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2024-05-19 10:57:40

Gene list

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Organism: Novosphingobium aromaticivorans, F199
Gene type: CDS

Number of genes found: 186

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Novosphingobium aromaticivorans, F199
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
bphA1a large subunit aromatic oxygenasepNL1 CDS135798 1353 + 0.623799
bphA1b large subunit aromatic oxygenasepNL1 CDS137696 1368 + 0.61038
bphA1c large subunit aromatic oxygenasepNL1 CDS162302 1263 + 0.60966
bphA1d large subunit aromatic oxygenasepNL1 CDS156111 1281 - 0.618267
bphA1e large subunit aromatic oxygenasepNL1 CDS129441 1176 - 0.593537
bphA1f large subunit naph/bph dioxygenasepNL1 CDS13952 1380 - 0.584058
bphA2a small subunit aromatic oxygenasepNL1 CDS137143 528 + 0.632576
bphA2b large subunit aromatic oxygenasepNL1 CDS139078 552 + 0.581522
bphA2c small subunit aromatic oxygenasepNL1 CDS161789 489 + 0.562372
bphA2d small subunit aromatic oxygenasepNL1 CDS155626 489 - 0.576687
bphA2e small subunit aromatic oxygenasepNL1 CDS128947 498 - 0.586345
bphA2f small subunit naph/bph dioxygenasepNL1 CDS13402 525 - 0.533333
bphA3 ferredoxin subunit aromatic oxygenasepNL1 CDS161463 327 + 0.58104
bphA4 ferredoxin reductase subunit aromatic oxygenasepNL1 CDS132605 1227 - 0.645477
bphB dihydrodiol dehydrogenasepNL1 CDS144626 801 - 0.630462
bphC dihydroxy naphthalene/biphenyl dioxygenasepNL1 CDS160518 900 + 0.628889
bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoatehydrola sepNL1 CDS180675 861 - 0.606272
bphE 2-oxopent-4-enoate hydratasepNL1 CDS181675 816 + 0.64951
bphF 4-hydroxy-2-oxovalerate aldolasepNL1 CDS182500 789 + 0.638783
bphK glutathione S-transferasepNL1 CDS154979 606 - 0.632013
bphR regulator aromatic degradative pathwayspNL1 CDS133945 1641 - 0.620963
isA transposase, fusion orf777 and orf780pNL1 CDS102735 947 + 0.646251
isAa transposase C-terminuspNL1 CDS103208 474 + 0.64135
isAb transposase N-terminuspNL1 CDS102735 387 + 0.658915
matRa groupII intron-associated maturasepNL1 CDS43724 1902 + 0.58938
nahD 2-hydroxychromene-2-carboxylate isomerasepNL1 CDS163561 594 + 0.604377
nahE 1, 2-dihydroxybenzylpyruvate aldolasepNL1 CDS130659 987 - 0.633232
nahF salicylaldehyde dehydrogenasepNL1 CDS173522 1440 + 0.646528
orf003 unknownpNL1 CDS10 1185 - 0.586498
orf007 regulatorpNL1 CDS1343 852 - 0.575117
orf015 unknownpNL1 CDS2388 930 + 0.555914
orf024 unknownpNL1 CDS3380 1320 + 0.622727
orf029 unknownpNL1 CDS4704 933 + 0.670954
orf041 unknownpNL1 CDS5637 411 - 0.632603
orf045 unknownpNL1 CDS6058 285 - 0.603509
orf047 3-isopropylmalate dehydrogenasepNL1 CDS6387 1068 - 0.626405
orf058 unknownpNL1 CDS7468 1014 - 0.616371
orf064 unknownpNL1 CDS8507 963 - 0.576324
orf1038 unknown, possibly crypticpNL1 CDS139680 408 + 0.556373
orf1042 unknown, possibly crypticpNL1 CDS140133 2118 + 0.559018
orf1126 unknownpNL1 CDS152582 432 - 0.673611
orf114 unknownpNL1 CDS15469 930 + 0.603226
orf1158 unknownpNL1 CDS157402 993 - 0.651561
orf1201 unknownpNL1 CDS164183 2181 + 0.600642
orf121 putative aromatic efflux pump inner membrane proteinpNL1 CDS16461 1530 - 0.589543
orf1217 unknownpNL1 CDS166474 2499 + 0.597039
orf1233 semialdehyde dehydrogenasepNL1 CDS169105 1473 + 0.643585
orf1244 decarboxylasepNL1 CDS170735 615 + 0.643902
orf1251 unknownpNL1 CDS171352 573 + 0.636998
orf1272 unknownpNL1 CDS174975 1461 + 0.627652
orf1280 unknownpNL1 CDS176432 225 + 0.644444
orf1300 unknownpNL1 CDS178726 231 - 0.554113
orf1302 unknownpNL1 CDS178929 153 - 0.535948
orf1303 unknownpNL1 CDS179092 318 - 0.566038
orf1307 unknownpNL1 CDS179406 603 - 0.598673
orf1313 unknownpNL1 CDS180052 606 - 0.60231
orf132 putative aromatic efflux pump membrane proteinpNL1 CDS17997 1146 - 0.652705
orf1338 unknownpNL1 CDS183291 1167 + 0.652099
orf140 putative aromatic efflux pump outer membrane proteinpNL1 CDS19139 1452 - 0.683884
orf151 unknownpNL1 CDS20580 414 - 0.652174
orf154 unknownpNL1 CDS20990 744 - 0.669355
orf158 Marr family regulatorpNL1 CDS21948 447 + 0.608501
orf165 unknownpNL1 CDS22683 216 + 0.625
orf169 unknownpNL1 CDS22945 192 + 0.588542
orf171 unknownpNL1 CDS23174 732 - 0.606557
orf178 unknown; putative inner membrane proteinpNL1 CDS23985 285 + 0.585965
orf181 putative DNA invertasepNL1 CDS24293 882 - 0.611111
orf191 unknownpNL1 CDS25516 852 + 0.701878
orf198 unknownpNL1 CDS26374 312 - 0.650641
orf203 putative replication protein BpNL1 CDS26780 984 - 0.585366
orf229 unknownpNL1 CDS31132 843 + 0.642942
orf235 Probably methylase/helicasepNL1 CDS31995 4278 + 0.656381
orf261 unknownpNL1 CDS36259 1140 - 0.639474
orf271 unknownpNL1 CDS37635 591 - 0.610829
orf277 putative excisionasepNL1 CDS38238 459 - 0.590414
orf282 putative plasmid stabilization proteinpNL1 CDS38857 2118 + 0.651558
orf299 unknownpNL1 CDS41047 1668 + 0.649281
orf310 exonI protein similar to replication primase N-terminuspNL1 CDS42711 384 + 0.619792
orf332 exonII protein similar to replication primase N-terminuspNL1 CDS45628 393 + 0.631043
orf338 putative phage type integrase/recombinasepNL1 CDS46175 1392 + 0.645833
orf347 unknownpNL1 CDS47563 1788 + 0.64877
orf363 unknownpNL1 CDS49347 2226 + 0.647799
orf382 similar to N-terminus replication primasespNL1 CDS51617 903 + 0.634551
orf385 exonIII protein similar to replication primase N-terminus and to Rhizobium Y4eCpNL1 CDS52516 273 + 0.600733
orf389 unknownpNL1 CDS52876 657 + 0.675799
orf392 unknownpNL1 CDS53544 288 + 0.625
orf396 unknownpNL1 CDS54045 162 + 0.592593
orf404 GroupII intron-associated maturasepNL1 CDS54543 1716 + 0.581002
orf416 unknownpNL1 CDS56255 444 + 0.65991
orf422 unknownpNL1 CDS56695 252 + 0.65873
orf424 unknownpNL1 CDS56951 489 - 0.668712
orf429 unknownpNL1 CDS57528 729 - 0.61454
orf433 unknownpNL1 CDS58338 1956 + 0.583333
orf447 unknownpNL1 CDS60290 1602 + 0.568664
orf460 unknownpNL1 CDS62242 1008 + 0.59127
orf468 unknownpNL1 CDS63249 1614 + 0.563197
orf480 unknownpNL1 CDS64859 1524 + 0.591864
orf490 unknownpNL1 CDS66431 2388 - 0.549414
orf505 unknownpNL1 CDS68841 165 - 0.49697
orf510 unknownpNL1 CDS69427 549 + 0.681239
orf514 unknownpNL1 CDS70134 357 + 0.64986
orf520 unknownpNL1 CDS70728 663 + 0.684766
orf527 unknownpNL1 CDS71453 441 + 0.673469
orf531 unknownpNL1 CDS71905 324 + 0.682099
orf537 unknownpNL1 CDS72649 738 + 0.689702
orf544 unknownpNL1 CDS73393 1353 - 0.675536
orf556 unknownpNL1 CDS74779 585 - 0.673504
orf563 unknownpNL1 CDS75408 690 + 0.652174
orf569 RNA polymerase signa E (sigma 24)pNL1 CDS76094 546 - 0.690476
orf583 unknownpNL1 CDS77508 345 + 0.701449
orf590 unknownpNL1 CDS77912 192 + 0.697917
orf597 regulatorpNL1 CDS78937 480 + 0.641667
orf630 unknownpNL1 CDS83673 246 + 0.654472
orf633 unknownpNL1 CDS83915 390 + 0.674359
orf638 unknownpNL1 CDS84320 873 + 0.605956
orf647 unknownpNL1 CDS85205 276 - 0.630435
orf649 unknownpNL1 CDS85500 1488 - 0.625
orf659 unknownpNL1 CDS87091 744 - 0.65457
orf666 unknownpNL1 CDS87971 1044 + 0.655172
orf679 unknownpNL1 CDS89068 384 + 0.632812
orf680 unknownpNL1 CDS89448 312 + 0.61859
orf681 unknownpNL1 CDS89819 447 + 0.626398
orf690 unknownpNL1 CDS90570 291 + 0.639175
orf704 DNA helicasepNL1 CDS93181 3042 + 0.665023
orf721 unknownpNL1 CDS96464 204 + 0.651961
orf724 unknownpNL1 CDS96687 357 + 0.677871
orf729 unknownpNL1 CDS97152 2442 + 0.608518
orf753 unknownpNL1 CDS99699 216 + 0.652778
orf756 unknownpNL1 CDS100124 222 + 0.581081
orf758 regulatorpNL1 CDS100348 801 - 0.655431
orf766 unknownpNL1 CDS101252 717 + 0.62622
orf771 unknownpNL1 CDS102073 222 + 0.54955
orf816 unknownpNL1 CDS108667 411 - 0.690998
orf843 unknownpNL1 CDS112966 267 - 0.689139
orf851 Conjugal transfer proteinpNL1 CDS113921 1107 - 0.69467
orf857 unknownpNL1 CDS115017 363 - 0.663912
orf876 unknownpNL1 CDS118097 1044 - 0.704023
orf883 protein disulfide-isomerasepNL1 CDS119137 897 - 0.686734
orf912 unknownpNL1 CDS123201 315 - 0.688889
orf915 unknownpNL1 CDS124303 522 + 0.599617
orf916 unknownpNL1 CDS123680 534 + 0.565543
orf921 unknownpNL1 CDS124835 276 + 0.619565
orf925 transglycosylasepNL1 CDS125077 798 - 0.576441
orf933 unknownpNL1 CDS126055 669 - 0.591928
orf938 unknownpNL1 CDS126716 699 - 0.622318
orf942 unknownpNL1 CDS127407 393 - 0.56743
orf946 unknownpNL1 CDS127877 1011 - 0.5727
pchC cytochrome subunit p-cresol methylhydroxylasepNL1 CDS178168 366 + 0.576503
pchFa flavoprotein subunit p-cresol methylhydroxylasepNL1 CDS171921 1560 + 0.599359
pchFb flavoprotein subunit p-cresol methylhydroxylasepNL1 CDS176670 1467 + 0.644172
ppdK pyruvate phosphate dikinasepNL1 CDS9523 2667 - 0.626172
repAa RepA replication proteinpNL1 CDS27995 1263 - 0.572447
repAb RepA replication proteinpNL1 CDS29754 1305 + 0.580077
ssbR single strand binding proteinpNL1 CDS78315 336 + 0.636905
tnpA transposon protein ApNL1 CDS82225 1215 - 0.619753
tnpB transponson protein BpNL1 CDS80102 2133 - 0.628692
tnpC transposon protein CpNL1 CDS79449 657 - 0.592085
traB sex pilus assembly and synthesis proteinpNL1 CDS120044 1377 - 0.668845
traC sex pilus assembly and synthesis proteinpNL1 CDS115376 2571 - 0.655776
traD Conjugal DNA metabolismpNL1 CDS90847 2331 + 0.628486
traE sex pilus assembly and synthesis proteinpNL1 CDS122214 624 - 0.634615
traF pilus assembly and synthesis proteinpNL1 CDS107858 813 - 0.662977
traG sex pilus assembly and mating pair stabilization proteinpNL1 CDS103653 2739 - 0.629792
traH pilus assembly and synthesis proteinpNL1 CDS106404 1455 - 0.644674
traK sex pilus assembly and synthesis proteinpNL1 CDS121420 795 - 0.657862
traL sex pilus assembly and synthesis proteinpNL1 CDS122851 285 - 0.578947
traN mating pair stabilization proteinpNL1 CDS109058 2115 - 0.646336
traU sex pilus assembly and synthesis proteinpNL1 CDS111947 1023 - 0.647116
traW sex pilus assembly and synthesis proteinpNL1 CDS113229 696 - 0.66092
trbC sex pilus assembly and mating pair formation proteinpNL1 CDS111174 765 - 0.682353
xylA xylene monooxygenase electron transfer subunitpNL1 CDS143526 1041 + 0.601345
xylB benzyl alcohol dehydrogenasepNL1 CDS12262 1098 - 0.611111
xylC benzaldehyde dehydrogenasepNL1 CDS145458 1506 - 0.61089
xylE catechol 2, 3 dioxygenasepNL1 CDS153016 924 - 0.588745
xylF 2-hydroxymuconic semialdehyde hydrolasepNL1 CDS153958 852 - 0.623239
xylG 2-hydroxymuconic semialdehyde dehydrogenasepNL1 CDS151058 1518 - 0.639657
xylH 4-oxalocrotonoate tautomerasepNL1 CDS147254 243 - 0.641975
xylI 4-oxalocrotonate decarboxylasepNL1 CDS147498 771 - 0.638132
xylJ 2-hydroxypent-2, 4-dienoate hydratasepNL1 CDS150259 795 - 0.649057
xylK 4-hydroxy-2-oxovalerate aldolasepNL1 CDS148270 1032 - 0.623062
xylL dihydroxy cyclohexadiene carboxylate dehydrogenasepNL1 CDS131797 789 + 0.633714
xylM xylene monooxygenase hydroxylase subunitpNL1 CDS142340 1104 + 0.622283
xylQ acetaldehyde dehydrogeanse (acylating)pNL1 CDS149298 939 - 0.628328
xylT ferredoxin-like proteinpNL1 CDS146983 282 - 0.599291
xylX large subunit toluate/benzoate dioxygenasepNL1 CDS158872 1416 - 0.610169
xylY small subunit toluate/benzoate dioxygenasepNL1 CDS158378 495 - 0.610101