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2024-05-05 18:14:40

Gene list

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Organism: Yersinia pestis KIM, KIM5

Number of genes found: 91

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Hide UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Yersinia pestis KIM, KIM5
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA pCD1 repeat_region63528 3054 + 0.501965
NA pCD1 repeat_region50753 1235 + 0.509312
NA pCD1 rep_origin1741 1195 + 0.50795
NA pCD1 repeat_region54971 270 + 0.511111
NA pCD1 repeat_region11939 3863 + 0.474502
NA copA pCD1 misc_RNA1560 90 - 0.466667
NA pCD1 promoter52628 102 + 0.264706
NA pCD1 repeat_region58749 1670 + 0.550898
NA pCD1 repeat_region61231 6302 + 0.448905
NA pCD1 repeat_region70056 391 + 0.473146
NA pCD1 repeat_region12609 1954 + 0.51433
NA pCD1 repeat_region61336 1214 + 0.499176
'yadA pCD1 pseudo67900 936 + 0.424145
Y0001 unknownSubName: Full=Uncharacterized protein; pCD1 CDS57 312 + 0.557692
Y0006 unknownSubName: Full=Uncharacterized protein; pCD1 CDS3427 219 - 0.488584
Y0008 unknownSubName: Full=Uncharacterized protein; pCD1 CDS4758 429 + 0.447552
Y0012 unknownSubName: Full=O68; SubName: Full=Uncharacterized protein; SubName: Full=YPCD1.68c protein; pCD1 CDS9858 207 + 0.608696
Y0014 putative transposaseSubName: Full=Putative transposase; pCD1 CDS12265 372 - 0.454301
Y0016 putative transposaseSubName: Full=ATP-binding protein; SubName: Full=IS transposase; SubName: Full=Insertion sequence IS100, ATP-binding protein; SubName: Full=Putative ATP-binding protein; SubName: Full=Putative IS100 transposase; SubName: Full=Putative transposase; SubName: Full=Putative transposase ATP-binding protein; SubName: Full=Putative transposase C end of IS100 transframe protein; SubName: Full=Putative transposase-orf2 protein; SubName: Full=Uncharacterized protein; pCD1 CDS13714 783 + 0.50447
Y0044 unknownRecName: Full=Chaperone protein SycN; pCD1 CDS33973 372 + 0.526882
Y0045 unknownRecName: Full=Yop proteins translocation protein X; pCD1 CDS34341 369 + 0.495935
Y0046 unknownRecName: Full=Chaperone protein YscY; AltName: Full=Yop proteins translocation protein Y; pCD1 CDS34706 345 + 0.46087
Y0055 putative transposaseSubName: Full=Possible transposase remnant; SubName: Full=Putative transposase; pCD1 CDS42220 132 - 0.462121
Y0056 unknownSubName: Full=Transposase; SubName: Full=Uncharacterized protein; pCD1 CDS42386 324 - 0.388889
Y0058 unknownSubName: Full=Uncharacterized protein; pCD1 CDS42878 210 + 0.428571
Y0061 unknownSubName: Full=Transposase; SubName: Full=Uncharacterized protein; pCD1 CDS44952 120 - 0.475
Y0062 unknownSubName: Full=Uncharacterized protein; pCD1 CDS45946 420 - 0.388095
Y0063 unknownSubName: Full=Uncharacterized protein; pCD1 CDS46637 390 + 0.276923
Y0068 unknownSubName: Full=Uncharacterized protein; pCD1 CDS50819 324 + 0.481481
Y0070 unknownSubName: Full=Transposase; SubName: Full=Uncharacterized protein; pCD1 CDS51733 198 + 0.5
Y0074 unknownRecName: Full=Antitoxin ParD; pCD1 CDS56087 276 + 0.431159
Y0075 unknownSubName: Full=ParE toxin protein; SubName: Full=Putative plasmid stabilization element ParE; SubName: Full=Uncharacterized protein; pCD1 CDS56355 300 + 0.38
Y0076 unknownSubName: Full=Uncharacterized protein; pCD1 CDS56496 297 - 0.373737
Y0084 putative IS1617 transposaseSubName: Full=Putative IS1617 transposase; SubName: Full=Putative transposase; SubName: Full=Transposase; pCD1 CDS62202 267 - 0.479401
Y0085 unknownSubName: Full=Uncharacterized protein; pCD1 CDS62568 330 - 0.281818
Y0086 unknownSubName: Full=Uncharacterized protein; pCD1 CDS63036 465 - 0.301075
Y0087 putative resolvaseSubName: Full=Putative resolvase; SubName: Full=Resolvase; SubName: Full=Transposon gamma-delta resolvase (Transposon TN1000) homolog; pCD1 CDS63519 552 - 0.46558
Y0093 putative DNA helicaseSubName: Full=Putative DNA helicase; SubName: Full=Uncharacterized protein; pCD1 CDS69466 492 + 0.554878
Y0094 unknownSubName: Full=Uncharacterized protein; pCD1 CDS70123 324 + 0.487654
lcrD secretion proteinRecName: Full=Low calcium response locus protein D; pCD1 CDS35037 2115 + 0.463357
lcrE secretion control proteinRecName: Full=Outer membrane protein YopN; AltName: Full=LcrE; AltName: Full=Yop4b; pCD1 CDS32846 882 + 0.461451
lcrF LCR activatorRecName: Full=Thermoregulatory protein LcrF; pCD1 CDS23907 816 - 0.416667
lcrG V-antigenRecName: Full=Low calcium response locus protein G; pCD1 CDS37630 288 + 0.46875
lcrH YopBD chaperoneRecName: Full=Low calcium response locus protein H; pCD1 CDS38912 507 + 0.441815
lcrQ LCR negative regulatorRecName: Full=Yop proteins translocation protein M; AltName: Full=Low calcium response locus protein Q; pCD1 CDS15801 348 - 0.479885
lcrR unknownRecName: Full=Low calcium response locus protein R; pCD1 CDS37148 441 + 0.489796
lcrS putative IS element proteinRecName: Full=Low calcium response locus protein S; pCD1 CDS14987 267 - 0.434457
lcrT putative transposaseRecName: Full=Low calcium response locus protein T; pCD1 CDS14547 405 - 0.454321
lcrV Yop secretion and targeting control proteinRecName: Full=Virulence-associated V antigen; AltName: Full=Low calcium response locus protein V; pCD1 CDS37919 981 + 0.377166
nuc endonucleaseSubName: Full=Endonuclease; SubName: Full=Endonuclease-like protein; pCD1 CDS665 369 + 0.487805
repA replication proteinSubName: Full=Putative replication initiation protein; SubName: Full=Replication protein; SubName: Full=Replication protein RepA-like protein; pCD1 CDS1734 867 + 0.542099
repB replication proteinSubName: Full=Putative replication transcriptional regulator; SubName: Full=Replication protein; SubName: Full=Replication protein RepB homolog; SubName: Full=Replication protein RepB-like protein; pCD1 CDS1171 255 + 0.423529
sopA sopAB transcription repressorSubName: Full=Chromosome partitioning protein ParA; SubName: Full=Putative plasmid partitioning transcription repressor; SubName: Full=SopAB transcription repressor; pCD1 CDS52730 1167 + 0.441302
sopB plasmid partitioning control proteinSubName: Full=Plasmid partitioning control protein; SubName: Full=Putative plasmid partitioning control protein; pCD1 CDS53896 963 + 0.417445
sycE YopE chaperoneRecName: Full=YopE regulator; pCD1 CDS57647 393 + 0.409669
sycH YopH chaperoneSubName: Full=Putative yopH targeting protein; SubName: Full=Putative yopH targeting protein SycH; SubName: Full=YopH chaperone; SubName: Full=YopH chaperone SycH protein homolog; pCD1 CDS60796 426 + 0.41784
sycT YopT chaperoneRecName: Full=Chaperone protein SycT; pCD1 CDS47070 399 - 0.411028
tap repA translation proteinSubName: Full=Putative repA translation protein; SubName: Full=RepA translation protein; pCD1 CDS1667 75 + 0.44
tyeA Yop secretion and targeting control proteinRecName: Full=Protein TyeA; pCD1 CDS33708 279 + 0.433692
yadA' pCD1 pseudo67532 252 + 0.420635
ylpA pCD1 pseudo50089 630 + 0.487302
yopB Yop targeting proteinSubName: Full=Putative Yop targeting protein; SubName: Full=Putative Yop targeting protein YopB; SubName: Full=Type III secretion host injection protein; SubName: Full=Yop targeting protein; SubName: Full=YopB homolog; pCD1 CDS39396 1206 + 0.466833
yopD Yop targeting negative regulatorSubName: Full=Putative Yop negative regulation/targeting component; SubName: Full=Putative Yop negative regulation/targeting component YopD; SubName: Full=Type III secretion host injection and negative regulator protein; SubName: Full=Yop targeting negative regulator; SubName: Full=YopD homolog; pCD1 CDS40620 921 + 0.431053
yopE targeted effectorRecName: Full=Outer membrane virulence protein YopE; pCD1 CDS56794 660 - 0.510606
yopH targeted effector proteinSubName: Full=Targeted effector protein; SubName: Full=Type III secretion injected virulence protein; SubName: Full=Uncharacterized protein; SubName: Full=YopH; pCD1 CDS10347 1407 + 0.474058
yopJ targeted effector proteinSubName: Full=Targeted effector protein; SubName: Full=YopP homolog; pCD1 CDS7798 867 + 0.347174
yopK Yop targeting proteinSubName: Full=Putative virulence determinant protein; SubName: Full=Type III secretion negative modulator of injection; SubName: Full=Yop targeting protein; SubName: Full=YopK (YopQ) homolog; pCD1 CDS48936 549 + 0.335155
yopM Yop targeted effector proteinRecName: Full=Outer membrane protein YopM; pCD1 CDS43481 1230 + 0.389431
yopT Yop targeted effectorRecName: Full=Cysteine protease YopT; EC=3.4.22.-; pCD1 CDS47468 969 - 0.431373
ypkA secreted protein kinaseRecName: Full=Protein kinase YpkA; Short=Protein kinase A; EC=2.7.11.1; AltName: Full=Targeted effector protein kinase; Flags: Precursor; pCD1 CDS5204 2199 + 0.481128
yscA unknownRecName: Full=Yop proteins translocation protein A; pCD1 CDS23730 99 - 0.313131
yscB unknownRecName: Full=Chaperone protein YscB; AltName: Full=Yop proteins translocation protein B; pCD1 CDS23091 414 - 0.417874
yscC type III secretion proteinSubName: Full=KIM5; SubName: Full=Putative type III secretion protein; SubName: Full=Putative type III secretion protein YscC; SubName: Full=Type III secretion outermembrane pore forming protein; SubName: Full=Type III secretion protein; SubName: Full=Yop proteins translocation protein C homolog; pCD1 CDS21262 1824 - 0.454496
yscD type III secretion proteinSubName: Full=Putative type III secretion protein; SubName: Full=Putative type III secretion protein YscD; SubName: Full=Type III secretion protein; SubName: Full=Yop proteins translocation protein D homolog; pCD1 CDS20006 1260 - 0.46746
yscE type III secretion proteinSubName: Full=Putative type III secretion protein; SubName: Full=Putative type III secretion protein YscE; SubName: Full=Type III secretion protein; SubName: Full=Yop proteins translocation protein E homolog; pCD1 CDS19809 201 - 0.422886
yscF type III secretion proteinSubName: Full=Putative type III secretion protein; SubName: Full=Putative type III secretion protein YscF; SubName: Full=Type III secretion cytoplasmic protein; SubName: Full=Type III secretion protein; SubName: Full=Yop proteins translocation protein F homolog; pCD1 CDS19545 264 - 0.416667
yscG type III secretion proteinSubName: Full=Putative type III secretion protein; SubName: Full=Putative type III secretion protein YscG; SubName: Full=Type III secretion protein; SubName: Full=Type III secretion spans bacterial envelope protein; SubName: Full=Yop proteins translocation protein G homolog; pCD1 CDS19196 348 - 0.439655
yscH secreted proteinRecName: Full=Yop proteins translocation protein H; AltName: Full=Low calcium response locus protein P; pCD1 CDS18702 498 - 0.429719
yscI type III secretion proteinRecName: Full=Yop proteins translocation protein I; AltName: Full=Low calcium response locus protein O; pCD1 CDS18354 348 - 0.468391
yscJ type III secretion proteinRecName: Full=Yop proteins translocation lipoprotein J; AltName: Full=Lipoprotein YlpB; AltName: Full=Low calcium response locus protein KA; Flags: Precursor; pCD1 CDS17613 735 - 0.428571
yscK type III secretion proteinRecName: Full=Yop proteins translocation protein K; AltName: Full=Low calcium response locus protein KB; pCD1 CDS16984 630 - 0.485714
yscL type III secretion proteinRecName: Full=Yop proteins translocation protein L; AltName: Full=Low calcium response locus protein KC; pCD1 CDS16373 666 - 0.448949
yscN Yops secretion proteinSubName: Full=Putative Yops secretion ATP synthase; SubName: Full=Putative Yops secretion ATP synthase YscN; SubName: Full=Yops secretion ATPase YscN homolog; SubName: Full=Yops secretion protein; pCD1 CDS31329 1320 - 0.508333
yscO type III secretion proteinSubName: Full=Putative type III secretion protein; SubName: Full=Putative type III secretion protein YscO; SubName: Full=Type III secretion protein; SubName: Full=Type III secretion spans bacterial envelope protein; SubName: Full=Yop proteins translocation protein O; SubName: Full=YscO; pCD1 CDS30868 465 - 0.458065
yscP type III secretion proteinRecName: Full=Yop proteins translocation protein P; pCD1 CDS29501 1368 - 0.486842
yscQ type III secretion proteinRecName: Full=Yop proteins translocation protein Q; pCD1 CDS28581 924 - 0.481602
yscR type III secretion proteinRecName: Full=Yop proteins translocation protein R; pCD1 CDS27931 654 - 0.43578
yscS type III secretion proteinRecName: Full=Yop proteins translocation protein S; pCD1 CDS27663 267 - 0.453184
yscT type III secretion proteinRecName: Full=Yop proteins translocation protein T; pCD1 CDS26881 786 - 0.428753
yscU type III secretion proteinRecName: Full=Yop proteins translocation protein U; pCD1 CDS25817 1065 - 0.431925
yscW YscC lipoprotein chaperoneSubName: Full=Pre-lipoprotein VirG homolog; SubName: Full=Putative Yop targeting lipoprotein; SubName: Full=Putative Yop targeting lipoprotein VirG; SubName: Full=YscC lipoprotein chaperone; pCD1 CDS24846 396 - 0.444444