS38386 231 - 0.549784
mck RecName: Full=tRNA(fMet)-specific endonuclease VapC; EC=3.1.-.-; AltName: Full=RNase VapC; AltName: Full=Toxin VapC; R64 CDS37973 417 - 0.592326
nikA SubName: Full=NikA; SubName: Full=NikA oriT-specific DNA binding protein; SubName: Full=NikA oriT-specific DNA-binding protein; SubName: Full=NikB; R64 CDS67048 333 + 0.423423
nikB SubName: Full=NikB relaxase; SubName: Full=Relaxase; SubName: Full=TrbD; R64 CDS67391 2700 + 0.521481
nuc EDTA-resistant nucleaseSubName: Full=EDTA-resistant nuclease; SubName: Full=Nuclease; R64 CDS95430 552 - 0.496377
parA SubName: Full=Type I plasmid partitioning protein; R64 CDS46836 981 + 0.441386
parB SubName: Full=Plasmid partitioning and stability protein StbB; SubName: Full=Plasmid stability protein; SubName: Full=Type I plasmid partitioning protein; R64 CDS47809 417 + 0.429257
pifA SubName: Full=Phage inhibition protein; R64 CDS40141 2226 - 0.484277
pilI SubName: Full=PilI protein; SubName: Full=PilI type IV pilus biogenesis protein; R64 CDS116827 255 - 0.580392
pilJ SubName: Full=PilJ type IV pilus biogenesis protein; R64 CDS116332 453 - 0.355408
pilK SubName: Full=PilK type IV pilus biogenesis protein; R64 CDS115692 591 - 0.368866
pilL lipoproteinSubName: Full=Lipoprotein; SubName: Full=PilL lipoprotein; R64 CDS114591 1068 - 0.5
pilM SubName: Full=PilM; SubName: Full=PilM protein; SubName: Full=PilM type IV pilus biogenesis protein; R64 CDS114154 438 - 0.486301
pilN lipoproteinSubName: Full=Lipoprotein; SubName: Full=PilN; SubName: Full=PilN type IV pilus secretin; R64 CDS112458 1683 - 0.492573
pilO SubName: Full=PilO type IV pilus biogenesis protein; R64 CDS111170 1296 - 0.486883
pilP SubName: Full=PilP protein; SubName: Full=PilP type IV pilus biogenesis protein; SubName: Full=Type IV pilus biogenesis protein PilP; R64 CDS110731 453 - 0.439294
pilQ nucleotide-binding proteinSubName: Full=ATP-binding protein; SubName: Full=PilQ; SubName: Full=PilQ type IV pilus ATPase; R64 CDS109167 1554 - 0.469755
pilR integral membrane proteinSubName: Full=Integral membrane protein; SubName: Full=PilR; SubName: Full=PilR integral membrane protein; R64 CDS108057 1098 - 0.443534
pilS typeIV prepilinSubName: Full=PilS type IV prepilin; Flags: Precursor; R64 CDS107425 615 - 0.435772
pilS R64 mat_peptide107428 543 - 0.458564
pilT SubName: Full=PilT; SubName: Full=PilT lytic transglycosidase; SubName: Full=PilT lytic transglycosilase; SubName: Full=PilT protein; R64 CDS106855 561 - 0.434938
pilU prepilin peptidaseSubName: Full=Pepilin peptidase; SubName: Full=PilU prepilin peptidase; SubName: Full=Prepilin peptidase; R64 CDS106214 657 - 0.420091
pilV typeIV prepilinSubName: Full=PilVA typeIV preadhesin; SubName: Full=Type IV preadhesin; R64 CDS104790 1425 - 0.470175
pilV R64 repeat_unit105126 19 + 0.631579
pndA post-segregation killing proteinSubName: Full=Post-segregation killing protein; R64 CDS75000 153 + 0.470588
pndC post-segregation killing proteinSubName: Full=Post-segregation killing protein; R64 CDS74942 204 + 0.485294
psiA SubName: Full=Plasmid SOS inhibition protein A; SubName: Full=Plasmid SOS inhibition protein PsiA; R64 CDS59651 720 + 0.5625
psiB SubName: Full=Plasmid SOS inhibition protein B; SubName: Full=PsiB; R64 CDS59220 435 + 0.544828
rci shufflon-specific DNA reconbinaseSubName: Full=Shufflon-specific DNA recombinase; SubName: Full=Shufflon-specific DNA reconbinase; SubName: Full=Shufflon-specific recombinase; R64 CDS102002 1155 - 0.489177
repC SubName: Full=Replication initiation protein; R64 CDS42667 795 - 0.620126
repY SubName: Full=Regulator of repZ expression; SubName: Full=RepY; R64 CDS378 90 + 0.5
repZ SubName: Full=Replication initiation protein; R64 CDS455 1032 + 0.562016
resA SubName: Full=Phage integrase family protein; SubName: Full=Resolvase; R64 CDS44425 780 + 0.589744
sogL DNA primaseSubName: Full=SogL DNA primase; R64 CDS91573 3768 - 0.54379
sogS SubName: Full=SogS transfer protein; R64 CDS91573 2535 - 0.527022
ssb RecName: Full=Single-stranded DNA-binding protein; R64 CDS56330 528 + 0.602273
strA SubName: Full=Aminoglycoside 3-phosphotransferase; SubName: Full=Aminoglycoside phosphotransferase; SubName: Full=StrA streptomycin APH(3)-Ib phosphotransferase; SubName: Full=Streptomycin phosphotransferase; SubName: Full=Streptomycin phosphotransferase A, StrA; SubName: Full=Streptomycin phosphotransferase StrA; SubName: Full=Streptomycin resistance protein; SubName: Full=Streptomycin resistance protein A; R64 CDS18301 804 + 0.562189
strB SubName: Full=Aminoglycoside phosphotransferase; SubName: Full=Aminoglycoside resistance protein StrB; SubName: Full=Aminoglycoside/hydroxyurea antibiotic resistance kinase; SubName: Full=StrB streptomycin APH(6)-Id phosphotransferase; SubName: Full=Streptomycin phosphotransferase; SubName: Full=Streptomycin phosphotransferase B, StrB; SubName: Full=Streptomycin resistance protein B; R64 CDS19104 837 + 0.55914
tetA SubName: Full=TetA; SubName: Full=Tetracycline antiporter protein; SubName: Full=Tetracycline resistance protein; R64 CDS11510 1206 - 0.433665
tetC SubName: Full=Transcriptional regulator of tet operon; R64 CDS10804 594 + 0.326599
tetD SubName: Full=Transcriptional regulator of tet operon; R64 CDS10300 417 - 0.359712
tetR SubName: Full=Tetracycline repressor protein TetR; SubName: Full=Tetracycline resistance protein TetR; R64 CDS12797 624 + 0.402244
tnpA SubName: Full=Transposase_7; R64 CDS4218 2886 - 0.619543
tnpL SubName: Full=TnpA; SubName: Full=Transposase_11; R64 CDS16807 1209 - 0.450786
tnpR SubName: Full=Putative transposase; SubName: Full=Transposase_11; R64 CDS9082 1209 + 0.448304
traA SubName: Full=TraA protein; R64 CDS119952 177 - 0.485876
traB SubName: Full=Transcription termination factor NusG; R64 CDS118866 534 - 0.432584
traC SubName: Full=Putative positive regulator; R64 CDS117929 684 - 0.504386
traD SubName: Full=TraD protein; R64 CDS117349 567 - 0.430335
traE SubName: Full=TraE; SubName: Full=TraE protein; R64 CDS101027 825 - 0.436364
traF SubName: Full=TraF; SubName: Full=TraF protein; R64 CDS99740 1203 - 0.47049
traG SubName: Full=Histidine phosphatase domain protein; SubName: Full=TraG; R64 CDS99096 585 - 0.403419
traH lipoproteinSubName: Full=IncI1 conjugal transfer protein TraH; SubName: Full=TraH; SubName: Full=TraH lipoprotein; R64 CDS98243 459 - 0.509804
traI lipoproteinSubName: Full=TraI; SubName: Full=TraI lipoprotein; R64 CDS97428 819 - 0.526252
traJ nucleotide-binding proteinSubName: Full=IncI1 conjugal transfer protein TraJ; SubName: Full=TraJ; SubName: Full=TraJ transfer ATPase; R64 CDS96283 1149 - 0.51436
traK SubName: Full=TraK transfer protein; R64 CDS95996 291 - 0.491409
traL SubName: Full=IncI1 conjugal transfer protein TraL; SubName: Full=TraL; SubName: Full=TraL transfer protein; R64 CDS91208 348 - 0.528736
traM SubName: Full=IcmL family protein; SubName: Full=TraM; R64 CDS90519 693 - 0.507937
traN SubName: Full=TraN; SubName: Full=TraN transfer protein; R64 CDS89525 984 - 0.54065
traO SubName: Full=TraO; SubName: Full=TraO transfer protein; R64 CDS88233 1290 - 0.510078
traP SubName: Full=IncI1 conjugal transfer protein TraP; SubName: Full=TraP; SubName: Full=TraP transfer protein; R64 CDS87529 705 - 0.506383
traQ SubName: Full=TraQ; SubName: Full=TraQ transfer protein; SubName: Full=Uncharacterized protein; R64 CDS87002 528 - 0.530303
traR SubName: Full=TraR; SubName: Full=TraR transfer protein; R64 CDS86547 405 - 0.511111
traS SubName: Full=TraS; SubName: Full=TraS transfer protein; R64 CDS86295 189 - 0.486772
traT SubName: Full=TraT; SubName: Full=TraT transfer protein; R64 CDS85511 801 - 0.508115
traU nucleotide-binding proteinSubName: Full=TraU; SubName: Full=TraU nucleotide-binding protein; R64 CDS82377 3045 - 0.507718
traV SubName: Full=TraV transfer protein; R64 CDS81763 615 - 0.515447
traW lipoproteinSubName: Full=TraW lipoprotein; R64 CDS80594 1203 - 0.527016
traX SubName: Full=TraX; SubName: Full=TraX transfer protein; R64 CDS79981 585 - 0.48547
traY integral membrane proteinSubName: Full=TraY integral membrane protein; R64 CDS77716 2238 - 0.466935
trbA SubName: Full=IncI1 conjugal transfer protein TrbA; SubName: Full=TrbA; SubName: Full=TrbA transfer protein; SubName: Full=Uncharacterized protein; R64 CDS73500 1209 - 0.511993
trbB SubName: Full=Protein disulfide isomerase; SubName: Full=Protein-disulfide isomerase; SubName: Full=TrbB; R64 CDS72411 1071 - 0.512605
trbC SubName: Full=TrbC; SubName: Full=TrbC transfer protein; SubName: Full=Type IV secretory pathway, VirD4 components; R64 CDS70127 2292 - 0.498691
yadA R64 misc_feature3609 16810 - 0.475907
yahA SubName: Full=Transposase_8; R64 CDS7883 276 + 0.423913
yaiA R64 misc_feature8155 10015 + 0.405991
ybdA SubName: Full=Putative bacterial regulatory protein of the arsR family; SubName: Full=Regulator of tet operon (HTH_ARSR); SubName: Full=Transcriptional regulator of tet operon; R64 CDS13398 687 - 0.416303
ybeA SubName: Full=YbeA protein; R64 CDS14092 489 - 0.376278
ybeB SubName: Full=JemB; SubName: Full=YbeB protein; R64 CDS14471 321 - 0.34891
ybfA SubName: Full=JemA; SubName: Full=Sodium/glutamate symporter; R64 CDS15236 1206 + 0.394693
ycaA SubName: Full=IS2 OrfA protein; SubName: Full=IS2 repressor TnpA; SubName: Full=Transposase_8; R64 CDS20376 366 - 0.530055
yceA SubName: Full=Sortase and related acyltransferases; R64 CDS24344 537 - 0.497207
ycfA SubName: Full=YcfA protein; R64 CDS25092 813 + 0.482165
ycfB SubName: Full=Transcription regulator; R64 CDS25967 369 + 0.441734
ycgA SubName: Full=Arsenite-activating ATPase; R64 CDS26409 1758 - 0.534699
yciA SubName: Full=Arsenic metallochaperone; R64 CDS28187 363 - 0.523416
yciB SubName: Full=RNA polymerase sigma factor SigZ; R64 CDS28625 546 - 0.487179
ycjA SubName: Full=Transcriptional regulator of ars operon; SubName: Full=Transcriptional regulator, ArsR family; R64 CDS29990 324 - 0.432099
ydaA SubName: Full=Putative permease; R64 CDS30418 1134 + 0.440917
ydbA SubName: Full=Conjugation repressor protein; SubName: Full=Uncharacterized protein; R64 CDS31844 618 - 0.47411
ydeA SubName: Full=YdeA protein; R64 CDS34472 591 - 0.651438
ydfA SubName: Full=YdfA protein; R64 CDS35062 258 - 0.515504
ydfB SubName: Full=ABC transporter nucleotide-binding protein; SubName: Full=Uncharacterized protein; R64 CDS35673 2139 + 0.499766
ydiA SubName: Full=YdiA protein; R64 CDS38912 291 + 0.457045
ydjA SubName: Full=Predicted nucleotide-binding protein; SubName: Full=Uncharacterized protein; R64 CDS39192 900 + 0.472222
yedA SubName: Full=YedA protein; R64 CDS43971 453 + 0.567329
yefA SubName: Full=Putative plasmid stability protein; SubName: Full=Type II bacterial partitioning protein; R64 CDS45350 678 + 0.424779
yegA SubName: Full=Uncharacterized protein; SubName: Full=YegA protein; R64 CDS46114 309 + 0.446602
yfaA SubName: Full=YfaA protein; R64 CDS50294 270 + 0.625926
yfaB SubName: Full=DUF1281 family protein; R64 CDS50577 927 + 0.546926
yfbA SubName: Full=YfbA protein; R64 CDS51500 312 + 0.628205
yfbB SubName: Full=DNA adenine methyltransferase YhdJ; EC=2.1.1.72; SubName: Full=Putative DNA methyltransferase; SubName: Full=Putative mrthylase; R64 CDS51888 684 + 0.554094
yfcA SubName: Full=Uncharacterized protein; SubName: Full=YfcA protein; R64 CDS52572 222 + 0.531532
yfcB SubName: Full=DUF1380 family protein; SubName: Full=Uncharacterized protein; R64 CDS52805 435 + 0.565517
yfdA SubName: Full=YfdA protein; R64 CDS53290 771 + 0.607004
yfeA SubName: Full=DUF1472 family protein; R64 CDS54035 471 + 0.619958
yfeB SubName: Full=Antirestriction protein; SubName: Full=Putative antirestriction protein; R64 CDS54478 426 + 0.532864
yfeC SubName: Full=YfeC protein; R64 CDS54950 423 + 0.562648
yffA SubName: Full=YffA protein; R64 CDS55369 192 + 0.5
yffB SubName: Full=Uncharacterized protein; SubName: Full=YffB protein; R64 CDS55631 348 + 0.655172
yfhA SubName: Full=Type II bacterial partitioning protein; SubName: Full=Uncharacterized protein; R64 CDS57117 2049 + 0.584675
ygaA SubName: Full=Uncharacterized protein; SubName: Full=YgaA protein; R64 CDS60367 597 + 0.537688
ygbA SubName: Full=DUF1472 family protein; R64 CDS61035 471 + 0.624204
ygcA SubName: Full=Uncharacterized protein; SubName: Full=YdfA; SubName: Full=YgcA protein; R64 CDS62655 435 + 0.581609
ygdA SubName: Full=Uncharacterized protein; SubName: Full=YdfB; SubName: Full=YgdA protein; R64 CDS63181 267 + 0.58427
ygdB SubName: Full=Transposase_31; SubName: Full=Uncharacterized protein; R64 CDS63512 942 + 0.538217
ygeA SubName: Full=Uncharacterized protein; SubName: Full=YgeA; SubName: Full=YgeA protein; R64 CDS64716 252 - 0.559524
ygfA SubName: Full=YgfA protein; R64 CDS65087 336 + 0.592262
ygfB SubName: Full=Uncharacterized protein; SubName: Full=YgfB protein; R64 CDS65547 849 + 0.51119
yggA SubName: Full=Uncharacterized protein; SubName: Full=YggA protein; R64 CDS66480 336 - 0.425595