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2024-04-18 08:53:45

Gene list

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Organism: Salmonella typhimurium LT2, SGSC1412

Number of genes found: 103

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Salmonella typhimurium LT2, SGSC1412
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
PSLT001 putative cytoplasmic proteinpSLT CDS94 285 + 0.536842
PSLT002 putative phospholipase DpSLT CDS712 444 + 0.547297
PSLT007 putative outer membrane proteinpSLT CDS3730 141 + 0.609929
PSLT020 hypothetical proteinpSLT CDS15561 204 + 0.441176
PSLT024 hypothetical proteinpSLT CDS17369 309 + 0.485437
PSLT025 putative cytoplasmic proteinpSLT CDS18119 297 - 0.481481
PSLT026 putative periplasmic proteinpSLT CDS18899 522 - 0.44636
PSLT029 putative cytoplasmic proteinpSLT CDS20623 291 + 0.62543
PSLT030 putative cytoplasmic proteinpSLT CDS20910 522 + 0.599617
PSLT032 putative diguanylate cyclase/phosphodiesterasepSLT CDS22257 552 + 0.657609
PSLT033 putative inner membrane proteinpSLT CDS23477 486 + 0.687243
PSLT034 putative adhesinpSLT CDS24682 561 + 0.643494
PSLT036 putative transposase, IS200-likepSLT CDS25877 264 + 0.507576
PSLT042 putative integrase proteinpSLT CDS32929 1038 + 0.520231
PSLT043 putative phosphoribulokinase / uridine kinase familypSLT CDS34155 1026 - 0.538012
PSLT046 putative carbonic anhydrasepSLT CDS37528 741 - 0.492578
PSLT047 putative cytoplasmic proteinpSLT CDS38923 489 - 0.531697
PSLT049 putative DNA polymerase III epsilon subunit (3'-5' exonuclease)pSLT CDS40871 417 + 0.604317
PSLT050 putative cytoplasmic proteinpSLT CDS40981 327 - 0.602446
PSLT056 putative cytoplasmic proteinpSLT CDS48285 471 + 0.541401
PSLT057 putative cytoplasmic proteinpSLT CDS48748 357 + 0.540616
PSLT059 putative adenine-specific DNA methylasepSLT CDS49486 681 + 0.590308
PSLT060 putative cytoplasmic proteinpSLT CDS50166 222 + 0.554054
PSLT061 putative inner membrane proteinpSLT CDS50928 765 + 0.613072
PSLT062 putative cytoplasmic proteinpSLT CDS52188 435 + 0.517241
PSLT063 putative cytoplasmic proteinpSLT CDS52689 435 + 0.535632
PSLT064 putative inner membrane proteinpSLT CDS53359 324 + 0.524691
PSLT067 putative cytoplasmic proteinpSLT CDS54974 243 + 0.555556
PSLT068 putative ParB-like nuclease domainpSLT CDS55285 1998 + 0.586086
PSLT087 conjugative transfer:pSLT CDS67730 468 + 0.510684
PSLT093 conjugative transfer:pSLT CDS73239 309 + 0.436893
PSLT106 homologue of mvpA, Shigella flexneripSLT CDS86575 399 - 0.536341
PSLT107 putative cytoplasmic proteinpSLT CDS86973 231 - 0.52381
ccdA toxin addiction system: antidotepSLT CDS20096 219 + 0.538813
ccdB toxin addiction system: toxinpSLT CDS20316 306 + 0.578431
finO conjugative transfer: regulationpSLT CDS93355 564 + 0.586879
finP antisense RNA determining regionpSLT misc_RNA61461 168 - 0.434524
finP putative transglycosylasepSLT CDS60129 471 - 0.492569
orf5 putative outer membrane proteinpSLT CDS9676 558 - 0.501792
orf6 putative outer membrane proteinpSLT CDS8548 876 - 0.460046
orf7 putative bacterial regulatory proteins, luxR familypSLT CDS7569 351 - 0.589744
parA plasmid partition protein ApSLT CDS43817 1206 + 0.468491
parB plasmid partition protein BpSLT CDS45019 978 + 0.447853
pefA plasmid-encoded fimbriae; major fimbrial subunitpSLT CDS13569 519 - 0.531792
pefB plasmid-encoded fimbriae;regulationpSLT CDS14362 303 - 0.435644
pefC plasmid-encoded fimbriae; usher proteinpSLT CDS10933 2409 - 0.589871
pefD plasmid-encoded fimbriae;chaperonepSLT CDS10248 693 - 0.584416
pefI plasmid-encoded fimbriae; regulatorypSLT CDS7904 213 - 0.502347
psiA Plasmid SOS inhibitionpSLT CDS57753 738 + 0.609756
psiB Plasmid SOS inhibitionpSLT CDS57322 435 + 0.586207
rcK resistance to complement killingpSLT CDS4992 558 - 0.582437
repA DNA replicationpSLT CDS1908 882 + 0.570295
repA2 DNA replicationpSLT CDS16636 990 - 0.521212
repA3 DNA replicationpSLT CDS1723 123 + 0.471545
repC DNA replicationpSLT CDS1334 267 + 0.400749
rlgA putative integrase proteinpSLT CDS35113 1665 - 0.556156
rlgA putative resolvasepSLT CDS36761 561 - 0.565062
rsdB resolvasepSLT CDS21466 783 + 0.606641
samA mutagenesis by UV and mutagens; related to umuDC operonpSLT CDS47352 423 - 0.553191
samB mutagenesis by UV and mutagens; related to umuDC operonpSLT CDS46078 1275 - 0.541176
samB putative cytoplasmic proteinpSLT CDS42461 942 - 0.538217
spvA Salmonella plasmid virulence: outer membrane proteinpSLT CDS30148 768 - 0.542969
spvB Salmonella plasmid virulence: hydrophilic proteinpSLT CDS28191 1776 - 0.518581
spvC Salmonella plasmid virulence: hydrophilic proteinpSLT CDS27178 726 - 0.454545
spvD putative transposasepSLT CDS25309 351 - 0.467236
spvD Salmonella plasmid virulence: hydrophilic proteinpSLT CDS26267 651 - 0.328725
spvR Salmonella plasmid virulence: regulation of spv operon, lysR familypSLT CDS31427 894 - 0.408277
srgA sdiA-regulated gene; putative thiol-disulfide isomerase or thioredoxinpSLT CDS6671 654 - 0.562691
srgB sdiA-regulated gene; putative outer membrane proteinpSLT CDS5639 900 - 0.6
srgC sdiA-regulated gene;putative bacterial regulatory helix-turn-helix proteins, araC familypSLT CDS3967 759 - 0.463768
ssbB single-strand binding proteinpSLT CDS54401 519 + 0.572254
tap replication of plasmidpSLT CDS1850 78 + 0.410256
tlpA alpha-helical coiled coil proteinpSLT CDS39670 1116 + 0.584229
traA conjugative transfer: fimbrial subunitpSLT CDS62636 363 + 0.534435
traB conjugative transfer: assemblypSLT CDS64639 1422 + 0.579466
traC conjugative transfer: assemblypSLT CDS68593 2649 + 0.569649
traD conjugative transfer: DNA transportpSLT CDS84323 2244 + 0.543672
traE conjugative transfer: assemblypSLT CDS63346 567 + 0.488536
traF conjugative transfer: assemblypSLT CDS76687 750 + 0.532
traG conjugative transfer: assembly abd aggregate stabilitypSLT CDS79847 2823 + 0.520014
traH conjugative transfer: assemblypSLT CDS78468 1383 + 0.539407
traI conjugative transfer: oriT nicking-unwindingpSLT CDS87282 5259 + 0.614756
traJ conjugative transfer: regulationpSLT CDS61587 687 + 0.349345
traK conjugative transfer: assemblypSLT CDS63899 741 + 0.615385
traL conjugative transfer: assemblypSLT CDS63013 312 + 0.483974
traM conjugative transfer: mating signalpSLT CDS61014 381 + 0.35958
traN conjugative transfer: aggregate stabilitypSLT CDS74623 1827 + 0.544609
traP conjugative transferpSLT CDS66050 597 + 0.515913
traQ conjugative transfer: fimbrial synthesispSLT CDS77650 294 + 0.513605
traR conjugative transferpSLT CDS67516 222 + 0.486486
traS conjugative transfer: surface exclusionpSLT CDS82685 495 + 0.385859
traT conjugative transfer: surface exclusionpSLT CDS83215 732 + 0.501366
traU conjugative transfer: assemblypSLT CDS72228 993 + 0.567976
traV conjugative transfer: assemblypSLT CDS66866 516 + 0.583333
traW conjugative transfer: assemblypSLT CDS71599 633 + 0.616114
traX conjugative transfer: fimbrial acetylationpSLT CDS92560 741 + 0.607287
traY conjugative transfer: oriT nickingpSLT CDS62274 321 + 0.386293
trbB conjugative transferpSLT CDS77930 549 + 0.566485
trbC conjugative transfer: assemblypSLT CDS73532 639 + 0.577465
trbD conjugative transfer:pSLT CDS66624 246 + 0.382114
trbE conjugative transferpSLT CDS76460 216 + 0.481481
trbH conjugative transferpSLT CDS86566 720 + 0.513889
trbI conjugative transferpSLT CDS71216 387 + 0.602067