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2024-05-08 09:29:01

Gene list

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Organism: Agrobacterium tumefaciens

Number of genes found: 172

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Hide UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Agrobacterium tumefaciens
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA Ti misc_feature1 25 + 0.32
NA Ti misc_feature14994 24 + 0.416667
NA Ti misc_feature22888 29 + 0.241379
NA Ti misc_feature13154 24 + 0.375
NA Ti misc_feature13187 30 + 0.366667
NA Ti misc_feature182259 1460 + 0.60274
NA Ti misc_feature22855 24 + 0.416667
IS71 Ti repeat_region161652 4944 + 0.602953
agaA agaASubName: Full=AgaA; Ti CDS77313 1530 - 0.543791
agaB agaBSubName: Full=AgaB; Ti CDS79693 972 - 0.5607
agaC agaCSubName: Full=AgaC; Ti CDS78869 828 - 0.570048
agaD agaDSubName: Full=AgaD; Ti CDS80664 1710 - 0.551462
agaE agaESubName: Full=AgaE; Ti CDS82856 1314 + 0.575342
agaF agaFSubName: Full=AgaF; Ti CDS84210 2055 + 0.574696
agaG agaGSubName: Full=AgaG; Ti CDS86261 1653 + 0.579552
agcA agcASubName: Full=AgcA; SubName: Full=Catabolic mannopine cyclase; Ti CDS66829 1209 - 0.588089
ags agsSubName: Full=Ags; Ti CDS21294 1188 - 0.530303
agtA agtASubName: Full=AgtA; Ti CDS65750 1080 - 0.597222
agtB agtBSubName: Full=AgtB; Ti CDS64634 1095 - 0.556164
agtC agtCSubName: Full=AgtC; Ti CDS63696 942 - 0.565817
agtD agtDSubName: Full=AgtD; Ti CDS62854 846 - 0.552009
apeA apeASubName: Full=ApeA; Ti CDS23691 1404 - 0.559117
gene 3' gene 3' proteinSubName: Full=Gene 3 protein; SubName: Full=Ti plasmid pTi15955 T-DNA region; Ti CDS16945 696 + 0.472701
gene 4' gene 4' proteinSubName: Full=Gene 4 protein; SubName: Full=Ti plasmid pTi15955 T-DNA region; Ti CDS15793 414 + 0.475845
gene 5 gene 5 proteinRecName: Full=Uncharacterized protein 1; AltName: Full=Gene 5 protein; Ti CDS754 519 + 0.427746
gene 7 gene 7 proteinRecName: Full=Uncharacterized protein 7; AltName: Full=Open reading frame 3; Ti CDS2000 381 - 0.430446
hupT hupTSubName: Full=HupT; Ti CDS26747 279 - 0.577061
iaaH iaaHRecName: Full=Indoleacetamide hydrolase; Short=IAH; EC=3.5.1.-; AltName: Full=Indole-3-acetamide hydrolase; Ti CDS3153 1404 - 0.507123
iaaM iaaMRecName: Full=Tryptophan 2-monooxygenase; EC=1.13.12.3; Ti CDS4902 2268 + 0.495591
ipt iptSubName: Full=Ipt; Ti CDS7864 723 + 0.500692
mas1' mas1'SubName: Full=Mas1; Ti CDS19708 1293 + 0.509667
mas2' mas2'SubName: Full=Mas2; Ti CDS18142 1083 - 0.506002
mclA mclASubName: Full=MclA; Ti CDS60058 2220 - 0.541441
mclB mclBSubName: Full=MclB; Ti CDS54511 516 - 0.579457
moaA moaASubName: Full=MoaA; Ti CDS94865 1569 + 0.544933
moaB moaBSubName: Full=MoaB; Ti CDS91164 942 + 0.553079
moaC moaCSubName: Full=MoaC; Ti CDS92102 882 + 0.564626
moaD moaDSubName: Full=MoaD; Ti CDS92983 1767 + 0.577816
moaR moaRSubName: Full=MoaR; Ti CDS89408 867 - 0.538639
mocA mocASubName: Full=MocA; Ti CDS74042 1065 + 0.57277
mocB mocBSubName: Full=MocB; Ti CDS72198 1821 + 0.573861
mocC mocCSubName: Full=MocC; Ti CDS71425 747 + 0.56091
mocD mocDSubName: Full=MocD; Ti CDS68914 1023 - 0.562072
mocE mocESubName: Full=MocE; Ti CDS68086 819 - 0.58486
mocR mocRSubName: Full=MocR; Ti CDS70181 987 + 0.569402
mocS mocSSubName: Full=MocS; Ti CDS75445 945 + 0.55873
motA motASubName: Full=MotA; Ti CDS58897 1065 - 0.562441
motB motBSubName: Full=MotB; Ti CDS57660 1185 - 0.542616
motC motCSubName: Full=MotC; Ti CDS56771 885 - 0.535593
motD motDSubName: Full=MotD; Ti CDS55953 822 - 0.525547
msh mshSubName: Full=Msh; Ti CDS44218 948 - 0.595992
occJ occJRecName: Full=Octopine-binding periplasmic protein; Flags: Precursor; Ti CDS50202 831 - 0.570397
occM occMRecName: Full=Octopine transport system permease protein OccM; Ti CDS51869 738 - 0.555556
occP occPRecName: Full=Octopine permease ATP-binding protein P; Ti CDS51088 789 - 0.607098
occQ occQRecName: Full=Octopine transport system permease protein OccQ; Ti CDS52606 714 - 0.60084
occR occRRecName: Full=Octopine catabolism/uptake operon regulatory protein OccR; Ti CDS53469 897 + 0.571906
ocd ocdSubName: Full=Ocd; Ti CDS45496 1071 - 0.563025
ocs ocsSubName: Full=Ocs; Ti CDS11651 1077 - 0.513463
ons onsSubName: Full=Ons; Ti CDS9089 576 + 0.46875
ooxA ooxASubName: Full=OoxA; Ti CDS47202 1512 - 0.609788
ooxB ooxBSubName: Full=OoxB; SubName: Full=OxxB; Ti CDS49014 1116 - 0.581541
ophA ophASubName: Full=OphA; Ti CDS42632 1560 - 0.573077
ophB ophBSubName: Full=OphB; Ti CDS41574 1005 - 0.59204
ophC ophCSubName: Full=OphC; Ti CDS40765 813 - 0.592866
ophD ophDSubName: Full=OphD; Ti CDS39989 780 - 0.603846
ophE ophESubName: Full=OphE; Ti CDS39168 819 - 0.587302
repA repASubName: Full=RepA; Ti CDS107313 1218 + 0.54844
repB repBSubName: Full=RepB; Ti CDS108727 1044 + 0.537356
repC repCSubName: Full=RepC; Ti CDS109976 1320 + 0.570455
tml tmlSubName: Full=Tml; Ti CDS10150 624 - 0.488782
traA traARecName: Full=Conjugal transfer protein TraA; Ti CDS30831 3303 + 0.606116
traB traBSubName: Full=TraB; Ti CDS34650 1227 + 0.612877
traC traCRecName: Full=Conjugal transfer protein TraC; Ti CDS30281 297 - 0.62963
traD traDRecName: Full=Conjugal transfer protein TraD; Ti CDS30061 246 - 0.609756
traF traFRecName: Full=Conjugal transfer protein TraF; Flags: Precursor; Ti CDS34130 531 + 0.606403
traG traGRecName: Full=Conjugal transfer protein TraG; Ti CDS28152 1923 - 0.605824
traH traHSubName: Full=TraH; Ti CDS35893 630 + 0.584127
traI traIRecName: Full=Acyl-homoserine-lactone synthase; EC=2.3.1.184; AltName: Full=Autoinducer synthesis protein TraI; Ti CDS106314 639 - 0.604069
traM traMRecName: Full=Transcriptional repressor TraM; Ti CDS37666 309 + 0.543689
traR traRRecName: Full=Transcriptional activator protein TraR; Ti CDS38453 705 - 0.592908
trbB trbBRecName: Full=Conjugal transfer protein TrbB; Ti CDS105346 972 - 0.622428
trbC trbCRecName: Full=Conjugal transfer protein TrbC; Ti CDS104952 405 - 0.632099
trbD trbDRecName: Full=Conjugal transfer protein TrbD; Ti CDS104660 300 - 0.596667
trbE trbERecName: Full=Conjugal transfer protein TrbE; Flags: Precursor; Ti CDS102187 2463 - 0.611043
trbF trbFRecName: Full=Conjugal transfer protein TrbF; Ti CDS99324 663 - 0.594269
trbG trbGRecName: Full=Conjugal transfer protein TrbG; Flags: Precursor; Ti CDS98453 855 - 0.59883
trbH trbHRecName: Full=Conjugal transfer protein TrbH; Flags: Precursor; Ti CDS97977 480 - 0.625
trbI trbIRecName: Full=Conjugal transfer protein TrbI; Ti CDS96666 1302 - 0.597542
trbJ trbJRecName: Full=Conjugal transfer protein TrbJ; Flags: Precursor; Ti CDS101406 810 - 0.580247
trbK trbKRecName: Full=Conjugal transfer protein TrbK; Flags: Precursor; Ti CDS101182 228 - 0.627193
trbL trbLRecName: Full=Conjugal transfer protein TrbL; Ti CDS100001 1188 - 0.627104
trlR trlRSubName: Full=TrlR; Ti CDS55185 639 - 0.58216
virA virASubName: Full=VirA; SubName: Full=VirA protein; Ti CDS145694 2490 + 0.497992
virB1 virB1SubName: Full=VirB1; Ti CDS151232 720 + 0.526389
virB10 virB10SubName: Full=VirB10; Ti CDS158463 1134 + 0.553792
virB11 virB11SubName: Full=VirB11; Ti CDS159636 1032 + 0.525194
virB2 virB2SubName: Full=VirB2; Ti CDS151966 366 + 0.581967
virB3 virB3SubName: Full=VirB3; Ti CDS152331 327 + 0.550459
virB4 virB4SubName: Full=VirB4; Ti CDS152657 2370 + 0.534599
virB5 virB5SubName: Full=VirB5; Ti CDS155041 663 + 0.546003
virB6 virB6SubName: Full=VirB6; Ti CDS155800 888 + 0.525901
virB7 virB7RecName: Full=Outer membrane lipoprotein virB7; Flags: Precursor; Ti CDS156721 168 + 0.553571
virB8 virB8SubName: Full=VirB8; Ti CDS156896 693 + 0.544012
virB9 virB9RecName: Full=Protein virB9; Flags: Precursor; Ti CDS157585 882 + 0.539683
virC1 virC1RecName: Full=Protein virC1; Ti CDS167280 696 - 0.514368
virC2 virC2RecName: Full=Protein virC2; Ti CDS166669 609 - 0.545156
virD1 virD1RecName: Full=T-DNA border endonuclease virD1; EC=3.1.-.-; Ti CDS168244 444 + 0.531532
virD2 virD2RecName: Full=T-DNA border endonuclease virD2; EC=3.1.-.-; Ti CDS168721 1275 + 0.549804
virD3 virD3SubName: Full=VirD3; SubName: Full=VirD3 protein; Ti CDS170015 606 + 0.537954
virD4 virD4SubName: Full=VirD4; SubName: Full=VirD4 protein; Ti CDS170649 1971 + 0.515982
virD5 virD5SubName: Full=VirD5; SubName: Full=VirD5 protein; Ti CDS172711 2502 + 0.527178
virE1 virE1RecName: Full=Protein virE1; Ti CDS175665 198 + 0.515152
virE2 virE2RecName: Full=Single-strand DNA-binding protein; Ti CDS175867 1602 + 0.51186
virE3 virE3SubName: Full=VirE3; SubName: Full=VirE3 protein; Ti CDS177534 2019 + 0.521545
virF virFSubName: Full=F-box protein; SubName: Full=VirF; Ti CDS184764 609 + 0.487685
virG virGSubName: Full=VirG; SubName: Full=VirG11 protein; Ti CDS160877 726 + 0.509642
virH1 virH1SubName: Full=VirH1; Ti CDS141158 1269 + 0.533491
virH2 virH2SubName: Full=VirH2; Ti CDS142447 1224 + 0.544935
virJ virJSubName: Full=VirJ; SubName: Full=VirJ protein; Ti CDS148762 768 + 0.497396
virK virKSubName: Full=VirK; SubName: Full=VirK protein; Ti CDS143942 438 + 0.488584
virL virLSubName: Full=VirL; Ti CDS137085 948 + 0.489451
virM virMSubName: Full=VirM; Ti CDS136354 468 + 0.482906
virP virPSubName: Full=VirP; Ti CDS186957 633 + 0.450237
virR virRRecName: Full=Probable S-adenosyl-L-methionine-binding protein VirR; AltName: Full=Protein VirR; Ti CDS188254 528 + 0.543561
ybd Ti repeat_region13244 375 + 0.541333
ybe Ti repeat_region13636 546 + 0.591575
ybf Ti repeat_region14183 484 + 0.586777
ycf ycfSubName: Full=Ycf; Ti CDS25170 849 - 0.551237
ycg ycgSubName: Full=Ycg; Ti CDS26188 498 - 0.634538
ych ychSubName: Full=Ych; Ti CDS27163 258 - 0.581395
yci yciSubName: Full=Yci; Ti CDS27697 315 - 0.552381
ydh ydhSubName: Full=Ydh; Ti CDS37045 285 + 0.561404
yhg yhgSubName: Full=Yhg; Ti CDS76444 777 + 0.559846
yii yiiSubName: Full=Yii; Ti CDS88120 585 + 0.577778
yja yjaSubName: Full=Yja; Ti CDS90352 423 - 0.56974
ylb ylbSubName: Full=Ylb; Ti CDS111566 573 - 0.609075
ylc ylcSubName: Full=Ylc; Ti CDS112679 414 - 0.543478
yld yldSubName: Full=Yld; Ti CDS113363 1092 - 0.605311
yle yleRecName: Full=Ribonuclease VapC; Short=RNase VapC; EC=3.1.-.-; AltName: Full=Toxin VapC; Ti CDS114447 402 - 0.564677
ylf ylfSubName: Full=Ylf; Ti CDS115337 954 + 0.655136
ylg ylgSubName: Full=Ylg; Ti CDS116293 681 + 0.599119
ylh ylhSubName: Full=Ylh; Ti CDS117136 2031 + 0.545544
yli yliSubName: Full=Yli; Ti CDS119291 1143 + 0.531059
yma ymaSubName: Full=Yma; Ti CDS120572 846 + 0.535461
ymb ymbSubName: Full=Ymb; Ti CDS121567 525 + 0.546667
ymc ymcSubName: Full=Ymc; Ti CDS122268 1116 + 0.519713
ymd ymdSubName: Full=Ymd; Ti CDS123380 1338 + 0.581465
yme ymeSubName: Full=Yme; Ti CDS124798 1983 - 0.541099
ymf ymfSubName: Full=Ymf; Ti CDS126780 507 - 0.542406
ymg ymgSubName: Full=Ymg; Ti CDS127283 1167 - 0.552699
ymh ymhSubName: Full=Ymh; Ti CDS128665 801 - 0.545568
ymi ymiSubName: Full=Ymi; Ti CDS129462 204 - 0.588235
ymj ymjSubName: Full=Ymj; Ti CDS129683 390 - 0.569231
yna ynaSubName: Full=Yna; Ti CDS130213 1590 - 0.560377
ynb ynbSubName: Full=Ynb; Ti CDS131811 639 - 0.58216
ync yncSubName: Full=Ync; Ti CDS132665 936 - 0.587607
ynd yndSubName: Full=Ynd; Ti CDS133590 630 - 0.58254
yne yneSubName: Full=Yne; Ti CDS135039 423 + 0.460993
ynf ynfSubName: Full=Ynf; Ti CDS135772 147 + 0.517007
yng yngSubName: Full=Yng; Ti CDS135905 180 + 0.45
ynh ynhSubName: Full=Ynh; Ti CDS138463 480 + 0.572917
yni yniSubName: Full=Yni; Ti CDS138926 354 + 0.581921
ynj Ti repeat_region139736 996 + 0.587349
yoe Ti repeat_region144428 906 + 0.556291
yoi Ti repeat_region148405 144 + 0.548611
ypa Ti repeat_region150015 830 + 0.510843
ysa ysaRecName: Full=Integration host factor subunit beta; Short=IHF-beta; Ti CDS180164 309 + 0.556634
ysb ysbSubName: Full=CspA-like protein; SubName: Full=Ysb; Ti CDS180902 303 + 0.613861
yse yseSubName: Full=TraF-like protein; SubName: Full=Yse; Ti CDS183715 531 + 0.623352
ysf ysfSubName: Full=Ysf; Ti CDS185774 297 + 0.548822
ysg ysgSubName: Full=Ysg; Ti CDS186067 243 + 0.452675
ysj ysjSubName: Full=Ysj; Ti CDS188974 642 - 0.580997