Gene list
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Organism: Salmonella typhimurium LT2, SGSC1412
Gene type: CDS
Number of genes found: 102
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Salmonella typhimurium LT2, SGSC1412 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
PSLT001 | putative cytoplasmic protein | pSLT | CDS | 94 | 285 | + | 0.536842 | |
PSLT002 | putative phospholipase D | pSLT | CDS | 712 | 444 | + | 0.547297 | |
PSLT007 | putative outer membrane protein | pSLT | CDS | 3730 | 141 | + | 0.609929 | |
PSLT020 | hypothetical protein | pSLT | CDS | 15561 | 204 | + | 0.441176 | |
PSLT024 | hypothetical protein | pSLT | CDS | 17369 | 309 | + | 0.485437 | |
PSLT025 | putative cytoplasmic protein | pSLT | CDS | 18119 | 297 | - | 0.481481 | |
PSLT026 | putative periplasmic protein | pSLT | CDS | 18899 | 522 | - | 0.44636 | |
PSLT029 | putative cytoplasmic protein | pSLT | CDS | 20623 | 291 | + | 0.62543 | |
PSLT030 | putative cytoplasmic protein | pSLT | CDS | 20910 | 522 | + | 0.599617 | |
PSLT032 | putative diguanylate cyclase/phosphodiesterase | pSLT | CDS | 22257 | 552 | + | 0.657609 | |
PSLT033 | putative inner membrane protein | pSLT | CDS | 23477 | 486 | + | 0.687243 | |
PSLT034 | putative adhesin | pSLT | CDS | 24682 | 561 | + | 0.643494 | |
PSLT036 | putative transposase, IS200-like | pSLT | CDS | 25877 | 264 | + | 0.507576 | |
PSLT042 | putative integrase protein | pSLT | CDS | 32929 | 1038 | + | 0.520231 | |
PSLT043 | putative phosphoribulokinase / uridine kinase family | pSLT | CDS | 34155 | 1026 | - | 0.538012 | |
PSLT046 | putative carbonic anhydrase | pSLT | CDS | 37528 | 741 | - | 0.492578 | |
PSLT047 | putative cytoplasmic protein | pSLT | CDS | 38923 | 489 | - | 0.531697 | |
PSLT049 | putative DNA polymerase III epsilon subunit (3'-5' exonuclease) | pSLT | CDS | 40871 | 417 | + | 0.604317 | |
PSLT050 | putative cytoplasmic protein | pSLT | CDS | 40981 | 327 | - | 0.602446 | |
PSLT056 | putative cytoplasmic protein | pSLT | CDS | 48285 | 471 | + | 0.541401 | |
PSLT057 | putative cytoplasmic protein | pSLT | CDS | 48748 | 357 | + | 0.540616 | |
PSLT059 | putative adenine-specific DNA methylase | pSLT | CDS | 49486 | 681 | + | 0.590308 | |
PSLT060 | putative cytoplasmic protein | pSLT | CDS | 50166 | 222 | + | 0.554054 | |
PSLT061 | putative inner membrane protein | pSLT | CDS | 50928 | 765 | + | 0.613072 | |
PSLT062 | putative cytoplasmic protein | pSLT | CDS | 52188 | 435 | + | 0.517241 | |
PSLT063 | putative cytoplasmic protein | pSLT | CDS | 52689 | 435 | + | 0.535632 | |
PSLT064 | putative inner membrane protein | pSLT | CDS | 53359 | 324 | + | 0.524691 | |
PSLT067 | putative cytoplasmic protein | pSLT | CDS | 54974 | 243 | + | 0.555556 | |
PSLT068 | putative ParB-like nuclease domain | pSLT | CDS | 55285 | 1998 | + | 0.586086 | |
PSLT087 | conjugative transfer: | pSLT | CDS | 67730 | 468 | + | 0.510684 | |
PSLT093 | conjugative transfer: | pSLT | CDS | 73239 | 309 | + | 0.436893 | |
PSLT106 | homologue of mvpA, Shigella flexneri | pSLT | CDS | 86575 | 399 | - | 0.536341 | |
PSLT107 | putative cytoplasmic protein | pSLT | CDS | 86973 | 231 | - | 0.52381 | |
ccdA | toxin addiction system: antidote | pSLT | CDS | 20096 | 219 | + | 0.538813 | |
ccdB | toxin addiction system: toxin | pSLT | CDS | 20316 | 306 | + | 0.578431 | |
finO | conjugative transfer: regulation | pSLT | CDS | 93355 | 564 | + | 0.586879 | |
finP | putative transglycosylase | pSLT | CDS | 60129 | 471 | - | 0.492569 | |
orf5 | putative outer membrane protein | pSLT | CDS | 9676 | 558 | - | 0.501792 | |
orf6 | putative outer membrane protein | pSLT | CDS | 8548 | 876 | - | 0.460046 | |
orf7 | putative bacterial regulatory proteins, luxR family | pSLT | CDS | 7569 | 351 | - | 0.589744 | |
parA | plasmid partition protein A | pSLT | CDS | 43817 | 1206 | + | 0.468491 | |
parB | plasmid partition protein B | pSLT | CDS | 45019 | 978 | + | 0.447853 | |
pefA | plasmid-encoded fimbriae; major fimbrial subunit | pSLT | CDS | 13569 | 519 | - | 0.531792 | |
pefB | plasmid-encoded fimbriae;regulation | pSLT | CDS | 14362 | 303 | - | 0.435644 | |
pefC | plasmid-encoded fimbriae; usher protein | pSLT | CDS | 10933 | 2409 | - | 0.589871 | |
pefD | plasmid-encoded fimbriae;chaperone | pSLT | CDS | 10248 | 693 | - | 0.584416 | |
pefI | plasmid-encoded fimbriae; regulatory | pSLT | CDS | 7904 | 213 | - | 0.502347 | |
psiA | Plasmid SOS inhibition | pSLT | CDS | 57753 | 738 | + | 0.609756 | |
psiB | Plasmid SOS inhibition | pSLT | CDS | 57322 | 435 | + | 0.586207 | |
rcK | resistance to complement killing | pSLT | CDS | 4992 | 558 | - | 0.582437 | |
repA | DNA replication | pSLT | CDS | 1908 | 882 | + | 0.570295 | |
repA2 | DNA replication | pSLT | CDS | 16636 | 990 | - | 0.521212 | |
repA3 | DNA replication | pSLT | CDS | 1723 | 123 | + | 0.471545 | |
repC | DNA replication | pSLT | CDS | 1334 | 267 | + | 0.400749 | |
rlgA | putative resolvase | pSLT | CDS | 36761 | 561 | - | 0.565062 | |
rlgA | putative integrase protein | pSLT | CDS | 35113 | 1665 | - | 0.556156 | |
rsdB | resolvase | pSLT | CDS | 21466 | 783 | + | 0.606641 | |
samA | mutagenesis by UV and mutagens; related to umuDC operon | pSLT | CDS | 47352 | 423 | - | 0.553191 | |
samB | mutagenesis by UV and mutagens; related to umuDC operon | pSLT | CDS | 46078 | 1275 | - | 0.541176 | |
samB | putative cytoplasmic protein | pSLT | CDS | 42461 | 942 | - | 0.538217 | |
spvA | Salmonella plasmid virulence: outer membrane protein | pSLT | CDS | 30148 | 768 | - | 0.542969 | |
spvB | Salmonella plasmid virulence: hydrophilic protein | pSLT | CDS | 28191 | 1776 | - | 0.518581 | |
spvC | Salmonella plasmid virulence: hydrophilic protein | pSLT | CDS | 27178 | 726 | - | 0.454545 | |
spvD | Salmonella plasmid virulence: hydrophilic protein | pSLT | CDS | 26267 | 651 | - | 0.328725 | |
spvD | putative transposase | pSLT | CDS | 25309 | 351 | - | 0.467236 | |
spvR | Salmonella plasmid virulence: regulation of spv operon, lysR family | pSLT | CDS | 31427 | 894 | - | 0.408277 | |
srgA | sdiA-regulated gene; putative thiol-disulfide isomerase or thioredoxin | pSLT | CDS | 6671 | 654 | - | 0.562691 | |
srgB | sdiA-regulated gene; putative outer membrane protein | pSLT | CDS | 5639 | 900 | - | 0.6 | |
srgC | sdiA-regulated gene;putative bacterial regulatory helix-turn-helix proteins, araC family | pSLT | CDS | 3967 | 759 | - | 0.463768 | |
ssbB | single-strand binding protein | pSLT | CDS | 54401 | 519 | + | 0.572254 | |
tap | replication of plasmid | pSLT | CDS | 1850 | 78 | + | 0.410256 | |
tlpA | alpha-helical coiled coil protein | pSLT | CDS | 39670 | 1116 | + | 0.584229 | |
traA | conjugative transfer: fimbrial subunit | pSLT | CDS | 62636 | 363 | + | 0.534435 | |
traB | conjugative transfer: assembly | pSLT | CDS | 64639 | 1422 | + | 0.579466 | |
traC | conjugative transfer: assembly | pSLT | CDS | 68593 | 2649 | + | 0.569649 | |
traD | conjugative transfer: DNA transport | pSLT | CDS | 84323 | 2244 | + | 0.543672 | |
traE | conjugative transfer: assembly | pSLT | CDS | 63346 | 567 | + | 0.488536 | |
traF | conjugative transfer: assembly | pSLT | CDS | 76687 | 750 | + | 0.532 | |
traG | conjugative transfer: assembly abd aggregate stability | pSLT | CDS | 79847 | 2823 | + | 0.520014 | |
traH | conjugative transfer: assembly | pSLT | CDS | 78468 | 1383 | + | 0.539407 | |
traI | conjugative transfer: oriT nicking-unwinding | pSLT | CDS | 87282 | 5259 | + | 0.614756 | |
traJ | conjugative transfer: regulation | pSLT | CDS | 61587 | 687 | + | 0.349345 | |
traK | conjugative transfer: assembly | pSLT | CDS | 63899 | 741 | + | 0.615385 | |
traL | conjugative transfer: assembly | pSLT | CDS | 63013 | 312 | + | 0.483974 | |
traM | conjugative transfer: mating signal | pSLT | CDS | 61014 | 381 | + | 0.35958 | |
traN | conjugative transfer: aggregate stability | pSLT | CDS | 74623 | 1827 | + | 0.544609 | |
traP | conjugative transfer | pSLT | CDS | 66050 | 597 | + | 0.515913 | |
traQ | conjugative transfer: fimbrial synthesis | pSLT | CDS | 77650 | 294 | + | 0.513605 | |
traR | conjugative transfer | pSLT | CDS | 67516 | 222 | + | 0.486486 | |
traS | conjugative transfer: surface exclusion | pSLT | CDS | 82685 | 495 | + | 0.385859 | |
traT | conjugative transfer: surface exclusion | pSLT | CDS | 83215 | 732 | + | 0.501366 | |
traU | conjugative transfer: assembly | pSLT | CDS | 72228 | 993 | + | 0.567976 | |
traV | conjugative transfer: assembly | pSLT | CDS | 66866 | 516 | + | 0.583333 | |
traW | conjugative transfer: assembly | pSLT | CDS | 71599 | 633 | + | 0.616114 | |
traX | conjugative transfer: fimbrial acetylation | pSLT | CDS | 92560 | 741 | + | 0.607287 | |
traY | conjugative transfer: oriT nicking | pSLT | CDS | 62274 | 321 | + | 0.386293 | |
trbB | conjugative transfer | pSLT | CDS | 77930 | 549 | + | 0.566485 | |
trbC | conjugative transfer: assembly | pSLT | CDS | 73532 | 639 | + | 0.577465 | |
trbD | conjugative transfer: | pSLT | CDS | 66624 | 246 | + | 0.382114 | |
trbE | conjugative transfer | pSLT | CDS | 76460 | 216 | + | 0.481481 | |
trbH | conjugative transfer | pSLT | CDS | 86566 | 720 | + | 0.513889 | |
trbI | conjugative transfer | pSLT | CDS | 71216 | 387 | + | 0.602067 |