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2024-05-02 01:03:53

Gene list

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Organism: Plasmid pB3

Number of genes found: 119

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Hide UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Plasmid pB3
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA pB3 repeat_unit19027 5 + 0.2
NA pB3 repeat_unit20863 5 + 0.6
NA pB3 repeat_unit29098 7 + 0.714286
NA pB3 repeat_unit30017 7 + 0.285714
NA pB3 repeat_unit26679 8 + 0.5
NA conserved hypothetical proteinSubName: Full=Uncharacterized protein; pB3 CDS31958 288 + 0.607639
NA pB3 repeat_region19055 86 + 0.604651
NA pB3 repeat_unit27612 7 + 0.714286
NA pB3 repeat_region32282 98 + 0.479592
NA pB3 repeat_region33285 105 + 0.6
NA pB3 repeat_unit29964 7 + 0.428571
NA pB3 repeat_region19032 14383 + 0.571091
NA pB3 repeat_unit33285 5 + 0.6
NA pB3 repeat_unit20717 30 + 0.4
NA putative acetyltransferase; hypothetical proteinSubName: Full=Acetyltransferase; SubName: Full=Acetyltransferase, gnat family; SubName: Full=GCN5-like N-acetyltransferase; SubName: Full=Puromycin N-acetyltransferase-like protein; SubName: Full=Putative acetyltransferase; SubName: Full=Putative acetyltransferase protein; SubName: Full=Uncharacterized protein; pB3 CDS31434 501 + 0.650699
NA pB3 repeat_unit33260 25 + 0.44
NA pB3 repeat_region25859 820 + 0.52439
NA pB3 repeat_region21294 820 + 0.52439
NA pB3 repeat_region32380 880 + 0.605682
NA pB3 repeat_unit29161 7 + 0.428571
NA pB3 repeat_region33415 5 + 0.2
NA pB3 repeat_unit26665 14 + 0.5
NA pB3 repeat_unit22100 14 + 0.5
NA pB3 repeat_region20024 61 + 0.639344
NA pB3 repeat_unit32257 25 + 0.44
NA pB3 repeat_unit25859 14 + 0.5
NA pB3 repeat_region20868 12417 + 0.572924
NA pB3 repeat_unit19032 23 + 0.521739
NA pB3 repeat_unit20868 25 + 0.52
NA pB3 repeat_region18918 114 + 0.570175
NA pB3 repeat_unit21286 8 + 0.5
NA pB3 repeat_unit21294 14 + 0.5
NA pB3 repeat_unit32380 14 + 0.5
NA pB3 repeat_unit33246 14 + 0.5
NA pB3 repeat_unit33390 25 + 0.52
NA pB3 repeat_region21294 5385 + 0.569174
'intI1 pB3 pseudo21070 222 - 0.612613
aadA2 streptomycin 3''-adenyltransferaseSubName: Full=Streptomycin 3-adenyltransferase; pB3 CDS29171 792 + 0.518939
cmlA1 chloramphenicol efflux protein precursorSubName: Full=Chloramphenicol efflux protein; Flags: Precursor; pB3 CDS27819 1260 + 0.556349
cmlA1 chloramphenicol efflux protein pB3 mat_peptide27954 1122 + 0.562389
cmlA1 pB3 sig_peptide27819 135 + 0.511111
incC1 IncC1 partitioning proteinSubName: Full=IncC1 partitioning protein; pB3 CDS51354 1077 - 0.638812
incC2 IncC2 inclusion membrane proteinSubName: Full=IncC2 inclusion membrane protein; pB3 CDS51354 765 - 0.64183
intI1' pB3 pseudo26679 798 - 0.609023
kfrA KfrA proteinSubName: Full=KfrA protein; pB3 CDS49098 1032 - 0.75
klcA KlcA proteinSubName: Full=KlcA; SubName: Full=KlcA protein; SubName: Full=KlcA:antirestriction protein; SubName: Full=Plasmid maintenance protein; pB3 CDS55739 429 - 0.689977
klcB KlcB proteinSubName: Full=KlcB protein; pB3 CDS54479 1209 - 0.705542
klcC (korC) KorC proteinSubName: Full=KorC protein; pB3 CDS54205 258 - 0.693798
kleA KleA proteinSubName: Full=KleA protein; pB3 CDS53811 237 - 0.624473
kleB KleB proteinSubName: Full=KleB protein; pB3 CDS53537 216 - 0.62963
kleE KleE proteinSubName: Full=KleE protein; pB3 CDS53063 387 - 0.630491
kleF KleF proteinSubName: Full=KleF protein; pB3 CDS52531 531 - 0.691149
korA transcriptional repressor KorASubName: Full=Transcriptional repressor KorA; pB3 CDS52115 303 - 0.630363
korB KorB DNA binding proteinSubName: Full=KorB; SubName: Full=KorB DNA binding protein; SubName: Full=KorB protein; SubName: Full=KorB repressor and partitioning protein; SubName: Full=KorB:transcriptional repressor protein/plasmid partitioning protein; SubName: Full=Plasmid partitioning protein; SubName: Full=Transcriptional repressor protein/plasmid partitioning protein; pB3 CDS50308 1050 - 0.671429
nps-1 beta-lactamase LCR-1 precursorSubName: Full=Beta-lactamase LCR-1; pB3 CDS19208 783 + 0.514687
parA plasmid stablization protein ParA, resolvaseSubName: Full=Plasmid stablization protein ParA, resolvase; SubName: Full=Resolvase; pB3 CDS18099 660 - 0.684848
qacEdelta1 qacEdelta1 quaternary ammonium-compound resistance proteinSubName: Full=Efflux protein; SubName: Full=QacEdelta1; SubName: Full=QacEdelta1 multidrug exporter; SubName: Full=QacEdelta1 protein; SubName: Full=QacEdelta1, multidrug efflux protein; SubName: Full=Quaternary ammonium compound resistance protein; SubName: Full=Quaternary ammonium-compound resistance protein; SubName: Full=Small exporter protein; SubName: Full=Small multidrug resistance protein; pB3 CDS30126 348 + 0.5
ssb single strand DNA binding proteinRecName: Full=Single-stranded DNA-binding protein; pB3 CDS2760 342 - 0.593567
sul1 Sul1 dihydropteroate synthaseSubName: Full=Dihydropteroate synthase; EC=2.5.1.15; SubName: Full=Dihydropteroate synthase Sul1; SubName: Full=Dihydropteroate synthetase; SubName: Full=Dihydropteroate synthetase type 1; SubName: Full=Sul1; SubName: Full=Sul1 dihydropteroate synthase; SubName: Full=SulI; SubName: Full=Sulphonamide resistance protein; pB3 CDS30467 840 + 0.616667
tetA(C) tetracycline efflux protein (class C)SubName: Full=TetA(C) protein; SubName: Full=Tetracycline efflux protein; SubName: Full=Tetracycline efflux protein (Class C); pB3 CDS23147 1191 - 0.61461
tetR tetracyclin repressor proteinSubName: Full=Tetracyclin repressor protein; SubName: Full=Tetracycline repressor protein; pB3 CDS24430 660 + 0.590909
tniC putative TniC resolvaseSubName: Full=Putative TniC resolvase; pB3 CDS20085 624 - 0.629808
tnpA IS6100 transposaseSubName: Full=IS6100 family transposase; SubName: Full=IS6100 transposase; SubName: Full=TnpA, transposase; SubName: Full=Transposase; pB3 CDS32411 795 + 0.610063
tnpA (IS26) TnpA transposaseSubName: Full=IS26 transposase; SubName: Full=TnpA transposase; pB3 CDS21357 705 + 0.531915
tnpA (IS26, second copy) TnpA transposaseSubName: Full=IS26 transposase; SubName: Full=TnpA transposase; pB3 CDS25922 705 + 0.531915
traC TraC primaseSubName: Full=TraC primase; pB3 CDS33827 4347 - 0.68438
traD TraD proteinSubName: Full=Conjugative transfer protein; SubName: Full=DNA processing protein; SubName: Full=TraD; SubName: Full=TraD protein; SubName: Full=TraD: DNA processing protein; pB3 CDS38177 390 - 0.723077
traE DNA topoisomeraseRecName: Full=DNA topoisomerase; EC=5.99.1.2; pB3 CDS38588 2064 - 0.67345
traF TraF maturation peptidase precursorSubName: Full=TraF maturation peptidase; Flags: Precursor; pB3 CDS40664 537 - 0.662942
traF TraF maturation peptidase pB3 mat_peptide40667 452 - 0.654867
traF pB3 sig_peptide41117 84 - 0.72619
traG pB3 sig_peptide42997 114 - 0.657895
traG DNA transport protein precursorSubName: Full=DNA transport protein; Flags: Precursor; pB3 CDS41197 1914 - 0.664054
traG DNA transport protein pB3 mat_peptide41200 1797 - 0.664997
traH TraH proteinSubName: Full=TraH protein; pB3 CDS43409 393 - 0.671756
traI TraI DNA-relaxaseSubName: Full=TraI DNA-relaxase; Flags: Precursor; pB3 CDS43107 2241 - 0.66622
traJ oriT binding protein TraJSubName: Full=OriT binding protein TraJ; pB3 CDS45382 375 - 0.669333
traK oriT binding protein TraKSubName: Full=Conjugative transfer protein; SubName: Full=DNA processing protein; SubName: Full=OriT binding protein; SubName: Full=OriT binding protein TraK; SubName: Full=TraK; SubName: Full=TraK protein; SubName: Full=TraK: DNA processing protein, oriT binding protein; pB3 CDS46131 399 + 0.629073
traL TraL origin of transfer (oriT) proteinSubName: Full=Conjugative transfer protein; SubName: Full=DNA processing protein; SubName: Full=TraL; SubName: Full=TraL origin of transfer (OriT) protein; SubName: Full=TraL protein; SubName: Full=TraL:DNA processing protein; pB3 CDS46529 726 + 0.625344
traM TraM proteinSubName: Full=Conjugative transfer protein; SubName: Full=DNA processing protein; SubName: Full=TraM; SubName: Full=TraM protein; SubName: Full=TraM: DNA processing protein; pB3 CDS47254 441 + 0.671202
traN TraN proteinSubName: Full=TraN protein; pB3 CDS47897 660 - 0.687879
traO TraO proteinSubName: Full=Conjugative transfer protein; SubName: Full=KfrB; SubName: Full=KfrB protein; SubName: Full=KfrB:stable inheritance protein; SubName: Full=Stable inheritance protein; SubName: Full=TraO protein; pB3 CDS48579 348 - 0.58908
trbA TrbA regulator proteinSubName: Full=Conjugative transfer protein; SubName: Full=TrbA regulator protein; pB3 CDS3215 363 + 0.586777
trbB TrbB secretion system proteinSubName: Full=Conjugative transfer protein; SubName: Full=TrbB secretion system protein; pB3 CDS3885 966 + 0.595238
trbC TrbC conjugal transfer protein pB3 mat_peptide4972 354 + 0.669492
trbC pB3 sig_peptide4864 108 + 0.62963
trbC TrbC conjugal transfer protein precursorSubName: Full=Conjugative transfer protein; SubName: Full=TrbC conjugal transfer protein; Flags: Precursor; pB3 CDS4864 465 + 0.655914
trbD TrbD conjugal transfer proteinSubName: Full=Conjugative transfer protein; SubName: Full=Mating pair formation protein; SubName: Full=TrbD; SubName: Full=TrbD conjugal transfer protein; SubName: Full=TrbD protein; SubName: Full=TrbD:mating pair formation protein; pB3 CDS5332 312 + 0.634615
trbE pB3 sig_peptide5640 78 + 0.551282
trbE TrbE conjugal transfer protein pB3 mat_peptide5718 2478 + 0.642857
trbE TrbE conjugal transfer protein precursorSubName: Full=Conjugative transfer protein; SubName: Full=TrbE conjugal transfer protein; Flags: Precursor; pB3 CDS5640 2559 + 0.639703
trbF TrbF conjugal transfer proteinSubName: Full=Conjugative transfer protein; SubName: Full=TrbF conjugal transfer protein; pB3 CDS8195 783 + 0.660281
trbG TrbG conjugal transfer protein pB3 mat_peptide9060 832 + 0.640625
trbG pB3 sig_peptide8995 66 + 0.636364
trbG TrbG conjugal transfer protein precursorSubName: Full=Conjugative transfer protein; SubName: Full=TrbG conjugal transfer protein; Flags: Precursor; pB3 CDS8995 900 + 0.638889
trbH TrbH conjugal transfer protein pB3 mat_peptide9990 393 + 0.717557
trbH TrbH conjugal transfer protein precursorSubName: Full=TrbH conjugal transfer protein; Flags: Precursor; pB3 CDS9891 495 + 0.709091
trbH pB3 sig_peptide9891 99 + 0.686869
trbI TrbI conjugal transfer proteinSubName: Full=Conjugative transfer protein; SubName: Full=TrbI; SubName: Full=TrbI conjugal transfer protein; pB3 CDS10390 1422 + 0.677215
trbJ TrbJ conjugal transfer/entry exclusion protein precursorSubName: Full=Conjugative transfer protein; SubName: Full=TrbJ conjugal transfer/entry exclusion protein; Flags: Precursor; pB3 CDS11832 765 + 0.606536
trbJ pB3 sig_peptide11832 81 + 0.54321
trbJ TrbJ conjugal transfer/entry exclusion protein pB3 mat_peptide11913 681 + 0.61674
trbK TrbK entry exclusion protein pB3 mat_peptide12693 138 + 0.608696
trbK pB3 sig_peptide12606 87 + 0.666667
trbK TrbK entry exclusion protein precursorSubName: Full=Conjugative transfer entry exclusion protein; SubName: Full=TrbK entry exclusion protein; Flags: Precursor; pB3 CDS12606 228 + 0.627193
trbL TrbL plasmid conjugal transfer protein precursorSubName: Full=Conjugative transfer protein; SubName: Full=TrbL plasmid conjugal transfer protein; Flags: Precursor; pB3 CDS12844 1731 + 0.679954
trbL TrbL plasmid conjugal transfer protein pB3 mat_peptide12925 1647 + 0.686096
trbL pB3 sig_peptide12844 81 + 0.580247
trbM TrbM conjugal transfer protein pB3 mat_peptide14664 513 + 0.670565
trbM pB3 sig_peptide14592 72 + 0.666667
trbM pB3_15 TrbM conjugal transfer protein precursorSubName: Full=Conjugative transfer protein; SubName: Full=TrbM conjugal transfer protein; Flags: Precursor; pB3 CDS14592 588 + 0.668367
trbN TrbN, putative muramidaseSubName: Full=TrbN, putative muramidase; pB3 CDS15193 636 + 0.690252
trbO TrbO conjugal transfer proteinSubName: Full=Mating pair formation protein; SubName: Full=TrbO; SubName: Full=TrbO conjugal transfer protein; SubName: Full=TrbO protein; pB3 CDS15857 267 + 0.640449
trbP TrbP conjugal transfer proteinSubName: Full=TrbP conjugal transfer protein; pB3 CDS16123 699 + 0.680973
trfA replication initiation proteinSubName: Full=Replication initiation protein; SubName: Full=TrfA; pB3 CDS1492 1221 - 0.66421
upf30.5 pB3 sig_peptide16837 66 + 0.621212
upf30.5 putative outer membrane protein precursorSubName: Full=Putative outer membrane protein; Flags: Precursor; pB3 CDS16837 432 + 0.675926
upf30.5 putative outer membrane protein pB3 mat_peptide16903 363 + 0.688705
upf31.0 putative site-specific DNA-methyltransferaseSubName: Full=Putative site-specific DNA-methyltransferase; pB3 CDS17423 675 + 0.657778