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2024-05-01 05:52:09

Gene list

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Organism: Salmonella typhimurium LT2, SGSC1412

Number of genes found: 103

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Salmonella typhimurium LT2, SGSC1412
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
PSLT001 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; pSLT CDS94 285 + 0.536842
PSLT002 putative phospholipase DSubName: Full=Putative phospholipase D; pSLT CDS712 444 + 0.547297
PSLT007 putative outer membrane proteinSubName: Full=Putative outer membrane protein; pSLT CDS3730 141 + 0.609929
PSLT020 hypothetical proteinSubName: Full=Uncharacterized protein; pSLT CDS15561 204 + 0.441176
PSLT024 hypothetical proteinSubName: Full=Uncharacterized protein; pSLT CDS17369 309 + 0.485437
PSLT025 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; pSLT CDS18119 297 - 0.481481
PSLT026 putative periplasmic proteinSubName: Full=Putative periplasmic protein; pSLT CDS18899 522 - 0.44636
PSLT029 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; pSLT CDS20623 291 + 0.62543
PSLT030 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; pSLT CDS20910 522 + 0.599617
PSLT032 putative diguanylate cyclase/phosphodiesteraseSubName: Full=Putative diguanylate cyclase/phosphodiesterase; pSLT CDS22257 552 + 0.657609
PSLT033 putative inner membrane proteinSubName: Full=Putative inner membrane protein; pSLT CDS23477 486 + 0.687243
PSLT034 putative adhesinSubName: Full=Putative adhesin; pSLT CDS24682 561 + 0.643494
PSLT036 putative transposase, IS200-likeSubName: Full=Putative transposase, IS200-like; pSLT CDS25877 264 + 0.507576
PSLT042 putative integrase proteinSubName: Full=Putative integrase protein; pSLT CDS32929 1038 + 0.520231
PSLT043 putative phosphoribulokinase / uridine kinase familySubName: Full=Putative phosphoribulokinase / uridine kinase family; pSLT CDS34155 1026 - 0.538012
PSLT046 putative carbonic anhydraseSubName: Full=Putative carbonic anhydrase; pSLT CDS37528 741 - 0.492578
PSLT047 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; pSLT CDS38923 489 - 0.531697
PSLT049 putative DNA polymerase III epsilon subunit (3'-5' exonuclease)RecName: Full=Uncharacterized protein pSLT049; pSLT CDS40871 417 + 0.604317
PSLT050 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; pSLT CDS40981 327 - 0.602446
PSLT056 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; pSLT CDS48285 471 + 0.541401
PSLT057 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; pSLT CDS48748 357 + 0.540616
PSLT059 putative adenine-specific DNA methylaseSubName: Full=Putative adenine-specific DNA methylase; pSLT CDS49486 681 + 0.590308
PSLT060 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; pSLT CDS50166 222 + 0.554054
PSLT061 putative inner membrane proteinSubName: Full=Putative inner membrane protein; pSLT CDS50928 765 + 0.613072
PSLT062 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; pSLT CDS52188 435 + 0.517241
PSLT063 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; pSLT CDS52689 435 + 0.535632
PSLT064 putative inner membrane proteinSubName: Full=Putative inner membrane protein; pSLT CDS53359 324 + 0.524691
PSLT067 putative cytoplasmic proteinRecName: Full=UPF0401 protein YubL; pSLT CDS54974 243 + 0.555556
PSLT068 putative ParB-like nuclease domainSubName: Full=Putative ParB-like nuclease domain; pSLT CDS55285 1998 + 0.586086
PSLT087 conjugative transfer:SubName: Full=Conjugative transfer protein; pSLT CDS67730 468 + 0.510684
PSLT093 conjugative transfer:SubName: Full=Conjugative transfer protein; pSLT CDS73239 309 + 0.436893
PSLT106 homologue of mvpA, Shigella flexneriRecName: Full=tRNA(fMet)-specific endonuclease VapC; EC=3.1.-.-; AltName: Full=RNase VapC; AltName: Full=Toxin VapC; pSLT CDS86575 399 - 0.536341
PSLT107 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; pSLT CDS86973 231 - 0.52381
ccdA toxin addiction system: antidoteSubName: Full=Toxin addiction system: antidote; pSLT CDS20096 219 + 0.538813
ccdB toxin addiction system: toxinSubName: Full=Toxin addiction system: toxin; pSLT CDS20316 306 + 0.578431
finO conjugative transfer: regulationSubName: Full=Conjugative transfer: regulation; pSLT CDS93355 564 + 0.586879
finP antisense RNA determining region pSLT misc_RNA61461 168 - 0.434524
finP putative transglycosylaseSubName: Full=Putative transglycosylase; pSLT CDS60129 471 - 0.492569
orf5 putative outer membrane proteinSubName: Full=Putative outer membrane protein; pSLT CDS9676 558 - 0.501792
orf6 putative outer membrane proteinSubName: Full=Putative outer membrane protein; pSLT CDS8548 876 - 0.460046
orf7 putative bacterial regulatory proteins, luxR familySubName: Full=Putative bacterial regulatory proteins, luxR family; pSLT CDS7569 351 - 0.589744
parA plasmid partition protein ASubName: Full=Plasmid partition protein A; pSLT CDS43817 1206 + 0.468491
parB plasmid partition protein BSubName: Full=Plasmid partition protein B; pSLT CDS45019 978 + 0.447853
pefA plasmid-encoded fimbriae; major fimbrial subunitSubName: Full=Plasmid-encoded fimbriae major fimbrial subunit; pSLT CDS13569 519 - 0.531792
pefB plasmid-encoded fimbriae;regulationSubName: Full=Plasmid-encoded fimbriaeregulation; pSLT CDS14362 303 - 0.435644
pefC plasmid-encoded fimbriae; usher proteinRecName: Full=Outer membrane usher protein PefC; Flags: Precursor; pSLT CDS10933 2409 - 0.589871
pefD plasmid-encoded fimbriae;chaperoneSubName: Full=Plasmid-encoded fimbriaechaperone; pSLT CDS10248 693 - 0.584416
pefI plasmid-encoded fimbriae; regulatorySubName: Full=Plasmid-encoded fimbriae regulatory; pSLT CDS7904 213 - 0.502347
psiA Plasmid SOS inhibitionSubName: Full=Plasmid SOS inhibition; pSLT CDS57753 738 + 0.609756
psiB Plasmid SOS inhibitionSubName: Full=Plasmid SOS inhibition; pSLT CDS57322 435 + 0.586207
rcK resistance to complement killingSubName: Full=Resistance to complement killing; pSLT CDS4992 558 - 0.582437
repA DNA replicationSubName: Full=DNA replication; pSLT CDS1908 882 + 0.570295
repA2 DNA replicationSubName: Full=DNA replication; pSLT CDS16636 990 - 0.521212
repA3 DNA replicationSubName: Full=DNA replication; pSLT CDS1723 123 + 0.471545
repC DNA replicationSubName: Full=DNA replication; pSLT CDS1334 267 + 0.400749
rlgA putative resolvaseSubName: Full=Putative resolvase; pSLT CDS36761 561 - 0.565062
rlgA putative integrase proteinSubName: Full=Putative integrase protein; pSLT CDS35113 1665 - 0.556156
rsdB resolvaseSubName: Full=Resolvase; pSLT CDS21466 783 + 0.606641
samA mutagenesis by UV and mutagens; related to umuDC operonRecName: Full=Protein SamA; EC=3.4.21.-; Contains: RecName: Full=Protein SamA; pSLT CDS47352 423 - 0.553191
samB mutagenesis by UV and mutagens; related to umuDC operonSubName: Full=Mutagenesis by UV and mutagens related to umuDC operon; pSLT CDS46078 1275 - 0.541176
samB putative cytoplasmic proteinRecName: Full=Uncharacterized protein pSLT051; pSLT CDS42461 942 - 0.538217
spvA Salmonella plasmid virulence: outer membrane proteinSubName: Full=Salmonella plasmid virulence: outer membrane protein; pSLT CDS30148 768 - 0.542969
spvB Salmonella plasmid virulence: hydrophilic proteinSubName: Full=Salmonella plasmid virulence: hydrophilic protein; pSLT CDS28191 1776 - 0.518581
spvC Salmonella plasmid virulence: hydrophilic proteinRecName: Full=MAPK phosphothreonine lyase; EC=4.2.3.-; AltName: Full=27.5 kDa virulence protein; AltName: Full=Secreted effector protein SpvC; pSLT CDS27178 726 - 0.454545
spvD Salmonella plasmid virulence: hydrophilic proteinRecName: Full=Virulence protein vsdE; pSLT CDS26267 651 - 0.328725
spvD putative transposaseSubName: Full=Putative transposase; pSLT CDS25309 351 - 0.467236
spvR Salmonella plasmid virulence: regulation of spv operon, lysR familyRecName: Full=Virulence genes transcriptional activator; pSLT CDS31427 894 - 0.408277
srgA sdiA-regulated gene; putative thiol-disulfide isomerase or thioredoxinRecName: Full=Thiol:disulfide interchange protein; pSLT CDS6671 654 - 0.562691
srgB sdiA-regulated gene; putative outer membrane proteinSubName: Full=SdiA-regulated gene putative outer membrane protein; pSLT CDS5639 900 - 0.6
srgC sdiA-regulated gene;putative bacterial regulatory helix-turn-helix proteins, araC familySubName: Full=SdiA-regulated geneputative bacterial regulatory helix-turn-helix proteins, araC family; pSLT CDS3967 759 - 0.463768
ssbB single-strand binding proteinRecName: Full=Single-stranded DNA-binding protein 2; Short=SSB 2; pSLT CDS54401 519 + 0.572254
tap replication of plasmidSubName: Full=Replication of plasmid; pSLT CDS1850 78 + 0.410256
tlpA alpha-helical coiled coil proteinSubName: Full=Alpha-helical coiled coil protein; pSLT CDS39670 1116 + 0.584229
traA conjugative transfer: fimbrial subunitSubName: Full=Conjugative transfer: fimbrial subunit; pSLT CDS62636 363 + 0.534435
traB conjugative transfer: assemblySubName: Full=Conjugative transfer: assembly; pSLT CDS64639 1422 + 0.579466
traC conjugative transfer: assemblySubName: Full=Conjugative transfer: assembly; pSLT CDS68593 2649 + 0.569649
traD conjugative transfer: DNA transportSubName: Full=Conjugative transfer: DNA transport; pSLT CDS84323 2244 + 0.543672
traE conjugative transfer: assemblySubName: Full=Conjugative transfer: assembly; pSLT CDS63346 567 + 0.488536
traF conjugative transfer: assemblySubName: Full=Conjugative transfer: assembly; pSLT CDS76687 750 + 0.532
traG conjugative transfer: assembly abd aggregate stabilitySubName: Full=Conjugative transfer: assembly abd aggregate stability; pSLT CDS79847 2823 + 0.520014
traH conjugative transfer: assemblySubName: Full=Conjugative transfer: assembly; pSLT CDS78468 1383 + 0.539407
traI conjugative transfer: oriT nicking-unwindingSubName: Full=Conjugative transfer: oriT nicking-unwinding; pSLT CDS87282 5259 + 0.614756
traJ conjugative transfer: regulationSubName: Full=Conjugative transfer: regulation; pSLT CDS61587 687 + 0.349345
traK conjugative transfer: assemblySubName: Full=Conjugative transfer: assembly; pSLT CDS63899 741 + 0.615385
traL conjugative transfer: assemblySubName: Full=Conjugative transfer: assembly; pSLT CDS63013 312 + 0.483974
traM conjugative transfer: mating signalSubName: Full=Conjugative transfer: mating signal; pSLT CDS61014 381 + 0.35958
traN conjugative transfer: aggregate stabilitySubName: Full=Conjugative transfer: aggregate stability; pSLT CDS74623 1827 + 0.544609
traP conjugative transferSubName: Full=Conjugative transfer; pSLT CDS66050 597 + 0.515913
traQ conjugative transfer: fimbrial synthesisSubName: Full=Conjugative transfer: fimbrial synthesis; pSLT CDS77650 294 + 0.513605
traR conjugative transferSubName: Full=Conjugative transfer; pSLT CDS67516 222 + 0.486486
traS conjugative transfer: surface exclusionSubName: Full=Conjugative transfer: surface exclusion; pSLT CDS82685 495 + 0.385859
traT conjugative transfer: surface exclusionSubName: Full=Conjugative transfer: surface exclusion; pSLT CDS83215 732 + 0.501366
traU conjugative transfer: assemblySubName: Full=Conjugative transfer: assembly; pSLT CDS72228 993 + 0.567976
traV conjugative transfer: assemblySubName: Full=Conjugative transfer: assembly; pSLT CDS66866 516 + 0.583333
traW conjugative transfer: assemblySubName: Full=Conjugative transfer: assembly; pSLT CDS71599 633 + 0.616114
traX conjugative transfer: fimbrial acetylationSubName: Full=Conjugative transfer: fimbrial acetylation; pSLT CDS92560 741 + 0.607287
traY conjugative transfer: oriT nickingSubName: Full=Conjugative transfer: oriT nicking; pSLT CDS62274 321 + 0.386293
trbB conjugative transferSubName: Full=Conjugative transfer; pSLT CDS77930 549 + 0.566485
trbC conjugative transfer: assemblySubName: Full=Conjugative transfer: assembly; pSLT CDS73532 639 + 0.577465
trbD conjugative transfer:SubName: Full=Conjugative transfer protein; pSLT CDS66624 246 + 0.382114
trbE conjugative transferSubName: Full=Conjugative transfer; pSLT CDS76460 216 + 0.481481
trbH conjugative transferSubName: Full=Conjugative transfer; pSLT CDS86566 720 + 0.513889
trbI conjugative transferSubName: Full=Conjugative transfer; pSLT CDS71216 387 + 0.602067