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2024-04-29 04:04:01

Gene list

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Organism: Escherichia coli O157:H7, EDL933

Number of genes found: 187

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Escherichia coli O157:H7, EDL933
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA pO157 repeat_region77032 733 + 0.472033
NA pO157 misc_feature69237 447 + 0.615213
NA pO157 promoter77734 30 + 0.533333
NA pO157 promoter8073 30 + 0.533333
NA pO157 repeat_region54552 27 + 0.62963
NA pO157 promoter1390 30 + 0.433333
NA pO157 promoter17906 29 + 0.275862
NA pO157 repeat_region49703 21 - 0.285714
NA pO157 promoter54529 28 + 0.392857
NA pO157 promoter10089 28 + 0.535714
NA pO157 rep_origin4084 149 + 0.355705
NA pO157 misc_feature3847 249 + 0.522088
NA pO157 repeat_region48333 21 + 0.333333
NA pO157 RBS2473 6 + 0.666667
NA pO157 repeat_region37521 1252 + 0.507188
NA pO157 misc_feature38737 36 + 0.472222
NA pO157 promoter4764 30 + 0.233333
NA pO157 repeat_region5986 682 - 0.51173
NA pO157 misc_feature4521 150 - 0.6
NA pO157 repeat_region53269 1310 + 0.539695
NA pO157 repeat_region77768 490 + 0.497959
NA pO157 promoter87558 30 + 0.266667
NA pO157 promoter4169 29 + 0.310345
NA pO157 promoter46416 30 + 0.233333
NA pO157 repeat_region49680 21 - 0.380952
NA pO157 repeat_region48500 21 + 0.285714
NA pO157 promoter78518 29 + 0.275862
NA pO157 promoter84137 30 + 0.266667
NA pO157 repeat_region49745 21 - 0.285714
NA pO157 repeat_region48315 21 + 0.380952
NA pO157 repeat_region48460 21 + 0.380952
NA pO157 repeat_region57622 130 + 0.538462
NA pO157 promoter22915 30 + 0.233333
NA pO157 promoter47064 29 + 0.172414
NA pO157 misc_feature4072 9 + 0.333333
NA pO157 promoter7134 28 - 0.464286
NA pO157 repeat_region88476 424 + 0.518868
NA pO157 repeat_region5661 1555 + 0.524759
NA pO157 repeat_region47890 21 + 0.380952
NA pO157 promoter51825 29 + 0.310345
NA pO157 promoter34145 30 + 0.6
NA pO157 promoter26426 29 + 0.310345
NA pO157 promoter91037 30 + 0.5
NA pO157 repeat_region48285 21 + 0.428571
NA pO157 promoter74309 30 + 0.533333
NA pO157 promoter16606 29 + 0.482759
NA pO157 promoter39216 29 + 0.275862
NA pO157 promoter653 29 + 0.344828
NA pO157 repeat_region15426 501 + 0.49501
NA pO157 repeat_region54827 248 + 0.415323
NA pO157 promoter7323 28 + 0.285714
NA pO157 promoter37539 28 + 0.5
NA pO157 promoter60631 28 + 0.392857
NA pO157 promoter73746 30 + 0.5
NA pO157 promoter17290 30 + 0.266667
NA pO157 -10_signal2439 7 + 0.428571
NA pO157 promoter88850 28 + 0.392857
NA pO157 promoter1899 29 + 0.206897
NA pO157 RBS72943 9 + 0.555556
NA pO157 promoter42736 29 + 0.275862
NA pO157 repeat_region9831 1273 + 0.504321
NA pO157 repeat_region53269 27 + 0.592593
NA pO157 promoter6753 28 - 0.571429
NA pO157 -35_signal2416 6 + 0.666667
NA pO157 repeat_region49724 21 - 0.285714
NA pO157 misc_feature37521 36 + 0.5
NA pO157 repeat_region48530 21 - 0.333333
NA pO157 repeat_region49766 21 - 0.428571
NA pO157 promoter6167 30 - 0.466667
NA pO157 promoter1025 28 + 0.25
NA pO157 promoter44726 28 + 0.25
NA pO157 repeat_region73032 60 + 0.55
NA pO157 misc_feature2240 88 - 0.545455
NA pO157 promoter11225 28 + 0.178571
NA pO157 RBS3032 4 + 0.5
NA pO157 repeat_region88137 212 + 0.54717
NA pO157 promoter69611 30 - 0.5
NA pO157 promoter2754 29 + 0.344828
EHEC-hlyA hemolysin toxin proteinSubName: Full=Hemolysin A; SubName: Full=Hemolysin toxin protein; pO157 CDS39822 2997 + 0.39306
EHEC-hlyB hemolysin transport proteinRecName: Full=Alpha-hemolysin translocation ATP-binding protein HlyB; AltName: Full=EHEC-HlyB protein; pO157 CDS42868 2121 + 0.37388
EHEC-hlyC hemolysin transport proteinSubName: Full=Hemolysin transport protein; pO157 CDS39305 516 + 0.348837
EHEC-hlyD hemolysin transport proteinSubName: Full=Hemolysin D; SubName: Full=Hemolysin transport protein; pO157 CDS44992 1440 + 0.365972
L7002 unknownSubName: Full=Uncharacterized protein; pO157 CDS698 252 + 0.587302
L7003 hypothetical protein 15.6 kDa protein in finO 3' region precursorRecName: Full=Uncharacterized endonuclease; EC=3.1.-.-; Flags: Precursor; pO157 CDS1151 462 + 0.491342
L7004 putative hemolysin expression modulating proteinSubName: Full=Putative hemolysin expression modulating protein; pO157 CDS1658 210 + 0.357143
L7005 hypothetical proteinSubName: Full=Plasmid pO157 DNA, complete sequence; SubName: Full=Uncharacterized protein; pO157 CDS1905 339 + 0.486726
L7007 replication initiation proteinSubName: Full=Replication initiation protein; pO157 CDS2973 75 + 0.48
L7009 replication proteinSubName: Full=Replication protein; pO157 CDS4259 195 + 0.54359
L7010 unknownSubName: Full=Plasmid pO157 DNA, complete sequence; SubName: Full=Uncharacterized protein; pO157 CDS4810 285 + 0.547368
L7011 pO157 misc_feature5139 5 +
L7011 hypothetical proteinSubName: Full=Plasmid pO157 DNA, complete sequence; SubName: Full=Uncharacterized protein; pO157 CDS5094 276 + 0.485507
L7012 unknownSubName: Full=Uncharacterized protein; pO157 CDS5440 288 - 0.340278
L7013 transposase (partial)SubName: Full=Transposase (Partial); pO157 CDS5755 222 - 0.536036
L7014 hypothetical proteinSubName: Full=Uncharacterized protein; pO157 CDS6029 735 - 0.519728
L7015 transposaseSubName: Full=Transposase; pO157 CDS6547 510 - 0.558824
L7016 unknownSubName: Full=Uncharacterized protein; pO157 CDS7041 240 + 0.529167
L7018 hypothetical proteinSubName: Full=Uncharacterized protein; pO157 CDS9627 390 + 0.379487
L7019 transposaseSubName: Full=Transposase; pO157 CDS10174 888 + 0.536036
L7021 unknownSubName: Full=Uncharacterized protein; pO157 CDS15307 108 - 0.435185
L7023 hypothetical proteinSubName: Full=Uncharacterized protein; pO157 CDS16148 150 - 0.486667
L7024 regulatory proteinSubName: Full=Regulatory protein; pO157 CDS16587 135 + 0.474074
L7025 unknownSubName: Full=Uncharacterized protein; pO157 CDS16882 174 + 0.442529
L7026 hypothetical proteinSubName: Full=Uncharacterized protein; pO157 CDS17323 822 + 0.456204
L7027 hypothetical proteinSubName: Full=Uncharacterized protein; pO157 CDS18147 1104 + 0.508152
L7028 hypothetical proteinSubName: Full=Hypothetical 66.6 kD protein in FRWD-PPC intergenic region; SubName: Full=Uncharacterized protein; pO157 CDS19340 1722 + 0.479094
L7029 putative acyltransferaseSubName: Full=Putative acyltransferase; pO157 CDS21102 1032 + 0.475775
L7030 unknownSubName: Full=Uncharacterized protein; pO157 CDS22421 174 + 0.45977
L7031 hypothetical proteinRecName: Full=Metalloprotease StcE; EC=3.4.24.-; AltName: Full=Mucinase; AltName: Full=Neutral zinc metalloprotease StcE; AltName: Full=Secreted protease of C1 esterase inhibitor from EHEC; Flags: Precursor; pO157 CDS23016 2697 + 0.447905
L7045 hypothetical proteinSubName: Full=IS911 protein; SubName: Full=Uncharacterized protein; pO157 CDS37557 342 + 0.450292
L7046 ORFB of IS911SubName: Full=ORFB of IS911; pO157 CDS37943 822 + 0.530414
L7051 hypothetical proteinSubName: Full=Uncharacterized protein; pO157 CDS46498 195 + 0.271795
L7052 hypothetical proteinSubName: Full=PapX protein; SubName: Full=Uncharacterized protein; pO157 CDS46722 285 + 0.333333
L7053 hypothetical serine-threonine protein kinaseSubName: Full=Hypothetical serine-threonine protein kinase; pO157 CDS47175 231 + 0.437229
L7054 replication proteinSubName: Full=Replication protein; pO157 CDS47910 357 + 0.585434
L7055 replication proteinSubName: Full=Plasmid pO157 DNA, complete sequence; SubName: Full=Replication protein; pO157 CDS47955 318 - 0.584906
L7056 replication proteinSubName: Full=RepFIB; SubName: Full=Replication protein; pO157 CDS48551 954 - 0.525157
L7057 replication proteinSubName: Full=Plasmid pO157 DNA, complete sequence; SubName: Full=Replication protein; pO157 CDS49266 330 + 0.49697
L7058 hypothetical proteinSubName: Full=Uncharacterized protein; pO157 CDS49936 237 - 0.510549
L7059 hypothetical proteinSubName: Full=Plasmid pO157 DNA, complete sequence; SubName: Full=Uncharacterized protein; pO157 CDS50133 621 - 0.521739
L7060 hypothetical proteinSubName: Full=KfrAs; SubName: Full=Uncharacterized protein; pO157 CDS50750 684 - 0.69152
L7061 hypothetical proteinSubName: Full=Uncharacterized protein; pO157 CDS51489 195 + 0.502564
L7066 hypothetical proteinSubName: Full=Escherichia coli O157:H7 insertion sequence IS1203v DNA, complete sequence, stx2cA, stx2cb genes for shiga toxin 2 variant A subunit, shiga toxin 2 subunit B; SubName: Full=IS629 protein; SubName: Full=Putative transposase; SubName: Full=Putative transposase OrfA protein of insertion sequence IS629; SubName: Full=Putative transposase encoded within prophage CP-933O; SubName: Full=Uncharacterized protein; pO157 CDS54198 327 - 0.541284
L7067 Rep protein E1 pO157 CDS54669 156 + 0.49359
L7070 hypothetical proteinRecName: Full=Uncharacterized protein YuaZ; pO157 CDS57934 273 + 0.615385
L7071 unknownSubName: Full=Uncharacterized protein; pO157 CDS58290 297 - 0.498316
L7072 unknownSubName: Full=Reverse transcriptase; SubName: Full=Uncharacterized protein; pO157 CDS58849 1725 + 0.470725
L7073 unknownSubName: Full=Plasmid pO157 DNA, complete sequence; SubName: Full=Uncharacterized protein; pO157 CDS60650 903 + 0.547065
L7074 hypothetical proteinSubName: Full=Hemagglutinin-associated protein; SubName: Full=Uncharacterized protein; pO157 CDS61938 684 + 0.571637
L7075 unknownRecName: Full=Uncharacterized protein YubF; pO157 CDS62737 555 + 0.565766
L7076 unknownRecName: Full=Uncharacterized protein YubG; pO157 CDS63337 777 + 0.611326
L7077 unknownSubName: Full=Uncharacterized protein; pO157 CDS64531 426 + 0.542253
L7078 unknownRecName: Full=Uncharacterized protein YubJ; pO157 CDS65003 423 + 0.555556
L7079 unknownSubName: Full=Uncharacterized protein; pO157 CDS65583 531 - 0.619586
L7080 unknownSubName: Full=Uncharacterized protein; pO157 CDS66627 261 - 0.609195
L7081 unknownSubName: Full=Plasmid pO157 DNA, complete sequence; SubName: Full=Uncharacterized protein; pO157 CDS66891 1362 + 0.571219
L7082 unknownSubName: Full=Plasmid pO157 DNA, complete sequence; SubName: Full=Uncharacterized protein; pO157 CDS68299 564 + 0.586879
L7083 unknownSubName: Full=Plasmid pO157 DNA, complete sequence; SubName: Full=Uncharacterized protein; pO157 CDS68948 456 - 0.600877
L7085 hypothetical proteinRecName: Full=UPF0401 protein YubL; pO157 CDS70187 261 + 0.517241
L7086 hypothetical proteinRecName: Full=Uncharacterized protein YubM; pO157 CDS70453 2019 + 0.583952
L7091 putative nickaseSubName: Full=NikB; SubName: Full=Putative nickase; pO157 CDS74290 1974 + 0.519757
L7092 hypothetical proteinSubName: Full=Plasmid pO157 DNA, complete sequence; SubName: Full=Uncharacterized protein; pO157 CDS76331 432 + 0.444444
L7093 putative transposaseSubName: Full=Putative transposase; SubName: Full=Transposase Tra5; pO157 CDS77322 360 - 0.511111
L7094 transposaseSubName: Full=Transposase; pO157 CDS77863 411 + 0.50365
L7095 putative cytotoxinSubName: Full=Putative cytotoxin; pO157 CDS78542 9510 + 0.313775
L7096 putative transposaseSubName: Full=Putative transposase; SubName: Full=Transposase Tra5; pO157 CDS88143 273 + 0.534799
L7097 hypothetical proteinSubName: Full=IS629 protein; SubName: Full=Uncharacterized protein; pO157 CDS88342 504 - 0.517857
ccdA plasmid maintenance proteinRecName: Full=Antitoxin CcdA; AltName: Full=LynA; AltName: Full=Protein H; AltName: Full=Protein LetA; pO157 CDS51892 219 + 0.506849
ccdB plasmid maintenance proteinRecName: Full=Toxin CcdB; AltName: Full=Cytotoxic protein CcdB; AltName: Full=LynB; AltName: Full=Protein G; AltName: Full=Protein LetD; pO157 CDS52112 306 + 0.503268
cpb2 CopB protein (RepA2 protein)RecName: Full=Replication regulatory protein repA2; AltName: Full=Protein CopB; pO157 CDS2483 255 + 0.439216
espP putative exoprotein-precursorRecName: Full=Serine protease EspP; EC=3.4.21.-; Contains: RecName: Full=Secreted autotransporter protein EspP; AltName: Full=Extracellular serine protease plasmid-encoded EspP; Contains: RecName: Full=Autotransporter protein EspP translocator; Flags: Precursor; pO157 CDS11242 3903 + 0.442993
etpC type II secretion proteinSubName: Full=Type II secretion pathway related protein; SubName: Full=Type II secretion protein; pO157 CDS25799 876 + 0.423516
etpD type II secretion proteinSubName: Full=Type II secretion protein; pO157 CDS26714 1929 + 0.503888
etpE type II secretion proteinSubName: Full=Type II secretion pathway related protein; SubName: Full=Type II secretion protein; pO157 CDS28642 1506 + 0.536521
etpF type II secretion proteinSubName: Full=Type II secretion pathway related protein; SubName: Full=Type II secretion protein; pO157 CDS30149 1224 + 0.565359
etpG type II secretion proteinSubName: Full=Type II secretion pathway related protein; SubName: Full=Type II secretion protein; pO157 CDS31403 435 + 0.514943
etpH type II secretion proteinSubName: Full=Type II secretion pathway related protein; SubName: Full=Type II secretion protein; pO157 CDS31834 555 + 0.533333
etpI type II secretion proteinSubName: Full=Type II secretion protein; pO157 CDS32385 366 + 0.579235
etpJ type II secretion proteinSubName: Full=Type II secretion pathway related protein; SubName: Full=Type II secretion protein; pO157 CDS32747 600 + 0.548333
etpK type II secretion proteinRecName: Full=Type II secretion system protein K; pO157 CDS33343 978 + 0.53681
etpL type II secretion proteinRecName: Full=Type II secretion system protein L; Short=T2SS protein L; pO157 CDS34254 1278 + 0.56651
etpM type II secretion proteinRecName: Full=Putative type II secretion system M-type protein; Short=Putative T2SS M-type protein; AltName: Full=Putative extracytoplasmic function protein; AltName: Full=Putative general secretion pathway M-type protein; pO157 CDS35518 513 + 0.530214
etpN type II secretion proteinRecName: Full=Type 4 prepilin-like proteins leader peptide-processing enzyme; EC=2.1.1.-; EC=3.4.23.43; pO157 CDS36088 834 + 0.527578
etpO type II secretion proteinSubName: Full=Type II secretion pathway related protein; SubName: Full=Type II secretion protein; pO157 CDS37013 402 + 0.447761
finO fertility inhibition protein (conjugal transfer repressor)RecName: Full=Fertility inhibition protein; AltName: Full=Conjugal transfer repressor; pO157 CDS1 561 + 0.566845
flmA stable plasmid inheritance proteinRecName: Full=Stable plasmid inheritance protein; AltName: Full=F leading maintenance protein; pO157 CDS73950 159 + 0.471698
flmB pO157 misc_RNA73798 104 + 0.490385
flmC hypothetical proteinSubName: Full=Uncharacterized protein; pO157 CDS73892 213 + 0.483568
insA transposaseSubName: Full=Transposase; pO157 CDS15609 273 - 0.494505
katP EHEC-catalase/peroxidaseRecName: Full=Catalase-peroxidase 2; Short=CP 2; EC=1.11.1.21; AltName: Full=Peroxidase/catalase 2; Flags: Precursor; pO157 CDS7373 2211 + 0.456807
psb1 putative regulator of SOS inductionSubName: Full=Putative regulator of SOS induction; pO157 CDS72523 438 + 0.570776
psiA hypothetical proteinSubName: Full=PsiA protein; SubName: Full=Uncharacterized protein; pO157 CDS72957 762 + 0.589239
redF resolvase (protein d)SubName: Full=Resolvase; SubName: Full=Resolvase (Protein d); pO157 CDS52418 807 + 0.568773
rep2 replication initiation proteinSubName: Full=Replication initiation protein; SubName: Full=Replication protein; pO157 CDS3040 858 + 0.575758
sopA pO157 RBS55400 4 + 0.5
sopA plasmid partitioning proteinRecName: Full=Protein SopA; AltName: Full=Plasmid partition protein A; pO157 CDS55412 1167 + 0.471294
sopA pO157 -35_signal55347 6 + 0.333333
sopA pO157 -10_signal55370 6 +
sopB pO157 terminator57603 25 + 0.56
sopB pO157 -35_signal56508 6 + 0.166667
sopB pO157 -10_signal56533 6 + 0.166667
sopB pO157 RBS56565 7 + 0.571429
sopB plasmid partitioning proteinRecName: Full=Protein SopB; AltName: Full=Plasmid partition protein B; pO157 CDS56578 972 + 0.459877
ssb single strand binding proteinRecName: Full=Single-stranded DNA-binding protein; pO157 CDS69666 492 + 0.575203
tra6 transposaseSubName: Full=Escherichia coli O157:H7 insertion sequence IS1203v DNA, complete sequence, stx2cA, stx2cb genes for shiga toxin 2 variant A subunit, shiga toxin 2 subunit B; SubName: Full=Putative transposase OrfB protein of insertion sequence IS629; SubName: Full=Transposase; pO157 CDS53311 891 - 0.539843
traI DNA helicaseSubName: Full=DNA helicase; pO157 CDS88992 1299 + 0.618938
traX acetylase for F pilinSubName: Full=Acetylase for F pilin; SubName: Full=TraX protein; pO157 CDS90310 747 + 0.580991
ypt2 hypothetical protein 31.7 kDa protein in traX-finO intergenic regionSubName: Full=Plasmid pO157 DNA, complete sequence; SubName: Full=Uncharacterized protein; pO157 CDS91115 861 + 0.444832