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2024-04-28 22:40:52

Gene list

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Organism: Plasmid F

Number of genes found: 224

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Plasmid F
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA Plasmid F repeat_unit58081 541 + 0.615527
NA Plasmid F repeat_region68700 115 + 0.530435
NA Plasmid F repeat_unit38218 21 - 0.380952
NA Plasmid F conflict68972 1 +
NA Plasmid F repeat_unit63157 18 + 0.611111
NA Plasmid F conflict43446 1 + 1
NA Plasmid F repeat_unit15093 39 + 0.512821
NA Plasmid F repeat_unit63135 18 + 0.777778
NA Plasmid F repeat_unit51999 44 + 0.522727
NA Plasmid F repeat_unit52129 43 + 0.534884
NA Plasmid F conflict68914 2 + 0.5
NA Plasmid F repeat_unit52258 43 + 0.534884
NA Plasmid F repeat_unit24829 372 + 0.467742
NA Plasmid F repeat_region66340 68 + 0.602941
NA Plasmid F repeat_unit62942 14 + 0.5
NA Plasmid F repeat_unit49433 19 + 0.421053
NA Plasmid F repeat_unit48275 20 + 0.45
NA Plasmid F conflict44769 1 + 1
NA Plasmid F conflict89238 1 + 1
NA Plasmid F repeat_unit36592 21 - 0.285714
NA Plasmid F repeat_unit52301 43 + 0.534884
NA Plasmid F conflict67995 1 +
NA Plasmid F conflict44747 1 + 1
NA Plasmid F repeat_unit49350 19 + 0.526316
NA Plasmid F repeat_unit62057 10 + 0.5
NA Plasmid F conflict48030 1 +
NA Plasmid F conflict48051 2 + 0.5
NA Plasmid F conflict64598 1 +
NA Plasmid F repeat_unit36425 21 - 0.333333
NA Plasmid F repeat_unit24457 372 + 0.47043
NA Plasmid F conflict44709 1 + 1
NA Plasmid F conflict44736 1 + 1
NA Plasmid F repeat_region68648 39 + 0.410256
NA Plasmid F conflict76701 1 +
NA Plasmid F repeat_unit35982 21 - 0.380952
NA Plasmid F repeat_unit37837 21 + 0.380952
NA Plasmid F conflict56074 1 + 1
NA Plasmid F conflict53741 1 + 1
NA Plasmid F repeat_unit63208 14 + 0.642857
NA Plasmid F conflict2059 1 +
NA Plasmid F repeat_unit52043 43 + 0.55814
NA Plasmid F conflict91955 1 +
NA Plasmid F repeat_region67022 30 + 0.433333
NA Plasmid F conflict69385 1 + 1
NA Plasmid F conflict44816 1 + 1
NA Plasmid F repeat_unit18951 42 + 0.452381
NA Plasmid F conflict89730 3 + 1
NA Plasmid F repeat_region4191 5981 + 0.425013
NA Plasmid F oriT66118 290 + 0.431034
NA Plasmid F conflict3084 2 + 1
NA Plasmid F repeat_unit52172 43 + 0.55814
NA Plasmid F misc_feature45934 202 + 0.49505
NA Plasmid F misc_feature45922 28 + 0.464286
NA Plasmid F repeat_unit36377 21 - 0.428571
NA Plasmid F repeat_unit63469 543 + 0.626151
NA Plasmid F repeat_unit36552 21 - 0.380952
NA Plasmid F repeat_unit62899 15 + 0.666667
NA Plasmid F repeat_unit10137 35 + 0.514286
NA Plasmid F repeat_unit16312 39 + 0.512821
NA Plasmid F repeat_region66250 45 + 0.6
NA Plasmid F repeat_region88730 39 + 0.307692
NA Plasmid F repeat_unit48330 20 + 0.5
NA Plasmid F repeat_unit52344 43 + 0.534884
NA Plasmid F repeat_unit37816 21 + 0.285714
NA Plasmid F repeat_unit52215 43 + 0.511628
NA Plasmid F conflict88699 2 + 0.5
NA Plasmid F conflict92597 1 + 1
NA Plasmid F conflict52320 1 + 1
NA Plasmid F conflict52762 1 + 1
NA Plasmid F repeat_region66156 18 + 0.555556
NA Plasmid F conflict69563 1 + 1
NA Plasmid F repeat_unit36622 21 + 0.333333
NA Plasmid F repeat_unit52387 43 + 0.511628
NA Plasmid F repeat_region66944 17 + 0.529412
NA Plasmid F repeat_unit49204 19 + 0.473684
NA Plasmid F misc_feature66157 2 + 0.5
NA Plasmid F conflict47310 2 + 0.5
NA Plasmid F repeat_unit62978 159 + 0.484277
NA Plasmid F misc_feature48136 217 + 0.396313
NA Plasmid F repeat_region89594 95 + 0.410526
NA Plasmid F repeat_unit52430 43 + 0.534884
NA Plasmid F conflict69409 2 + 0.5
NA Plasmid F repeat_unit49259 19 + 0.421053
NA Plasmid F repeat_unit25573 246 + 0.422764
NA Plasmid F repeat_unit1 39 + 0.512821
NA Plasmid F repeat_unit63226 14 + 0.642857
NA Plasmid F repeat_unit48308 20 + 0.4
NA Plasmid F repeat_unit24085 372 + 0.475806
NA Plasmid F repeat_unit25201 372 + 0.483871
NA Plasmid F conflict98794 1 + 1
NA Plasmid F conflict3089 1 + 1
NA Plasmid F conflict83304 6 + 0.5
NA Plasmid F repeat_unit36407 21 - 0.47619
NA Plasmid F repeat_unit52086 43 + 0.534884
NA Plasmid F repeat_unit62107 10 + 0.5
NA Plasmid F repeat_unit48254 20 + 0.4
NA Plasmid F repeat_unit1220 39 + 0.512821
NA Plasmid F repeat_unit17662 41 + 0.365854
NA Plasmid F repeat_unit49226 19 + 0.526316
NA Plasmid F repeat_region57997 90 + 0.444444
NA Plasmid F conflict89565 1 + 1
NA Plasmid F repeat_unit4191 35 + 0.514286
NA Plasmid F conflict77059 1 + 1
NA Plasmid F repeat_region66130 20 + 0.5
NA Plasmid F repeat_region66985 31 + 0.612903
NA Plasmid F repeat_unit37858 21 + 0.380952
NA Plasmid F repeat_region67654 21 + 0.238095
NA Plasmid F repeat_unit62880 14 + 0.357143
IS2 Plasmid F repeat_region17662 1331 + 0.530428
IS3a Plasmid F repeat_region1 1258 + 0.535771
IS3b Plasmid F repeat_region15093 1258 + 0.533386
artA RecName: Full=Protein ArtA; Plasmid F CDS82206 315 - 0.336508
ccdA(letA) RecName: Full=Antitoxin CcdA; AltName: Full=LynA; AltName: Full=Protein H; AltName: Full=Protein LetA; Plasmid F CDS46340 219 + 0.506849
ccdB(letD) RecName: Full=Toxin CcdB; AltName: Full=Cytotoxic protein CcdB; AltName: Full=LynB; AltName: Full=Protein G; AltName: Full=Protein LetD; Plasmid F CDS46560 306 + 0.503268
finO Plasmid F repeat_unit99157 3 + 0.666667
finO Plasmid F misc_feature1259 97901 + 0.480986
finO Plasmid F repeat_unit1259 3 + 0.666667
finP Plasmid F misc_RNA66977 79 - 0.493671
flmA RecName: Full=Stable plasmid inheritance protein; AltName: Full=F leading maintenance protein; Plasmid F CDS62976 159 + 0.477987
flmB Plasmid F misc_RNA62827 101 - 0.49505
flmC RecName: Full=Protein FlmC; AltName: Full=F-plasmid maintenance protein C; Plasmid F CDS62918 213 + 0.483568
inc Plasmid F misc_RNA3747 93 - 0.462366
int RecName: Full=Probable site-specific recombinase; Plasmid F CDS35618 741 + 0.5722
ompP RecName: Full=Outer membrane protease OmpP; EC=3.4.23.-; Flags: Precursor; Plasmid F CDS32322 948 + 0.418776
pifA RecName: Full=Phage T7 exclusion protein; Plasmid F CDS42445 2226 - 0.484277
psiA RecName: Full=Protein PsiA; Plasmid F CDS61982 720 + 0.602778
psiB RecName: Full=Protein PsiB; Plasmid F CDS61551 435 + 0.567816
repA1 RepFIC replication initiation protein Plasmid F misc_feature3917 274 + 0.416058
repA2 replication regulatory proteinRecName: Full=Replication regulatory protein RepA2; AltName: Full=Protein CopB; Plasmid F CDS3359 258 + 0.492248
repB RecName: Full=RepFIB replication protein A; Plasmid F CDS36643 978 - 0.521472
repC replication proteinRecName: Full=Transcriptional repressor PifC; Short=Protein C; Plasmid F CDS44672 1092 - 0.630037
repE replication initiation proteinRecName: Full=Replication initiation protein; Short=Protein E; Short=Protein rep; AltName: Full=Protein F4; Plasmid F CDS48446 756 + 0.472222
repL RecName: Full=Positive regulator of RepFIC repA1 expression; AltName: Full=RepA1 leader peptide; Plasmid F CDS3850 75 + 0.466667
resD resolvaseRecName: Full=Resolvase; AltName: Full=Protein D; Plasmid F CDS46866 807 + 0.57373
sopA RecName: Full=Protein SopA; AltName: Full=Plasmid partition protein A; Plasmid F CDS49780 1176 + 0.471088
sopB RecName: Full=Protein SopB; AltName: Full=Plasmid partition protein B; Plasmid F CDS50955 972 + 0.460905
srnB RecName: Full=Protein SrnB; Plasmid F CDS2869 207 + 0.458937
srnB' RecName: Full=Protein SrnB; Plasmid F CDS2926 150 + 0.48
srnC Plasmid F misc_RNA2821 62 - 0.419355
ssb single-strand DNA binding proteinRecName: Full=Plasmid-derived single-stranded DNA-binding protein; Short=SSB; AltName: Full=Helix-destabilizing protein; Plasmid F CDS58643 540 + 0.598148
tnpA RecName: Full=Transposase for transposon gamma-delta; AltName: Full=Transposon Tn1000 transposase; Plasmid F CDS7130 3009 + 0.484546
tnpR RecName: Full=Transposon gamma-delta resolvase; AltName: Full=Transposon Tn1000 resolvase; Plasmid F CDS6415 552 - 0.445652
tnpX RecName: Full=Putative transposon gamma-delta 80.3 kDa protein; AltName: Full=Transposon Tn1000 protein TnpX; Plasmid F CDS4303 2097 - 0.343348
traA prepropilinRecName: Full=Pilin; AltName: Full=F-pilin; Flags: Precursor; Plasmid F CDS68265 366 + 0.516393
traB RecName: Full=Protein TraB; Plasmid F CDS70259 1428 + 0.572829
traC RecName: Full=Protein TraC; Plasmid F CDS73741 2628 + 0.540715
traD RecName: Full=Coupling protein TraD; AltName: Full=DNA transport protein TraD; Plasmid F CDS89804 2154 + 0.52182
traE RecName: Full=Protein TraE; Plasmid F CDS68978 567 + 0.469136
traF RecName: Full=Protein TraF; Flags: Precursor; Plasmid F CDS81068 774 + 0.509044
traG RecName: Full=Protein TraG; Contains: RecName: Full=Protein TraG*; Plasmid F CDS85425 2817 + 0.503727
traH RecName: Full=Protein TraH; Flags: Precursor; Plasmid F CDS84052 1377 + 0.51634
traI RecName: Full=Multifunctional conjugation protein TraI; Includes: RecName: Full=DNA relaxase TraI; EC=5.99.1.2; AltName: Full=DNA nickase TraI; AltName: Full=Transesterase TraI; Includes: RecName: Full=DNA helicase I; EC=3.6.4.12; Plasmid F CDS92673 5271 + 0.596282
traJ RecName: Full=Protein TraJ; Plasmid F CDS67049 690 + 0.334783
traK RecName: Full=TraK lipoprotein; Flags: Precursor; Plasmid F CDS69531 729 + 0.569273
traL RecName: Full=Protein TraL; Plasmid F CDS68645 312 + 0.471154
traM RecName: Full=Relaxosome protein TraM; Plasmid F CDS66479 384 + 0.385417
traN RecName: Full=Protein TraN; Flags: Precursor; Plasmid F CDS79013 1809 + 0.525152
traP RecName: Full=Protein TraP; Plasmid F CDS71676 591 + 0.502538
traQ RecName: Full=Protein TraQ; Plasmid F CDS82601 285 + 0.533333
traR RecName: Full=Protein TraR; Plasmid F CDS73360 222 + 0.441441
traS surface exclusion protienRecName: Full=Protein TraS; Plasmid F CDS88274 522 + 0.346743
traT surface exclusion protienRecName: Full=TraT complement resistance protein; Flags: Precursor; Plasmid F CDS88817 735 + 0.502041
traU RecName: Full=Protein TraU; Flags: Precursor; Plasmid F CDS77377 993 + 0.55287
traV RecName: Full=Protein TraV; Flags: Precursor; Plasmid F CDS72710 516 + 0.532946
traW RecName: Full=Protein TraW; Flags: Precursor; Plasmid F CDS76748 633 + 0.595577
traX RecName: Full=Protein TraX; Plasmid F CDS97963 747 + 0.579652
traY RecName: Full=Relaxosome protein TraY; Plasmid F CDS67837 396 + 0.381313
trbA RecName: Full=Protein TrbA; Plasmid F CDS81857 348 + 0.41092
trbB RecName: Full=Protein TrbB; Flags: Precursor; Plasmid F CDS82872 546 + 0.567766
trbC RecName: Full=Periplasmic protein TrbC; Flags: Precursor; Plasmid F CDS78378 639 + 0.552426
trbD RecName: Full=Protein TrbD; Plasmid F CDS72253 198 + 0.409091
trbE RecName: Full=Protein TrbE; Plasmid F CDS80845 261 + 0.409962
trbF RecName: Full=Protein TrbF; Plasmid F CDS83675 381 + 0.380577
trbG RecName: Full=Protein TrbG; Plasmid F CDS72462 252 + 0.424603
trbH RecName: Full=Protein TrbH; Plasmid F CDS91957 720 + 0.490278
trbI RecName: Full=Protein TrbI; Plasmid F CDS76365 387 + 0.576227
trbJ RecName: Full=Protein TrbJ; Plasmid F CDS83347 342 + 0.45614
yaaA RecName: Full=Transposase InsE for insertion sequence IS3fA; Plasmid F CDS66 300 + 0.5
yaaB RecName: Full=Transposase InsF for insertion sequence IS3fA; Plasmid F CDS362 867 + 0.551326
yacA RecName: Full=Uncharacterized protein YuaA; Plasmid F CDS2110 441 + 0.419501
ybaA RecName: Full=Uncharacterized HTH-type transcriptional regulator YuaB; Plasmid F CDS10729 1062 - 0.308851
ybbA RecName: Full=Uncharacterized protein YuaC; Plasmid F CDS11900 414 - 0.301932
ybcA RecName: Full=Uncharacterized membrane protein YuaD; Plasmid F CDS12477 564 - 0.315603
ybdA RecName: Full=Uncharacterized protein YuaE; Flags: Precursor; Plasmid F CDS13047 414 - 0.335749
ybdB RecName: Full=Uncharacterized membrane protein YuaF; Plasmid F CDS13453 603 - 0.280265
ybfA RecName: Full=Transposase InsE for insertion sequence IS3fB; Plasmid F CDS15158 300 + 0.503333
ybfB RecName: Full=Transposase InsF for insertion sequence IS3fB; Plasmid F CDS15454 867 + 0.546713
ybgA RecName: Full=Uncharacterized protein YuaG; Plasmid F CDS16317 255 - 0.517647
ybhA RecName: Full=Uncharacterized protein YuaH; Plasmid F CDS17216 333 + 0.558559
ybhB RecName: Full=Transposase InsD for insertion element IS2 on F plasmid; Plasmid F CDS17673 906 - 0.550773
ybiA RecName: Full=Transposase InsC for insertion element IS2 on F plasmid; Plasmid F CDS18536 411 - 0.508516
ybiB RecName: Full=Uncharacterized protein YuaK; Plasmid F CDS18858 285 + 0.494737
ybjA RecName: Full=Uncharacterized protein YuaL; Plasmid F CDS19245 210 + 0.395238
ycaA RecName: Full=Uncharacterized protein YuaM; Plasmid F CDS20096 696 - 0.28592
ycbA RecName: Full=Uncharacterized protein YuaN; Plasmid F CDS21222 234 - 0.311966
ycbB RecName: Full=Uncharacterized protein YuaO; Flags: Precursor; Plasmid F CDS21541 5277 - 0.406291
ycgA RecName: Full=Uncharacterized membrane protein YuaP; Plasmid F CDS26990 270 + 0.285185
ychA RecName: Full=Uncharacterized protein YuaQ; Plasmid F CDS27486 4116 - 0.447522
yddA RecName: Full=Putative hydrolase YuaR; EC=3.4.-.-; Flags: Precursor; Plasmid F CDS33362 1500 + 0.419333
ydfA RecName: Full=Uncharacterized protein YuaS; Plasmid F CDS35217 288 + 0.5
ydhA RecName: Full=Uncharacterized protein YuaT; Plasmid F CDS37942 462 - 0.493506
ydiA RecName: Full=Uncharacterized protein YuaU; Plasmid F CDS38460 642 - 0.524922
ydjA RecName: Full=Uncharacterized protein YuaV; Plasmid F CDS39088 231 + 0.536797
yeaA RecName: Full=Uncharacterized protein YuaW; Plasmid F CDS40634 237 - 0.50211
yebA RecName: Full=Uncharacterized protein YuaX; Plasmid F CDS41216 291 + 0.457045
yebB RecName: Full=Uncharacterized protein YuaY; Plasmid F CDS41496 900 + 0.472222
yfcA RecName: Full=Uncharacterized protein YuaZ; Plasmid F CDS52569 273 + 0.608059
yfcB RecName: Full=Uncharacterized protein YubA; Plasmid F CDS52855 507 + 0.552268
yfdA RecName: Full=Uncharacterized protein YubB; Plasmid F CDS53343 438 + 0.538813
yfdB RecName: Full=Uncharacterized protein YubC; Plasmid F CDS53784 306 + 0.640523
yfeA RecName: Full=Putative methylase YubD; EC=2.1.1.-; Plasmid F CDS54166 684 + 0.570175
yfeB RecName: Full=Uncharacterized protein YubE; Plasmid F CDS54850 222 + 0.536036
yffA RecName: Full=Uncharacterized protein YubF; Plasmid F CDS55085 435 + 0.581609
yffB RecName: Full=Uncharacterized protein YubG; Plasmid F CDS55565 777 + 0.608752
yfgA RecName: Full=Uncharacterized protein YubH; Flags: Precursor; Plasmid F CDS56429 312 + 0.644231
yfgB RecName: Full=Putative antirestriction protein YubI; Plasmid F CDS56755 426 + 0.549296
yfhA RecName: Full=Uncharacterized protein YubJ; Plasmid F CDS57227 423 + 0.55792
yfhB RecName: Full=Uncharacterized serine-rich protein YubK; Flags: Precursor; Plasmid F CDS57956 399 + 0.60401
yfjA RecName: Full=UPF0401 protein YubL; Plasmid F CDS59233 240 + 0.508333
yfjB RecName: Full=Uncharacterized protein YubM; Plasmid F CDS59538 1959 + 0.581419
ygdA RecName: Full=Uncharacterized protein YubN; Plasmid F CDS63372 318 - 0.622642
ygeA RecName: Full=Uncharacterized protein YubO; Plasmid F CDS64032 288 + 0.527778
ygeB RecName: Full=UPF0380 protein YubP; Plasmid F CDS64438 822 + 0.442822
ygfA RecName: Full=X polypeptide; AltName: Full=ORF 19; AltName: Full=ORF169; AltName: Full=P19 protein; Plasmid F CDS65556 510 - 0.452941